Wall clock time and date at job start Tue Mar 31 2020 05:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86795 * 119.99654 * 2 1 4 4 H 1.48496 * 109.47390 * 270.00306 * 3 2 1 5 5 H 1.48505 * 109.47370 * 30.00393 * 3 2 1 6 6 H 1.48503 * 109.46957 * 150.00376 * 3 2 1 7 7 C 1.38943 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00419 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99707 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00240 * 179.97438 * 9 7 2 11 11 O 1.21301 * 119.99620 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00213 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.47003 * 180.02562 * 12 10 9 14 14 C 1.34743 * 116.99620 * 179.97438 * 13 12 10 15 15 O 1.21501 * 120.00522 * 359.97438 * 14 13 12 16 16 C 1.47494 * 119.99632 * 179.97438 * 14 13 12 17 17 C 1.39594 * 120.52116 * 0.02562 * 16 14 13 18 18 N 1.31684 * 120.94640 * 179.97438 * 17 16 14 19 19 C 1.32321 * 121.84281 * 0.02562 * 18 17 16 20 20 C 1.39866 * 120.56344 * 0.02562 * 19 18 17 21 21 C 1.38183 * 119.60058 * 359.91347 * 20 19 18 22 22 N 1.40128 * 119.52614 * 179.97438 * 20 19 18 23 23 C 1.35146 * 118.86843 * 15.55983 * 22 20 19 24 24 O 1.21289 * 120.19641 * 181.65152 * 23 22 20 25 25 C 1.50758 * 119.60457 * 1.67297 * 23 22 20 26 26 O 1.35752 * 120.37204 * 180.02562 * 19 18 17 27 27 H 0.96997 * 120.00228 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99726 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.47343 * 59.99535 * 12 10 9 30 30 H 1.08998 * 109.46623 * 299.99735 * 12 10 9 31 31 H 1.07993 * 119.52441 * 0.25480 * 17 16 14 32 32 H 1.07999 * 120.95659 * 180.02562 * 21 20 19 33 33 H 0.97000 * 120.56342 * 195.56904 * 22 20 19 34 34 H 1.08992 * 109.43314 * 208.42391 * 25 23 22 35 35 H 1.09004 * 109.38920 * 88.54658 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3704 -0.0011 13 8 6.0448 -3.7394 -0.0017 14 6 7.3806 -3.9158 -0.0023 15 8 8.1208 -2.9523 -0.0028 16 6 7.9444 -5.2788 -0.0024 17 6 7.1041 -6.3935 -0.0023 18 7 7.5984 -7.6141 -0.0029 19 6 8.9023 -7.8392 -0.0030 20 6 9.8081 -6.7735 -0.0020 21 6 9.3346 -5.4753 -0.0027 22 7 11.1844 -7.0368 -0.0016 23 6 11.6111 -8.2791 -0.3197 24 8 12.7950 -8.5417 -0.2978 25 6 10.6067 -9.3363 -0.7022 26 8 9.3794 -9.1102 -0.0041 27 1 -0.4850 0.8400 0.0004 28 1 3.8648 -0.3632 -0.0007 29 1 5.9241 -1.8565 0.8888 30 1 5.9240 -1.8566 -0.8911 31 1 6.0334 -6.2529 -0.0064 32 1 10.0143 -4.6360 -0.0023 33 1 11.8200 -6.3395 0.2233 34 1 10.9971 -10.3194 -0.4394 35 1 10.4269 -9.2929 -1.7765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771104262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:46 Heat of formation + Delta-G solvation = -157.427240 kcal Electronic energy + Delta-G solvation = -25274.867503 eV Core-core repulsion = 21045.458642 eV Total energy + Delta-G solvation = -4229.408862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.088 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.96093 -41.71591 -40.56556 -40.06341 -39.10582 -37.56896 -36.87494 -36.04725 -33.84004 -33.52835 -31.66688 -30.26881 -29.19419 -26.78345 -25.92215 -24.98954 -23.35979 -21.50905 -21.26265 -20.51741 -20.33828 -19.87398 -18.63367 -18.31209 -18.03885 -17.77136 -17.61199 -17.29645 -16.78559 -16.69148 -16.27089 -15.83220 -15.82696 -15.50120 -15.05029 -14.96196 -14.68466 -14.34008 -14.19810 -14.15197 -13.95629 -13.73619 -12.98295 -12.74939 -12.61885 -12.42947 -12.07133 -11.97002 -11.87545 -11.55466 -11.54981 -10.90047 -10.83683 -10.56959 -10.30978 -9.45563 -8.43115 -6.06104 -0.89926 -0.30456 0.85343 1.14729 1.29720 1.32692 1.36247 1.43290 1.46811 1.69330 1.80066 2.22793 2.36892 2.59371 2.76809 3.11512 3.12927 3.43424 3.45148 3.56229 3.82062 3.90088 3.91790 4.12401 4.19232 4.19731 4.26804 4.64316 4.91511 5.09422 5.15217 5.45851 5.50098 5.72435 5.88986 6.39328 6.47037 6.54990 6.58985 6.80932 7.29297 7.81410 8.73405 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.038838 B = 0.002208 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.770758 B =12677.104418 C =13354.117547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.961 3.039 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.229 1.229 7 C -0.331 4.331 8 H 0.061 0.939 9 N -0.577 5.577 10 C 0.449 3.551 11 O -0.606 6.606 12 C 0.070 3.930 13 O -0.336 6.336 14 C 0.524 3.476 15 O -0.516 6.516 16 C -0.174 4.174 17 C 0.186 3.814 18 N -0.490 5.490 19 C 0.323 3.677 20 C 0.046 3.954 21 C -0.002 4.002 22 N -0.647 5.647 23 C 0.495 3.505 24 O -0.534 6.534 25 C 0.053 3.947 26 O -0.294 6.294 27 H 0.281 0.719 28 H 0.393 0.607 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.188 0.812 32 H 0.183 0.817 33 H 0.429 0.571 34 H 0.183 0.817 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.940 -10.415 -1.511 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.210 4.210 3 Si 0.781 3.219 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.152 1.152 7 C -0.459 4.459 8 H 0.080 0.920 9 N -0.219 5.219 10 C 0.236 3.764 11 O -0.490 6.490 12 C -0.007 4.007 13 O -0.250 6.250 14 C 0.368 3.632 15 O -0.406 6.406 16 C -0.178 4.178 17 C 0.028 3.972 18 N -0.209 5.209 19 C 0.141 3.859 20 C -0.053 4.053 21 C -0.029 4.029 22 N -0.296 5.296 23 C 0.283 3.717 24 O -0.410 6.410 25 C -0.024 4.024 26 O -0.203 6.203 27 H 0.091 0.909 28 H 0.229 0.771 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.205 0.795 32 H 0.200 0.800 33 H 0.271 0.729 34 H 0.201 0.799 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 25.535 -11.957 -1.460 28.233 hybrid contribution 0.550 2.221 0.105 2.290 sum 26.085 -9.736 -1.355 27.875 Atomic orbital electron populations 1.69787 1.08119 1.29484 1.49284 1.26101 0.96460 1.02708 0.95725 0.85418 0.79645 0.76745 0.80108 1.17997 1.20009 1.15192 1.18993 0.80807 0.95271 1.50875 0.92049 1.41810 1.06052 1.07105 1.66962 1.20196 0.89388 0.84005 0.82833 1.90597 1.70952 1.32510 1.54971 1.22672 0.90485 0.80758 1.06813 1.86573 1.23446 1.31508 1.83519 1.20816 0.80324 0.89556 0.72468 1.90843 1.60498 1.42446 1.46845 1.19760 0.94195 0.91086 1.12798 1.23205 1.01610 0.84157 0.88199 1.67061 1.11831 1.25185 1.16785 1.19667 0.88498 0.84074 0.93704 1.18439 0.84545 0.93854 1.08418 1.21257 0.93888 0.95843 0.91906 1.43645 1.04763 1.14046 1.67130 1.21872 0.90355 0.83665 0.75839 1.90849 1.18385 1.80304 1.51415 1.23763 0.78171 1.00050 1.00452 1.86191 1.40133 1.23344 1.70659 0.90921 0.77065 0.86104 0.85983 0.79488 0.80014 0.72934 0.79945 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.98 13.96 21.66 0.30 -53.67 16 2 C -0.01 -0.54 5.50 84.92 0.47 -0.08 16 3 Si 0.96 36.76 27.74 68.60 1.90 38.66 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 7 C -0.33 -18.54 10.16 84.04 0.85 -17.69 16 8 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 9 N -0.58 -25.75 5.09 -306.98 -1.56 -27.32 16 10 C 0.45 19.32 7.86 87.66 0.69 20.01 16 11 O -0.61 -32.43 16.08 15.70 0.25 -32.17 16 12 C 0.07 2.06 5.95 71.24 0.42 2.49 16 13 O -0.34 -9.99 9.02 -50.14 -0.45 -10.44 16 14 C 0.52 12.72 7.90 70.26 0.55 13.28 16 15 O -0.52 -13.32 16.21 19.83 0.32 -13.00 16 16 C -0.17 -3.38 5.89 -19.98 -0.12 -3.50 16 17 C 0.19 3.87 10.77 85.04 0.92 4.79 16 18 N -0.49 -10.57 10.36 -306.96 -3.18 -13.75 16 19 C 0.32 5.70 7.54 85.01 0.64 6.34 16 20 C 0.05 0.64 6.54 38.20 0.25 0.89 16 21 C 0.00 -0.02 9.61 22.78 0.22 0.20 16 22 N -0.65 -7.11 5.48 -302.57 -1.66 -8.77 16 23 C 0.49 6.29 7.95 87.62 0.70 6.98 16 24 O -0.53 -10.19 17.95 -3.06 -0.05 -10.24 16 25 C 0.05 0.42 7.15 71.25 0.51 0.93 16 26 O -0.29 -4.45 10.50 -90.78 -0.95 -5.41 16 27 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.39 14.21 5.76 -92.71 -0.53 13.67 16 29 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.19 4.06 7.60 -2.91 -0.02 4.04 16 32 H 0.18 1.82 7.74 -2.91 -0.02 1.79 16 33 H 0.43 3.20 8.89 -92.71 -0.82 2.37 16 34 H 0.18 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -80.41 324.20 0.81 -79.60 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.21 Total: 21.88 kcal Atomic # 6 Polarization: 28.53 SS G_CDS: 6.10 Total: 34.63 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -6.10 Total: -103.50 kcal Atomic # 8 Polarization: -70.38 SS G_CDS: -0.89 Total: -71.27 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 1.90 Total: 38.66 kcal Total: -80.41 0.81 -79.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771104262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.829 kcal (2) G-P(sol) polarization free energy of solvation -80.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds