Wall clock time and date at job start Tue Mar 31 2020 05:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99849 * 2 1 4 4 H 1.48499 * 109.46749 * 269.99754 * 3 2 1 5 5 H 1.48497 * 109.47144 * 29.99686 * 3 2 1 6 6 H 1.48498 * 109.47016 * 150.00007 * 3 2 1 7 7 C 1.37879 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99731 * 174.42911 * 7 2 1 9 9 C 1.50691 * 119.99951 * 354.42849 * 7 2 1 10 10 C 1.52996 * 115.55300 * 94.83186 * 9 7 2 11 11 S 1.81394 * 109.47368 * 63.02921 * 10 9 7 12 12 O 1.42108 * 110.54157 * 300.36344 * 11 10 9 13 13 O 1.42102 * 110.54702 * 77.11352 * 11 10 9 14 14 N 1.65596 * 104.45331 * 188.74320 * 11 10 9 15 15 C 1.46378 * 119.64568 * 261.30796 * 14 11 10 16 16 C 1.53749 * 109.20791 * 114.90844 * 15 14 11 17 17 S 1.81740 * 108.75498 * 57.83227 * 16 15 14 18 18 C 1.81739 * 102.30378 * 305.34357 * 17 16 15 19 19 C 1.46380 * 119.64958 * 81.57510 * 14 11 10 20 20 H 1.08996 * 109.46893 * 125.08795 * 19 14 11 21 21 C 1.53001 * 109.46770 * 5.09162 * 19 14 11 22 22 O 1.42907 * 109.46731 * 296.70510 * 21 19 14 23 23 C 1.53009 * 117.50044 * 240.49956 * 9 7 2 24 24 C 1.53002 * 117.50041 * 309.15564 * 9 7 2 25 25 H 0.97004 * 120.00310 * 5.00243 * 1 2 3 26 26 H 1.08998 * 109.47693 * 183.02966 * 10 9 7 27 27 H 1.09005 * 109.47261 * 303.02932 * 10 9 7 28 28 H 1.09003 * 109.47036 * 234.91423 * 15 14 11 29 29 H 1.08996 * 109.46661 * 354.90195 * 15 14 11 30 30 H 1.08995 * 109.69964 * 297.99459 * 16 15 14 31 31 H 1.09005 * 109.51137 * 177.55598 * 16 15 14 32 32 H 1.08993 * 109.58332 * 294.74280 * 18 17 16 33 33 H 1.09002 * 109.69301 * 174.40487 * 18 17 16 34 34 H 1.09001 * 109.46999 * 56.70032 * 21 19 14 35 35 H 1.08996 * 109.47311 * 176.70919 * 21 19 14 36 36 H 0.96696 * 113.99271 * 180.02562 * 22 21 19 37 37 H 1.08992 * 117.49722 * 215.00773 * 23 9 7 38 38 H 1.09003 * 117.49273 * 0.02562 * 23 9 7 39 39 H 1.09001 * 117.49669 * 359.97438 * 24 9 7 40 40 H 1.09007 * 117.49926 * 144.97455 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0806 -1.1963 -0.0903 9 6 1.2564 -2.4959 0.1278 10 6 0.9135 -3.1918 -1.1909 11 16 2.4447 -3.6476 -2.0500 12 8 3.2278 -2.4928 -2.3200 13 8 3.0232 -4.8032 -1.4590 14 7 1.9442 -4.1596 -3.5432 15 6 1.8038 -5.5924 -3.8078 16 6 0.3234 -5.9162 -4.0673 17 16 -0.2574 -4.9133 -5.4673 18 6 0.1613 -3.2266 -4.9354 19 6 1.6524 -3.1748 -4.5862 20 1 2.2417 -3.4013 -5.4747 21 6 2.0094 -1.7756 -4.0805 22 8 1.1827 -1.4482 -2.9617 23 6 1.5823 -3.3834 1.3308 24 6 0.2537 -2.6253 1.2763 25 1 -0.4851 0.8369 -0.0733 26 1 0.3302 -4.0897 -0.9872 27 1 0.3325 -2.5156 -1.8182 28 1 2.3957 -5.8599 -4.6832 29 1 2.1560 -6.1574 -2.9448 30 1 -0.2651 -5.6811 -3.1805 31 1 0.2188 -6.9743 -4.3077 32 1 -0.4289 -2.9633 -4.0578 33 1 -0.0498 -2.5242 -5.7417 34 1 3.0561 -1.7550 -3.7772 35 1 1.8474 -1.0492 -4.8768 36 1 1.3542 -0.5726 -2.5890 37 1 1.5526 -4.4628 1.1826 38 1 2.3377 -3.0253 2.0304 39 1 0.1356 -1.7688 1.9400 40 1 -0.6504 -3.2057 1.0921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408461019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:18 Heat of formation + Delta-G solvation = -58.018291 kcal Electronic energy + Delta-G solvation = -25842.510822 eV Core-core repulsion = 22299.149821 eV Total energy + Delta-G solvation = -3543.361000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.40288 -36.83626 -36.60755 -35.14390 -34.89900 -32.06921 -31.90065 -29.21578 -28.10332 -26.07452 -25.42565 -23.01460 -21.51081 -21.14121 -19.38927 -18.40697 -17.32543 -17.15596 -16.40259 -16.29300 -15.46295 -15.11035 -14.76341 -14.50091 -14.32952 -14.30596 -14.00787 -13.69164 -13.53962 -13.12140 -13.05274 -12.40009 -12.12936 -11.81351 -11.66337 -11.44966 -11.28232 -11.10082 -10.98873 -10.88573 -10.82715 -10.61677 -10.41958 -10.33345 -10.04514 -9.85027 -9.57996 -9.05299 -8.92691 -8.78093 -8.50090 -7.99435 -7.63870 -6.09784 -4.18123 1.13281 1.79242 2.52111 3.21943 3.23397 3.32134 3.38484 4.32280 4.49397 4.63699 4.67199 4.80078 4.91507 5.07255 5.08157 5.13196 5.25761 5.30239 5.41084 5.49974 5.66790 5.71798 5.78807 5.84852 6.09940 6.11288 6.17172 6.35518 6.51809 6.67903 6.72675 6.82048 6.86244 7.12647 7.47463 7.52105 7.82338 8.26033 8.34085 8.86956 9.46758 10.96081 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.006316 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.041420 B = 4432.055718 C = 4921.251156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.077 3.923 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.492 4.492 8 H 0.070 0.930 9 C 0.047 3.953 10 C -0.546 4.546 11 S 2.612 3.388 12 O -0.939 6.939 13 O -0.993 6.993 14 N -1.006 6.006 15 C 0.114 3.886 16 C -0.100 4.100 17 S -0.274 6.274 18 C -0.090 4.090 19 C 0.166 3.834 20 H 0.094 0.906 21 C 0.011 3.989 22 O -0.559 6.559 23 C -0.226 4.226 24 C -0.129 4.129 25 H 0.260 0.740 26 H 0.080 0.920 27 H 0.168 0.832 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.132 0.868 35 H 0.046 0.954 36 H 0.400 0.600 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 -6.800 -9.566 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.127 4.127 3 Si 0.711 3.289 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.530 4.530 8 H 0.088 0.912 9 C 0.044 3.956 10 C -0.679 4.679 11 S 2.714 3.286 12 O -0.929 6.929 13 O -0.983 6.983 14 N -0.841 5.841 15 C -0.013 4.013 16 C -0.251 4.251 17 S -0.046 6.046 18 C -0.240 4.240 19 C 0.057 3.943 20 H 0.111 0.889 21 C -0.070 4.070 22 O -0.371 6.371 23 C -0.263 4.263 24 C -0.168 4.168 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.185 0.815 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.064 0.936 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.116 -7.618 -10.328 12.834 hybrid contribution 0.135 1.825 1.056 2.113 sum 0.019 -5.793 -9.271 10.932 Atomic orbital electron populations 1.70029 1.05656 1.26668 1.48298 1.24901 0.94661 0.98534 0.94603 0.86733 0.80221 0.83523 0.78419 1.20435 1.21418 1.19702 1.20503 0.93279 0.88153 1.51075 0.91167 1.18315 1.00113 0.94155 0.82989 1.30380 1.18356 1.07830 1.11369 1.05094 0.78191 0.73018 0.72334 1.93336 1.68556 1.50059 1.80987 1.93437 1.76736 1.51399 1.76771 1.57881 1.85135 1.11319 1.29744 1.21565 0.94197 0.81457 1.04107 1.23969 0.99732 1.02045 0.99305 1.86616 1.81912 1.05454 1.30655 1.23939 0.99857 0.94369 1.05809 1.21124 0.93947 0.87687 0.91518 0.88850 1.23524 1.01155 0.92515 0.89774 1.86293 1.62156 1.42342 1.46308 1.23335 1.01150 0.96287 1.05528 1.22436 0.90444 1.00377 1.03562 0.92971 0.90164 0.81511 0.90052 0.87395 0.89436 0.87017 0.87982 0.87262 0.85095 0.93637 0.74631 0.91247 0.89729 0.89156 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.93 12.27 55.43 0.68 -21.25 16 2 C 0.08 1.89 4.39 -17.82 -0.08 1.81 16 3 Si 0.88 19.60 29.54 -169.99 -5.02 14.57 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.49 -12.28 6.71 -34.44 -0.23 -12.51 16 8 H 0.07 1.84 7.51 -52.49 -0.39 1.44 16 9 C 0.05 1.08 1.54 -155.66 -0.24 0.84 16 10 C -0.55 -11.06 5.25 37.16 0.20 -10.87 16 11 S 2.61 50.39 4.68 -107.50 -0.50 49.88 16 12 O -0.94 -19.64 11.09 -66.84 -0.74 -20.38 16 13 O -0.99 -21.27 16.26 -57.54 -0.94 -22.20 16 14 N -1.01 -15.26 3.01 -106.92 -0.32 -15.59 16 15 C 0.11 1.48 6.28 -3.72 -0.02 1.45 16 16 C -0.10 -1.17 6.68 37.55 0.25 -0.92 16 17 S -0.27 -3.48 22.29 -107.50 -2.40 -5.87 16 18 C -0.09 -1.17 5.80 37.28 0.22 -0.95 16 19 C 0.17 2.26 3.14 -67.87 -0.21 2.04 16 20 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 21 C 0.01 0.17 5.75 37.16 0.21 0.38 16 22 O -0.56 -9.91 6.17 -58.58 -0.36 -10.27 16 23 C -0.23 -4.96 9.96 -26.69 -0.27 -5.23 16 24 C -0.13 -2.93 8.92 -26.69 -0.24 -3.17 16 25 H 0.26 6.36 8.32 -40.82 -0.34 6.02 16 26 H 0.08 1.49 8.11 -51.92 -0.42 1.07 16 27 H 0.17 3.45 5.11 -49.03 -0.25 3.20 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.11 1.45 6.54 -51.93 -0.34 1.11 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.49 7.54 -51.93 -0.39 1.10 16 33 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.13 2.21 5.15 -55.56 -0.29 1.92 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.40 7.63 7.69 48.66 0.37 8.00 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.09 2.19 7.88 -51.93 -0.41 1.79 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -28.25 328.21 -10.13 -38.38 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -5.06 Total: 14.92 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: -0.41 Total: -27.12 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.36 Total: -36.84 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -2.04 Total: -52.86 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 46.91 SS G_CDS: -2.90 Total: 44.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.25 -10.13 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408461019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.640 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds