Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35036 * 126.39738 * 2 1 4 4 N 1.30500 * 108.69924 * 179.82352 * 3 2 1 5 5 C 1.34130 * 109.25757 * 0.43789 * 4 3 2 6 6 C 1.34672 * 108.01692 * 359.73196 * 5 4 3 7 7 C 1.50698 * 126.59014 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47581 * 95.03238 * 7 6 5 9 9 S 1.65600 * 120.00175 * 164.99676 * 8 7 6 10 10 O 1.42096 * 106.40244 * 178.54261 * 9 8 7 11 11 O 1.42094 * 106.40282 * 311.46433 * 9 8 7 12 12 C 1.76198 * 107.21487 * 65.00368 * 9 8 7 13 13 C 1.38655 * 119.87460 * 269.72573 * 12 9 8 14 14 C 1.38620 * 120.49763 * 179.72412 * 13 12 9 15 15 C 1.37637 * 120.25111 * 0.55127 * 14 13 12 16 16 C 1.40696 * 119.73962 * 359.72928 * 15 14 13 17 17 C 1.41397 * 120.24098 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00207 * 204.36563 * 17 16 15 19 19 C 1.39947 * 120.00104 * 24.35445 * 17 16 15 20 20 N 1.30818 * 119.99832 * 17.87878 * 19 17 16 21 21 Si 1.86802 * 120.00092 * 197.87623 * 19 17 16 22 22 H 1.48501 * 109.47182 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46923 * 120.00107 * 21 19 17 24 24 H 1.48497 * 109.47244 * 240.00262 * 21 19 17 25 25 C 1.37597 * 119.87511 * 90.00304 * 12 9 8 26 26 H 1.09000 * 109.47007 * 269.69721 * 1 2 3 27 27 H 1.09001 * 109.47222 * 149.69139 * 1 2 3 28 28 H 1.08997 * 109.46610 * 29.69098 * 1 2 3 29 29 H 1.08001 * 125.65277 * 359.97097 * 3 2 1 30 30 H 1.07999 * 125.99287 * 179.72420 * 5 4 3 31 31 H 1.08999 * 109.47051 * 215.03597 * 7 6 5 32 32 H 1.08999 * 109.46919 * 335.03220 * 7 6 5 33 33 H 0.96999 * 119.99960 * 345.00362 * 8 7 6 34 34 H 1.07998 * 119.75332 * 0.02562 * 13 12 9 35 35 H 1.08002 * 119.87282 * 180.25195 * 14 13 12 36 36 H 1.07998 * 120.12890 * 179.70550 * 15 14 13 37 37 H 0.97003 * 120.00190 * 179.97438 * 20 19 17 38 38 H 1.07997 * 120.12936 * 359.97308 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0038 5 6 3.5461 -0.6506 -0.0033 6 6 2.2772 -1.1018 -0.0059 7 6 1.8363 -2.5428 -0.0142 8 7 1.5776 -2.9823 1.3591 9 16 0.7343 -4.3804 1.6362 10 8 0.6824 -4.5449 3.0466 11 8 -0.4256 -4.3182 0.8177 12 6 1.7104 -5.7097 1.0158 13 6 1.5559 -6.1255 -0.2979 14 6 2.3210 -7.1661 -0.8011 15 6 3.2359 -7.8062 0.0037 16 6 3.3970 -7.3965 1.3400 17 6 4.3342 -8.0462 2.1759 18 1 4.2041 -8.0300 3.2479 19 6 5.4305 -8.7105 1.6142 20 7 5.7919 -8.4516 0.3839 21 14 6.3775 -9.9669 2.6213 22 1 5.7716 -10.0766 3.9726 23 1 6.3205 -11.2878 1.9450 24 1 7.7929 -9.5356 2.7465 25 6 2.6189 -6.3350 1.8384 26 1 -0.3633 -0.0054 1.0277 27 1 -0.3634 -0.8872 -0.5186 28 1 -0.3632 0.8927 -0.5090 29 1 1.9335 2.1144 -0.0004 30 1 4.4369 -1.2612 -0.0066 31 1 0.9254 -2.6407 -0.6047 32 1 2.6209 -3.1603 -0.4515 33 1 1.9001 -2.4544 2.1062 34 1 0.8375 -5.6316 -0.9354 35 1 2.1952 -7.4791 -1.8271 36 1 3.8276 -8.6198 -0.3890 37 1 6.5520 -8.9117 -0.0053 38 1 2.7348 -6.0123 2.8625 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809850435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = 5.405964 kcal Electronic energy + Delta-G solvation = -24263.716497 eV Core-core repulsion = 20619.954579 eV Total energy + Delta-G solvation = -3643.761918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.20156 -37.67839 -36.77802 -35.44654 -35.35404 -34.05710 -33.87691 -30.11330 -30.02355 -29.83129 -27.15567 -25.57301 -25.39164 -21.94890 -21.54271 -21.03855 -20.27241 -19.19771 -18.05247 -17.52140 -16.84122 -16.13508 -15.97389 -15.56154 -15.21417 -14.88165 -14.70118 -14.41594 -13.85582 -13.53975 -13.39544 -13.32537 -13.09085 -13.01558 -12.66208 -12.60997 -11.94402 -11.70048 -11.66824 -11.61753 -11.45375 -11.40401 -11.02639 -10.93703 -10.62116 -10.09150 -9.84425 -9.73013 -9.72268 -9.38308 -9.27892 -8.55504 -8.08026 -7.74183 -6.95744 -4.56392 0.89291 1.86986 2.15367 2.59618 2.62321 2.99500 3.02337 3.05008 3.06528 3.58523 3.81422 4.15529 4.37867 4.45229 4.52558 4.58813 4.85471 4.88648 5.09842 5.15166 5.26727 5.37627 5.53892 5.68045 5.86134 6.01865 6.12630 6.22869 6.62256 6.62497 6.72808 6.79617 6.99739 7.03251 7.10017 7.18377 7.34056 7.68957 7.78192 7.91137 7.94729 8.37559 8.63956 8.68609 9.99600 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.003569 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.638363 B = 7843.650500 C = 8578.329375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.454 5.454 3 C 0.182 3.818 4 N -0.496 5.496 5 C -0.003 4.003 6 C -0.035 4.035 7 C 0.198 3.802 8 N -1.120 6.120 9 S 2.689 3.311 10 O -0.970 6.970 11 O -0.977 6.977 12 C -0.631 4.631 13 C -0.152 4.152 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.092 3.908 17 C -0.459 4.459 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.792 5.792 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.123 4.123 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.205 0.795 30 H 0.174 0.826 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.416 0.584 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.283 0.717 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.324 12.344 -2.848 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.137 5.137 3 C -0.100 4.100 4 N -0.214 5.214 5 C -0.153 4.153 6 C -0.151 4.151 7 C 0.071 3.929 8 N -0.878 5.878 9 S 2.785 3.215 10 O -0.961 6.961 11 O -0.967 6.967 12 C -0.723 4.723 13 C -0.173 4.173 14 C -0.139 4.139 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.488 4.488 18 H 0.102 0.898 19 C -0.143 4.143 20 N -0.417 5.417 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.144 4.144 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.221 0.779 30 H 0.192 0.808 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.249 0.751 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.543 12.665 -2.760 14.520 hybrid contribution 0.583 -1.142 0.284 1.314 sum -5.959 11.523 -2.476 13.207 Atomic orbital electron populations 1.22125 0.76445 1.04961 1.04058 1.45333 1.07729 1.06667 1.54019 1.24967 0.85726 0.93408 1.05947 1.70327 1.19339 1.12019 1.19683 1.22261 0.95933 0.91007 1.06107 1.21184 0.91384 0.89352 1.13158 1.19506 1.02129 0.88126 0.83134 1.55722 1.76700 1.42386 1.12979 1.01649 0.73744 0.72935 0.73137 1.93546 1.86741 1.85741 1.30050 1.93501 1.46097 1.86650 1.70422 1.29667 1.17461 1.20488 1.04725 1.20065 1.02350 1.01775 0.93144 1.20807 0.97364 0.97381 0.98327 1.21644 0.97425 0.99871 0.94888 1.17688 0.91110 0.89779 0.92598 1.19669 1.05692 1.28342 0.95129 0.89835 1.25937 0.97121 0.96046 0.95194 1.69780 1.22937 1.34534 1.14473 0.86207 0.79158 0.80161 0.80989 1.18195 1.19587 1.19808 1.20782 0.98187 0.97420 0.98037 0.90263 0.89065 0.89328 0.77888 0.80845 0.89823 0.88594 0.75054 0.87632 0.88366 0.85734 0.90576 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 11.01 59.85 0.66 1.12 16 2 N -0.45 -4.59 3.15 -121.36 -0.38 -4.98 16 3 C 0.18 1.87 12.56 -90.38 -1.14 0.74 16 4 N -0.50 -6.69 11.25 -14.67 -0.17 -6.85 16 5 C 0.00 -0.04 11.79 -17.81 -0.21 -0.25 16 6 C -0.04 -0.43 6.35 -81.60 -0.52 -0.94 16 7 C 0.20 2.47 6.46 -5.20 -0.03 2.43 16 8 N -1.12 -15.40 5.99 -11.66 -0.07 -15.47 16 9 S 2.69 47.48 5.74 -107.50 -0.62 46.86 16 10 O -0.97 -19.69 17.27 -57.18 -0.99 -20.68 16 11 O -0.98 -18.32 16.73 -57.18 -0.96 -19.28 16 12 C -0.63 -13.17 5.94 -39.66 -0.24 -13.40 16 13 C -0.15 -3.13 9.53 -39.29 -0.37 -3.51 16 14 C -0.12 -2.58 10.02 -39.66 -0.40 -2.98 16 15 C -0.12 -2.87 8.70 -38.87 -0.34 -3.21 16 16 C 0.09 2.32 5.58 -106.82 -0.60 1.72 16 17 C -0.46 -11.60 9.05 -37.74 -0.34 -11.94 16 18 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 19 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 20 N -0.79 -19.22 10.95 55.55 0.61 -18.61 16 21 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.12 -2.87 9.26 -38.87 -0.36 -3.23 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.66 7.30 -51.93 -0.38 0.28 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.08 0.97 6.99 -51.93 -0.36 0.61 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.42 5.18 8.64 -34.47 -0.30 4.88 16 34 H 0.11 1.92 7.59 -52.49 -0.40 1.52 16 35 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 37 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 38 H 0.11 2.52 7.60 -52.49 -0.40 2.12 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -32.05 342.47 -10.66 -42.71 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.25 Total: 10.10 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -3.97 Total: -31.76 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.01 Total: -45.90 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.94 Total: -39.96 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 16 Polarization: 47.48 SS G_CDS: -0.62 Total: 46.86 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.05 -10.66 -42.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809850435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.114 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds