Wall clock time and date at job start Tue Mar 31 2020 05:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86809 * 119.99761 * 2 1 4 4 H 1.48504 * 109.46955 * 269.99990 * 3 2 1 5 5 H 1.48495 * 109.46947 * 30.00426 * 3 2 1 6 6 H 1.48500 * 109.46813 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99924 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.62595 * 56.90091 * 9 7 2 11 11 C 1.55131 * 110.85646 * 293.68856 * 9 7 2 12 12 C 1.54908 * 101.65194 * 205.89219 * 11 9 7 13 13 N 1.47840 * 104.79607 * 37.07263 * 12 11 9 14 14 C 1.46907 * 111.00099 * 213.63563 * 13 12 11 15 15 C 1.50698 * 109.47047 * 290.84461 * 14 13 12 16 16 C 1.33389 * 122.54300 * 90.01943 * 15 14 13 17 17 S 1.75889 * 109.59326 * 179.97438 * 16 15 14 18 18 C 1.75879 * 90.97049 * 0.02562 * 17 16 15 19 19 C 1.50707 * 125.20222 * 180.02562 * 18 17 16 20 20 F 1.39893 * 109.47142 * 269.97322 * 19 18 17 21 21 F 1.39906 * 109.46789 * 29.97706 * 19 18 17 22 22 F 1.39899 * 109.46915 * 149.97293 * 19 18 17 23 23 C 1.33388 * 109.59837 * 359.97438 * 18 17 16 24 24 C 1.47442 * 108.56602 * 335.90256 * 13 12 11 25 25 H 0.97003 * 120.00588 * 359.97438 * 1 2 3 26 26 H 0.96702 * 114.00308 * 303.10398 * 10 9 7 27 27 H 1.08999 * 110.99384 * 323.98177 * 11 9 7 28 28 H 1.08999 * 110.99085 * 87.76505 * 11 9 7 29 29 H 1.09001 * 110.37676 * 278.23582 * 12 11 9 30 30 H 1.09009 * 110.37260 * 155.90080 * 12 11 9 31 31 H 1.08991 * 109.47281 * 170.84322 * 14 13 12 32 32 H 1.08996 * 109.47073 * 50.83946 * 14 13 12 33 33 H 1.07995 * 125.20209 * 0.24679 * 16 15 14 34 34 H 1.08000 * 122.54563 * 179.97438 * 23 18 17 35 35 H 1.08996 * 109.88987 * 120.39991 * 24 13 12 36 36 H 1.09003 * 109.88697 * 241.58034 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.3664 -2.5697 -1.1206 11 6 0.4710 -2.6865 1.3272 12 6 0.3704 -4.2298 1.4159 13 7 1.6603 -4.7231 0.8881 14 6 1.4854 -5.9958 0.1754 15 6 1.1396 -7.0808 1.1623 16 6 -0.1183 -7.3719 1.4972 17 16 -0.1285 -8.6857 2.6666 18 6 1.6281 -8.7676 2.6346 19 6 2.4679 -9.7273 3.4377 20 9 2.7870 -9.1487 4.6707 21 9 1.7509 -10.9100 3.6491 22 9 3.6452 -10.0144 2.7386 23 6 2.1035 -7.8510 1.7901 24 6 2.2284 -3.6933 -0.0012 25 1 -0.4851 0.8400 0.0004 26 1 -0.2685 -1.8417 -1.1668 27 1 1.0320 -2.2828 2.1701 28 1 -0.5183 -2.2331 1.2662 29 1 -0.4543 -4.5923 0.8022 30 1 0.2397 -4.5427 2.4518 31 1 2.4107 -6.2542 -0.3393 32 1 0.6802 -5.8968 -0.5526 33 1 -0.9965 -6.8795 1.1064 34 1 3.1602 -7.7193 1.6102 35 1 3.2017 -3.3762 0.3731 36 1 2.3286 -4.0901 -1.0115 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600168467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:26 Heat of formation + Delta-G solvation = -159.084810 kcal Electronic energy + Delta-G solvation = -24744.565664 eV Core-core repulsion = 20519.521399 eV Total energy + Delta-G solvation = -4225.044265 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.075 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.32893 -47.87274 -47.80178 -39.21135 -37.71705 -34.65697 -32.11406 -31.63676 -29.64796 -28.14349 -26.30123 -26.00988 -24.15312 -22.17837 -20.42486 -19.61283 -19.50622 -18.72732 -18.67555 -18.08660 -17.17396 -16.43664 -15.40737 -14.94342 -14.88286 -14.74926 -14.67850 -14.25958 -14.16079 -13.99114 -13.98022 -13.97421 -13.66486 -13.15848 -12.90761 -12.58982 -12.45963 -12.16592 -11.92272 -11.60328 -11.39020 -11.29372 -10.96682 -10.80648 -10.61724 -10.48170 -10.37058 -9.95964 -9.35411 -9.20290 -8.67702 -8.58056 -8.14735 -7.74156 -6.25419 -4.32380 0.49321 1.12966 1.61519 2.38304 2.48717 3.20633 3.27990 3.31529 3.52119 3.99907 4.18005 4.27649 4.67676 4.89400 4.95947 5.02272 5.26009 5.50719 5.61689 5.65037 5.75809 6.01706 6.06311 6.12270 6.22723 6.27956 6.37849 6.47161 6.88596 7.00778 7.35907 7.43100 7.58055 7.66882 7.78619 8.09337 8.69068 9.35512 9.46969 10.81905 Molecular weight = 321.08amu Principal moments of inertia in cm(-1) A = 0.027859 B = 0.002866 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.829944 B = 9767.102905 C =10120.350750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.237 3.763 10 O -0.593 6.593 11 C -0.131 4.131 12 C 0.043 3.957 13 N -0.525 5.525 14 C 0.106 3.894 15 C -0.092 4.092 16 C -0.175 4.175 17 S 0.164 5.836 18 C -0.320 4.320 19 C 0.546 3.454 20 F -0.172 7.172 21 F -0.177 7.177 22 F -0.171 7.171 23 C -0.031 4.031 24 C 0.058 3.942 25 H 0.267 0.733 26 H 0.384 0.616 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.174 0.826 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 -17.429 4.724 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.196 3.804 10 O -0.404 6.404 11 C -0.170 4.170 12 C -0.084 4.084 13 N -0.249 5.249 14 C -0.025 4.025 15 C -0.104 4.104 16 C -0.312 4.312 17 S 0.430 5.570 18 C -0.437 4.437 19 C 0.490 3.510 20 F -0.153 7.153 21 F -0.158 7.158 22 F -0.152 7.152 23 C -0.064 4.064 24 C -0.069 4.069 25 H 0.077 0.923 26 H 0.236 0.764 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.191 0.809 34 H 0.170 0.830 35 H 0.100 0.900 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.604 -18.789 5.828 19.682 hybrid contribution 0.731 2.258 -1.065 2.602 sum 0.127 -16.531 4.762 17.204 Atomic orbital electron populations 1.69578 1.05997 1.27509 1.50931 1.25005 0.94991 0.99517 0.93687 0.86451 0.79878 0.82610 0.78235 1.20508 1.21105 1.19715 1.21611 0.93632 0.90634 1.51160 0.91901 1.19702 0.86208 0.91766 0.82687 1.86060 1.51584 1.53355 1.49351 1.23168 1.01870 0.91240 1.00733 1.23077 0.89501 0.97591 0.98244 1.63706 1.24612 1.02172 1.34452 1.20956 1.01146 0.88243 0.92128 1.18888 0.91360 0.99035 1.01127 1.25905 1.01704 1.01384 1.02228 1.84191 0.98093 1.32802 1.41908 1.24467 0.99479 1.08423 1.11370 1.17200 0.77704 0.78629 0.77482 1.93245 1.93141 1.84256 1.44649 1.93206 1.77943 1.49516 1.95128 1.93210 1.49286 1.93822 1.78908 1.20012 1.02022 0.91636 0.92753 1.22861 0.98757 0.91258 0.94049 0.92267 0.76420 0.91791 0.90906 0.94575 0.92209 0.90068 0.93252 0.80887 0.83006 0.90035 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.52 10.69 55.43 0.59 -22.93 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -13.91 8.22 -34.44 -0.28 -14.19 16 8 H 0.06 1.63 7.53 -52.48 -0.40 1.24 16 9 C 0.24 5.66 0.85 -89.95 -0.08 5.58 16 10 O -0.59 -14.90 13.08 -35.23 -0.46 -15.36 16 11 C -0.13 -2.93 5.67 -24.60 -0.14 -3.07 16 12 C 0.04 0.81 5.67 -2.30 -0.01 0.79 16 13 N -0.53 -9.48 5.15 -232.69 -1.20 -10.68 16 14 C 0.11 1.57 4.84 -4.97 -0.02 1.55 16 15 C -0.09 -1.20 5.00 -106.25 -0.53 -1.73 16 16 C -0.18 -2.04 10.31 29.04 0.30 -1.74 16 17 S 0.16 1.75 23.05 -107.50 -2.48 -0.73 16 18 C -0.32 -3.78 5.95 -36.00 -0.21 -3.99 16 19 C 0.55 6.28 3.52 36.01 0.13 6.41 16 20 F -0.17 -2.10 17.30 2.25 0.04 -2.06 16 21 F -0.18 -1.99 17.06 2.25 0.04 -1.95 16 22 F -0.17 -1.96 16.93 2.25 0.04 -1.92 16 23 C -0.03 -0.37 9.50 -41.20 -0.39 -0.77 16 24 C 0.06 1.20 6.21 -2.84 -0.02 1.18 16 25 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.38 9.93 6.98 45.56 0.32 10.25 16 27 H 0.06 1.49 8.05 -51.93 -0.42 1.07 16 28 H 0.07 1.72 7.76 -51.93 -0.40 1.32 16 29 H 0.04 0.65 7.48 -51.93 -0.39 0.27 16 30 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.08 1.10 8.02 -51.93 -0.42 0.69 16 32 H 0.05 0.76 7.82 -51.93 -0.41 0.35 16 33 H 0.17 1.82 7.95 -52.49 -0.42 1.40 16 34 H 0.15 1.70 7.99 -52.49 -0.42 1.28 16 35 H 0.08 1.69 7.63 -51.93 -0.40 1.30 16 36 H 0.05 0.98 7.47 -51.93 -0.39 0.59 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -26.37 326.29 -8.18 -34.55 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -3.29 Total: 9.12 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.36 Total: -8.27 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: -0.61 Total: -33.61 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.46 Total: -15.36 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.12 Total: -5.93 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.48 Total: -0.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.37 -8.18 -34.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600168467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.538 kcal (2) G-P(sol) polarization free energy of solvation -26.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds