Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36880 * 126.39375 * 2 1 4 4 C 1.34676 * 106.81648 * 180.02562 * 3 2 1 5 5 N 1.34130 * 108.01882 * 359.77681 * 4 3 2 6 6 C 1.30501 * 109.25591 * 0.37234 * 5 4 3 7 7 C 1.50695 * 125.64920 * 179.89272 * 6 5 4 8 8 N 1.46509 * 109.47101 * 269.69145 * 7 6 5 9 9 S 1.65601 * 120.00093 * 165.00170 * 8 7 6 10 10 O 1.42100 * 106.40152 * 311.45907 * 9 8 7 11 11 O 1.42090 * 106.40111 * 178.54153 * 9 8 7 12 12 C 1.76195 * 107.21898 * 64.99763 * 9 8 7 13 13 C 1.38653 * 119.87696 * 269.73115 * 12 9 8 14 14 C 1.38619 * 120.50095 * 179.72345 * 13 12 9 15 15 C 1.37638 * 120.24921 * 0.55172 * 14 13 12 16 16 C 1.40704 * 119.74143 * 359.71910 * 15 14 13 17 17 C 1.41397 * 120.24215 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99466 * 204.38049 * 17 16 15 19 19 C 1.39940 * 119.99982 * 24.37250 * 17 16 15 20 20 N 1.30822 * 120.00180 * 17.88551 * 19 17 16 21 21 Si 1.86800 * 119.99922 * 197.87573 * 19 17 16 22 22 H 1.48500 * 109.47138 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46884 * 120.00308 * 21 19 17 24 24 H 1.48495 * 109.47234 * 240.00237 * 21 19 17 25 25 C 1.37595 * 119.87454 * 89.99995 * 12 9 8 26 26 H 1.08997 * 109.47438 * 269.97146 * 1 2 3 27 27 H 1.08999 * 109.47347 * 29.97832 * 1 2 3 28 28 H 1.09008 * 109.46707 * 149.97532 * 1 2 3 29 29 H 1.07994 * 126.59517 * 0.05464 * 3 2 1 30 30 H 1.07995 * 125.98946 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47461 * 149.69158 * 7 6 5 32 32 H 1.09004 * 109.47454 * 29.68805 * 7 6 5 33 33 H 0.96999 * 119.99394 * 345.00331 * 8 7 6 34 34 H 1.08000 * 119.75336 * 359.97438 * 13 12 9 35 35 H 1.08001 * 119.87697 * 180.24902 * 14 13 12 36 36 H 1.07999 * 120.13011 * 179.75021 * 15 14 13 37 37 H 0.96999 * 120.00049 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.12850 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2771 1.1018 0.0000 4 6 3.5460 0.6506 -0.0006 5 7 3.5096 -0.6902 0.0040 6 6 2.2663 -1.0870 -0.0005 7 6 1.8019 -2.5206 0.0001 8 7 1.6502 -2.9854 -1.3810 9 16 1.5154 -4.6048 -1.6996 10 8 2.5637 -5.2432 -0.9836 11 8 1.3494 -4.7247 -3.1057 12 6 0.0084 -5.1559 -0.9718 13 6 0.0028 -5.6266 0.3324 14 6 -1.1764 -6.0580 0.9196 15 6 -2.3545 -6.0339 0.2084 16 6 -2.3598 -5.5636 -1.1177 17 6 -3.5641 -5.5337 -1.8580 18 1 -3.5353 -5.5610 -2.9373 19 6 -4.7932 -5.4689 -1.1921 20 7 -4.8404 -5.0885 0.0587 21 14 -6.3668 -5.9253 -2.0895 22 1 -6.0446 -6.3192 -3.4845 23 1 -7.0216 -7.0619 -1.3933 24 1 -7.2848 -4.7582 -2.1036 25 6 -1.1576 -5.1227 -1.7017 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5143 29 1 1.9612 2.1345 0.0008 30 1 4.4368 1.2612 -0.0003 31 1 0.8437 -2.5919 0.5147 32 1 2.5370 -3.1405 0.5133 33 1 1.6287 -2.3444 -2.1088 34 1 0.9235 -5.6536 0.8964 35 1 -1.1699 -6.4189 1.9375 36 1 -3.2714 -6.3742 0.6665 37 1 -5.6924 -5.0432 0.5201 38 1 -1.1503 -4.7594 -2.7187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = 6.844464 kcal Electronic energy + Delta-G solvation = -24386.712162 eV Core-core repulsion = 20743.012622 eV Total energy + Delta-G solvation = -3643.699540 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18960 -37.71060 -36.71639 -35.35960 -35.25734 -34.08481 -33.91577 -30.14436 -29.94500 -29.85266 -27.21898 -25.69638 -25.51117 -21.96373 -21.49655 -21.06351 -20.15328 -19.16424 -18.05023 -17.50870 -16.80379 -16.14907 -15.99151 -15.48976 -15.22938 -14.95200 -14.70044 -14.42490 -13.74302 -13.55366 -13.40990 -13.22095 -13.10577 -12.93723 -12.66918 -12.63124 -11.97333 -11.65462 -11.61907 -11.54925 -11.44627 -11.43461 -11.04348 -10.95839 -10.65337 -10.06241 -9.87067 -9.75604 -9.71832 -9.42346 -9.28108 -8.57538 -8.11220 -7.77748 -7.00310 -4.60648 0.91283 1.88762 2.12799 2.55898 2.64997 2.95493 2.98029 3.00030 3.02711 3.63435 3.77295 4.14202 4.26929 4.39589 4.59966 4.67362 4.96064 5.01057 5.14440 5.29505 5.32853 5.36817 5.44034 5.67267 5.83695 6.00018 6.12668 6.15136 6.59430 6.63277 6.69497 6.77015 6.96007 7.00121 7.08291 7.15284 7.31593 7.66332 7.74557 7.87506 7.99909 8.33766 8.60054 8.64839 9.95012 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003897 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.680903 B = 7182.625676 C = 8143.032659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.450 5.450 3 C -0.054 4.054 4 C -0.031 4.031 5 N -0.474 5.474 6 C 0.197 3.803 7 C 0.209 3.791 8 N -1.118 6.118 9 S 2.691 3.309 10 O -0.969 6.969 11 O -0.969 6.969 12 C -0.633 4.633 13 C -0.150 4.150 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.091 3.909 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.124 4.124 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.415 0.585 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.283 0.717 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 10.669 2.295 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.133 5.133 3 C -0.188 4.188 4 C -0.180 4.180 5 N -0.193 5.193 6 C -0.066 4.066 7 C 0.081 3.919 8 N -0.876 5.876 9 S 2.787 3.213 10 O -0.959 6.959 11 O -0.959 6.959 12 C -0.725 4.725 13 C -0.171 4.171 14 C -0.139 4.139 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.734 3.266 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.146 4.146 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.192 0.808 30 H 0.188 0.812 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.248 0.752 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.717 9.574 2.171 11.361 hybrid contribution -2.303 0.971 -0.145 2.503 sum 3.414 10.546 2.026 11.268 Atomic orbital electron populations 1.22211 0.75969 1.05477 1.04278 1.45376 1.07942 1.06512 1.53464 1.22754 0.91407 0.92585 1.12093 1.22344 0.96456 0.91155 1.08087 1.70284 1.18412 1.12012 1.18616 1.23079 0.85878 0.90564 1.07085 1.19435 1.01974 0.86978 0.83534 1.55665 1.91428 1.27231 1.13249 1.01672 0.74712 0.71660 0.73283 1.93527 1.54535 1.73283 1.74552 1.93544 1.87500 1.84851 1.30024 1.29747 1.17556 1.18814 1.06350 1.20123 0.97637 1.06112 0.93251 1.20822 0.93309 1.01347 0.98451 1.21654 0.96920 0.99480 0.95734 1.17690 0.92071 0.89134 0.92320 1.19665 0.89807 1.44380 0.95056 0.89852 1.25924 1.01430 0.92002 0.94868 1.69777 1.28532 1.32485 1.11153 0.86219 0.80345 0.79093 0.80935 1.18178 1.19555 1.19871 1.20785 0.91954 1.03149 0.98688 0.89983 0.89380 0.88466 0.80795 0.81237 0.89686 0.87227 0.75210 0.87395 0.88322 0.85744 0.90620 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.79 59.85 0.65 1.18 16 2 N -0.45 -5.00 3.15 -121.28 -0.38 -5.38 16 3 C -0.05 -0.54 11.58 -16.56 -0.19 -0.74 16 4 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 5 N -0.47 -7.06 11.25 -10.82 -0.12 -7.19 16 6 C 0.20 2.68 7.30 -155.42 -1.13 1.54 16 7 C 0.21 2.84 6.31 -5.19 -0.03 2.81 16 8 N -1.12 -16.33 5.99 -11.65 -0.07 -16.40 16 9 S 2.69 49.27 5.73 -107.50 -0.62 48.65 16 10 O -0.97 -19.57 16.73 -57.18 -0.96 -20.53 16 11 O -0.97 -20.04 17.26 -57.18 -0.99 -21.02 16 12 C -0.63 -13.06 5.94 -39.66 -0.24 -13.30 16 13 C -0.15 -3.07 9.53 -39.29 -0.37 -3.44 16 14 C -0.12 -2.55 10.02 -39.66 -0.40 -2.94 16 15 C -0.12 -2.80 8.70 -38.87 -0.34 -3.14 16 16 C 0.09 2.25 5.58 -106.82 -0.60 1.65 16 17 C -0.46 -11.33 9.05 -37.74 -0.34 -11.67 16 18 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 19 C 0.08 1.75 5.14 -17.34 -0.09 1.66 16 20 N -0.79 -18.69 10.95 55.55 0.61 -18.08 16 21 Si 0.91 17.39 29.60 -169.99 -5.03 12.36 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.12 -2.84 9.26 -38.87 -0.36 -3.20 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.90 7.66 -51.92 -0.40 0.50 16 29 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.09 1.05 7.71 -51.93 -0.40 0.65 16 32 H 0.11 1.53 7.75 -51.93 -0.40 1.12 16 33 H 0.41 5.42 8.64 -34.48 -0.30 5.12 16 34 H 0.11 1.98 7.59 -52.49 -0.40 1.58 16 35 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.12 3.02 6.15 -52.49 -0.32 2.70 16 37 H 0.28 6.03 8.30 -40.82 -0.34 5.69 16 38 H 0.11 2.45 7.60 -52.49 -0.40 2.05 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -31.72 342.83 -10.33 -42.05 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.28 Total: 10.52 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -3.66 Total: -30.15 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.03 Total: -47.05 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.94 Total: -41.55 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 49.27 SS G_CDS: -0.62 Total: 48.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.72 -10.33 -42.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.898 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds