Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48493 * 109.47626 * 240.00016 * 3 2 1 5 5 H 1.48503 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47043 * 119.99889 * 3 2 1 7 7 C 1.37871 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47054 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47010 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54285 * 68.37876 * 11 10 9 13 13 O 1.42093 * 110.54437 * 291.62433 * 11 10 9 14 14 N 1.65607 * 104.44908 * 179.97438 * 11 10 9 15 15 C 1.34774 * 119.99900 * 65.00119 * 14 11 10 16 16 O 1.21285 * 119.99758 * 359.97438 * 15 14 11 17 17 C 1.50701 * 120.00070 * 179.97438 * 15 14 11 18 18 O 1.42898 * 109.47299 * 179.97438 * 17 15 14 19 19 C 1.42896 * 114.00047 * 180.02562 * 18 17 15 20 20 C 1.53005 * 109.47091 * 180.02562 * 19 18 17 21 21 H 1.09002 * 110.33140 * 305.69926 * 20 19 18 22 22 C 1.54481 * 110.37412 * 183.45082 * 20 19 18 23 23 C 1.54503 * 104.06445 * 217.08080 * 22 20 19 24 24 C 1.54482 * 104.06349 * 359.97438 * 23 22 20 25 25 O 1.44428 * 110.46595 * 68.01282 * 20 19 18 26 26 H 0.97002 * 119.99985 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47333 * 60.00267 * 9 7 2 28 28 H 1.08998 * 109.46999 * 299.99612 * 9 7 2 29 29 H 1.09007 * 109.47187 * 59.99991 * 10 9 7 30 30 H 1.09003 * 109.47143 * 299.99860 * 10 9 7 31 31 H 0.96998 * 119.99920 * 244.99847 * 14 11 10 32 32 H 1.09007 * 109.46723 * 60.00555 * 17 15 14 33 33 H 1.08990 * 109.47379 * 300.00640 * 17 15 14 34 34 H 1.08997 * 109.47176 * 60.00349 * 19 18 17 35 35 H 1.09002 * 109.47048 * 299.99917 * 19 18 17 36 36 H 1.09007 * 110.50806 * 335.72406 * 22 20 19 37 37 H 1.08993 * 110.51288 * 98.42843 * 22 20 19 38 38 H 1.08994 * 110.51469 * 118.64075 * 23 22 20 39 39 H 1.09002 * 110.51162 * 241.21807 * 23 22 20 40 40 H 1.09000 * 110.37168 * 142.80761 * 24 23 22 41 41 H 1.08998 * 110.37438 * 265.04419 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 16 1.3383 -5.2330 -0.0021 12 8 0.6649 -5.4195 -1.2394 13 8 0.6638 -5.4199 1.2345 14 7 2.5205 -6.3927 -0.0025 15 6 3.3469 -6.5129 1.0554 16 8 3.2250 -5.7714 2.0074 17 6 4.4224 -7.5685 1.0553 18 8 5.1615 -7.4957 2.2761 19 6 6.2119 -8.4591 2.3780 20 6 6.9310 -8.2898 3.7179 21 1 7.2699 -7.2609 3.8384 22 6 8.1259 -9.2642 3.8138 23 6 8.1333 -9.7046 5.2947 24 6 6.9423 -8.9437 5.9186 25 8 6.0613 -8.6639 4.8086 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8880 29 1 2.8713 -3.6047 0.8891 30 1 2.8726 -3.6039 -0.8910 31 1 2.6181 -6.9855 -0.7640 32 1 5.0947 -7.4022 0.2135 33 1 3.9646 -8.5536 0.9655 34 1 6.9209 -8.3112 1.5635 35 1 5.7914 -9.4629 2.3160 36 1 7.9716 -10.1232 3.1607 37 1 9.0557 -8.7542 3.5623 38 1 7.9826 -10.7812 5.3738 39 1 9.0678 -9.4144 5.7749 40 1 6.4371 -9.5682 6.6554 41 1 7.2835 -8.0162 6.3782 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -205.218209 kcal Electronic energy + Delta-G solvation = -24807.836400 eV Core-core repulsion = 20815.339461 eV Total energy + Delta-G solvation = -3992.496939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21162 -39.73330 -37.63898 -36.67291 -35.60294 -34.45382 -33.86929 -32.54828 -31.28368 -31.15327 -28.40941 -25.62152 -25.49844 -22.36799 -22.05802 -21.59239 -21.31971 -19.39878 -18.07015 -17.71957 -17.19612 -16.83894 -16.39783 -16.21741 -16.13082 -15.84458 -15.36597 -15.09036 -14.72229 -14.51793 -14.38893 -14.10487 -13.42040 -13.30027 -12.65079 -12.52065 -12.38447 -12.20057 -12.11148 -11.78314 -11.70725 -11.67505 -11.60690 -11.59123 -11.05692 -11.04698 -10.98155 -10.85372 -10.39612 -10.35627 -10.14926 -10.09278 -10.05681 -9.68457 -9.16691 -8.46972 -6.09434 -4.14842 0.49467 2.06889 2.51818 3.27892 3.30475 3.34868 3.37211 3.51568 4.01119 4.13560 4.19848 4.39870 4.41216 4.48564 4.63826 4.67146 4.71989 4.80686 4.84498 4.90804 4.94334 5.02201 5.09528 5.25767 5.26948 5.37330 5.44473 5.54442 5.60043 5.61679 5.75084 6.44533 6.49289 6.55194 6.75981 7.30989 7.38070 7.50029 7.83446 8.19519 8.87811 9.49474 11.01668 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.002650 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.258824 B =10563.570125 C =11788.656396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.567 3.433 12 O -0.954 6.954 13 O -0.936 6.936 14 N -1.058 6.058 15 C 0.531 3.469 16 O -0.463 6.463 17 C 0.043 3.957 18 O -0.355 6.355 19 C 0.067 3.933 20 C 0.075 3.925 21 H 0.081 0.919 22 C -0.148 4.148 23 C -0.155 4.155 24 C 0.041 3.959 25 O -0.360 6.360 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.428 0.572 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.197 -22.489 3.114 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.710 4.710 11 S 2.667 3.333 12 O -0.944 6.944 13 O -0.926 6.926 14 N -0.821 5.821 15 C 0.315 3.685 16 O -0.332 6.332 17 C -0.038 4.038 18 O -0.273 6.273 19 C -0.010 4.010 20 C 0.017 3.983 21 H 0.099 0.901 22 C -0.186 4.186 23 C -0.193 4.193 24 C -0.036 4.036 25 O -0.278 6.278 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.263 0.737 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.750 -21.948 4.018 27.900 hybrid contribution 1.386 0.613 -0.683 1.662 sum 18.136 -21.335 3.336 28.200 Atomic orbital electron populations 1.69945 1.06104 1.27324 1.49496 1.25063 0.95000 0.99539 0.94883 0.86499 0.79467 0.82412 0.78713 1.20104 1.21079 1.20016 1.20940 0.93074 0.89600 1.52264 0.92012 1.18989 0.92626 0.90298 0.99043 1.30342 1.13725 1.16120 1.10808 1.06709 0.74903 0.77215 0.74469 1.93590 1.70415 1.85322 1.45085 1.93605 1.70174 1.84283 1.44554 1.55428 1.49309 1.50680 1.26650 1.20177 0.81756 0.85140 0.81389 1.90957 1.68380 1.41958 1.31854 1.22301 0.93727 0.98296 0.89501 1.88095 1.46871 1.56124 1.36177 1.22655 0.89618 0.92680 0.96051 1.23000 0.89202 0.99018 0.87031 0.90112 1.22921 0.98486 0.99724 0.97466 1.22941 0.99566 1.01481 0.95299 1.23431 0.90619 0.99091 0.90452 1.89279 1.29326 1.88439 1.20787 0.92463 0.94735 0.94538 0.85012 0.86021 0.73737 0.89223 0.89303 0.91414 0.92022 0.90360 0.89986 0.90557 0.90363 0.88972 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 10 C -0.58 -11.59 5.82 37.16 0.22 -11.37 16 11 S 2.57 47.06 5.11 -107.50 -0.55 46.51 16 12 O -0.95 -18.76 18.08 -57.54 -1.04 -19.80 16 13 O -0.94 -21.03 17.04 -64.78 -1.10 -22.13 16 14 N -1.06 -13.25 5.60 31.22 0.17 -13.07 16 15 C 0.53 7.41 7.65 -10.99 -0.08 7.33 16 16 O -0.46 -8.91 14.60 -22.95 -0.34 -9.24 16 17 C 0.04 0.40 6.42 36.01 0.23 0.63 16 18 O -0.35 -4.35 9.88 -57.42 -0.57 -4.92 16 19 C 0.07 0.54 5.55 37.16 0.21 0.75 16 20 C 0.08 0.66 3.57 -25.95 -0.09 0.57 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 22 C -0.15 -0.81 6.63 -25.17 -0.17 -0.98 16 23 C -0.16 -0.83 7.09 -25.16 -0.18 -1.01 16 24 C 0.04 0.32 7.63 37.94 0.29 0.61 16 25 O -0.36 -4.16 11.35 -35.55 -0.40 -4.56 16 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.13 2.65 7.19 -51.92 -0.37 2.28 16 30 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 31 H 0.43 3.25 8.79 -34.47 -0.30 2.95 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.35 7.87 -51.93 -0.41 -0.06 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -40.35 361.45 -8.91 -49.26 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.12 Total: -1.65 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.13 Total: -16.29 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.91 Total: -39.22 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -3.45 Total: -60.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 47.06 SS G_CDS: -0.55 Total: 46.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.35 -8.91 -49.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.958 kcal (2) G-P(sol) polarization free energy of solvation -40.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds