Wall clock time and date at job start Tue Mar 31 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34230 * 125.74199 * 2 1 4 4 C 1.38126 * 107.40713 * 180.15797 * 3 2 1 5 5 C 1.47286 * 126.42766 * 179.83501 * 4 3 2 6 6 O 1.21521 * 120.00041 * 179.68926 * 5 4 3 7 7 O 1.34754 * 119.99967 * 359.68620 * 5 4 3 8 8 C 1.45198 * 117.00242 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.47256 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00023 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99770 * 179.97438 * 9 8 7 12 12 C 1.37098 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99870 * 359.97438 * 12 11 9 14 14 C 1.38945 * 120.00210 * 180.02562 * 12 11 9 15 15 N 1.31418 * 119.99925 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00259 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47481 * 59.99814 * 16 14 12 18 18 H 1.48505 * 109.47244 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47116 * 299.99533 * 16 14 12 20 20 C 1.41342 * 107.14458 * 359.57530 * 4 3 2 21 21 C 1.50698 * 125.99425 * 180.24376 * 20 4 3 22 22 F 1.39904 * 109.47207 * 89.99464 * 21 20 4 23 23 F 1.39898 * 109.47609 * 209.99892 * 21 20 4 24 24 F 1.39904 * 109.47026 * 329.99843 * 21 20 4 25 25 N 1.30431 * 108.01576 * 0.26029 * 20 4 3 26 26 H 1.09003 * 109.47294 * 270.29268 * 1 2 3 27 27 H 1.08995 * 109.47428 * 30.29603 * 1 2 3 28 28 H 1.09004 * 109.46692 * 150.29246 * 1 2 3 29 29 H 1.07998 * 126.29531 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.47176 * 300.00214 * 8 7 5 31 31 H 1.08994 * 109.46872 * 60.00181 * 8 7 5 32 32 H 0.97000 * 119.99825 * 0.02562 * 11 9 8 33 33 H 0.96993 * 120.00310 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5602 0.6550 -0.0036 5 6 4.7632 1.5048 -0.0084 6 8 5.8667 0.9958 -0.0056 7 8 4.6402 2.8467 -0.0159 8 6 5.8683 3.6213 -0.0196 9 6 5.5352 5.0910 -0.0273 10 8 4.3767 5.4503 -0.0299 11 7 6.5246 6.0061 -0.0313 12 6 6.2216 7.3432 -0.0388 13 1 5.1901 7.6631 -0.0420 14 6 7.2416 8.2867 -0.0435 15 7 8.4968 7.8974 -0.0402 16 14 6.8288 10.1084 -0.0544 17 1 6.0356 10.4436 1.1554 18 1 8.0849 10.9006 -0.0574 19 1 6.0378 10.4294 -1.2695 20 6 3.5309 -0.7581 0.0042 21 6 4.7315 -1.6689 0.0088 22 9 5.1036 -1.9433 1.3292 23 9 4.4126 -2.8644 -0.6440 24 9 5.7932 -1.0443 -0.6545 25 7 2.2824 -1.1357 0.0063 26 1 -0.3634 0.0052 1.0277 27 1 -0.3634 0.8873 -0.5184 28 1 -0.3633 -0.8927 -0.5093 29 1 1.9160 2.1168 -0.0004 30 1 6.4493 3.3854 0.8719 31 1 6.4500 3.3756 -0.9080 32 1 7.4511 5.7187 -0.0296 33 1 9.2089 8.5560 -0.0430 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:06 Heat of formation + Delta-G solvation = -204.524785 kcal Electronic energy + Delta-G solvation = -26599.600350 eV Core-core repulsion = 21826.292446 eV Total energy + Delta-G solvation = -4773.307905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.077 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.23878 -48.79932 -48.68458 -42.90869 -41.27206 -39.91530 -37.42285 -35.98675 -35.02031 -33.38543 -32.34891 -29.97779 -29.49665 -27.04319 -26.35280 -24.24822 -22.53495 -21.73267 -21.37794 -20.04063 -19.66310 -19.52998 -19.25232 -18.68823 -17.81097 -17.73583 -17.48789 -16.83574 -16.79563 -16.32775 -15.76992 -15.67651 -15.61240 -15.52327 -15.15173 -14.94616 -14.86535 -14.85099 -14.52278 -14.02710 -13.77112 -13.69522 -13.64052 -13.52323 -13.33700 -12.90198 -12.53078 -12.45318 -12.11353 -11.82289 -11.69426 -11.53002 -11.09493 -10.46892 -10.25345 -10.08592 -8.49145 -5.99769 0.04612 0.18688 0.68983 1.28229 1.40322 1.46078 1.56720 1.67912 1.79553 1.91555 2.31694 2.41479 2.73946 3.09107 3.16827 3.19914 3.39840 3.64165 3.88437 3.99071 4.17879 4.21671 4.26378 4.32394 4.41006 4.55509 4.71355 5.26235 5.39873 5.49040 5.84009 5.92089 6.48455 6.64643 7.05682 7.43679 7.96131 8.67694 Molecular weight = 321.08amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.002818 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.286148 B = 9933.261452 C =11024.443307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.331 5.331 3 C 0.167 3.833 4 C -0.270 4.270 5 C 0.533 3.467 6 O -0.521 6.521 7 O -0.331 6.331 8 C 0.074 3.926 9 C 0.440 3.560 10 O -0.614 6.614 11 N -0.559 5.559 12 C -0.337 4.337 13 H 0.088 0.912 14 C -0.010 4.010 15 N -0.917 5.917 16 Si 0.998 3.002 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.269 1.269 20 C 0.029 3.971 21 C 0.551 3.449 22 F -0.170 7.170 23 F -0.168 7.168 24 F -0.149 7.149 25 N -0.251 5.251 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.239 0.761 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.399 0.601 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.122 -17.032 -0.035 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.109 5.109 3 C 0.015 3.985 4 C -0.283 4.283 5 C 0.378 3.622 6 O -0.410 6.410 7 O -0.246 6.246 8 C -0.004 4.004 9 C 0.227 3.773 10 O -0.500 6.500 11 N -0.196 5.196 12 C -0.466 4.466 13 H 0.105 0.895 14 C -0.210 4.210 15 N -0.557 5.557 16 Si 0.821 3.179 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.140 4.140 21 C 0.495 3.505 22 F -0.152 7.152 23 F -0.149 7.149 24 F -0.131 7.131 25 N -0.074 5.074 26 H 0.126 0.874 27 H 0.151 0.849 28 H 0.127 0.873 29 H 0.255 0.745 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.234 0.766 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.326 -17.847 -0.036 23.524 hybrid contribution 1.559 1.109 0.026 1.914 sum -13.766 -16.737 -0.009 21.671 Atomic orbital electron populations 1.22805 0.68499 1.07945 1.06733 1.48952 1.09325 1.01992 1.50616 1.23933 0.87999 0.95833 0.90736 1.19034 0.92825 0.90342 1.26125 1.20207 0.88474 0.80865 0.72638 1.90915 1.28144 1.74681 1.47291 1.86528 1.36149 1.17954 1.84011 1.22529 0.84642 0.87741 1.05461 1.20011 0.85899 0.87373 0.84011 1.90503 1.20791 1.82033 1.56708 1.41741 1.08231 1.05569 1.64094 1.19708 0.94732 0.81611 1.50579 0.89453 1.26128 0.94322 1.04847 0.95733 1.69674 0.99516 1.37248 1.49270 0.84917 0.77792 0.76044 0.79186 1.19396 1.19701 1.19382 1.22041 0.93472 0.92616 1.05834 1.16890 0.81495 0.77640 0.74477 1.93227 1.92203 1.93900 1.35824 1.93224 1.92774 1.47662 1.81247 1.93371 1.57499 1.81707 1.80476 1.77117 0.99285 1.09660 1.21361 0.87400 0.84867 0.87255 0.74461 0.87617 0.87595 0.76631 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 11.44 127.77 1.46 1.73 16 2 N -0.33 -4.97 3.98 -367.73 -1.46 -6.43 16 3 C 0.17 2.96 11.33 84.30 0.96 3.91 16 4 C -0.27 -7.11 6.09 -20.16 -0.12 -7.24 16 5 C 0.53 17.32 7.91 70.20 0.56 17.88 16 6 O -0.52 -18.91 13.05 19.77 0.26 -18.65 16 7 O -0.33 -11.66 9.58 -50.26 -0.48 -12.14 16 8 C 0.07 2.70 5.95 71.24 0.42 3.12 16 9 C 0.44 20.70 7.86 87.66 0.69 21.39 16 10 O -0.61 -32.91 16.08 15.73 0.25 -32.66 16 11 N -0.56 -28.02 5.29 -306.98 -1.62 -29.64 16 12 C -0.34 -18.49 9.68 84.04 0.81 -17.67 16 13 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 14 C -0.01 -0.50 5.50 84.92 0.47 -0.03 16 15 N -0.92 -48.37 13.05 21.66 0.28 -48.09 16 16 Si 1.00 41.22 29.55 68.60 2.03 43.24 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 C 0.03 0.75 6.61 43.53 0.29 1.04 16 21 C 0.55 15.32 3.37 71.24 0.24 15.56 16 22 F -0.17 -4.80 17.30 44.97 0.78 -4.02 16 23 F -0.17 -4.32 17.25 44.97 0.78 -3.54 16 24 F -0.15 -4.72 13.57 44.97 0.61 -4.11 16 25 N -0.25 -5.64 12.43 -46.65 -0.58 -6.22 16 26 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.24 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 33 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -73.82 320.31 7.09 -66.74 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.48 Total: 15.82 kcal Atomic # 6 Polarization: 33.92 SS G_CDS: 5.77 Total: 39.70 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -3.38 Total: -90.38 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: 0.03 Total: -63.45 kcal Atomic # 9 Polarization: -13.83 SS G_CDS: 2.16 Total: -11.67 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -73.82 7.09 -66.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.788 kcal (2) G-P(sol) polarization free energy of solvation -73.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds