Wall clock time and date at job start Tue Mar 31 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00239 * 2 1 4 4 H 1.48506 * 109.47095 * 240.00001 * 3 2 1 5 5 H 1.48501 * 109.46836 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47439 * 119.99512 * 3 2 1 7 7 C 1.37885 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99747 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99830 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.88608 * 303.87910 * 9 7 2 11 11 C 1.55154 * 111.00251 * 179.97438 * 9 7 2 12 12 C 1.54325 * 102.94223 * 206.38553 * 11 9 7 13 13 N 1.47026 * 107.26998 * 22.19216 * 12 11 9 14 14 C 1.34779 * 125.64732 * 181.02029 * 13 12 11 15 15 O 1.21621 * 119.99913 * 175.19626 * 14 13 12 16 16 C 1.47285 * 119.99954 * 354.92243 * 14 13 12 17 17 C 1.39939 * 120.13035 * 48.31023 * 16 14 13 18 18 C 1.37897 * 119.97802 * 179.97438 * 17 16 14 19 19 C 1.39730 * 120.10821 * 0.02562 * 18 17 16 20 20 C 1.38607 * 120.15230 * 0.02562 * 19 18 17 21 21 C 1.38463 * 120.17338 * 359.71293 * 20 19 18 22 22 O 1.35726 * 120.07160 * 180.29430 * 21 20 19 23 23 O 1.36373 * 108.56466 * 179.97438 * 19 18 17 24 24 C 1.43953 * 105.55204 * 17.38297 * 23 19 18 25 25 O 1.36636 * 131.35586 * 180.02562 * 18 17 16 26 26 C 1.47426 * 108.70367 * 1.28779 * 13 12 11 27 27 H 0.96997 * 120.00310 * 0.02562 * 1 2 3 28 28 H 0.96701 * 114.00193 * 56.11740 * 10 9 7 29 29 H 1.08997 * 110.72237 * 88.02236 * 11 9 7 30 30 H 1.09000 * 110.87508 * 324.82194 * 11 9 7 31 31 H 1.09000 * 109.88446 * 262.77612 * 12 11 9 32 32 H 1.08997 * 109.88221 * 141.61346 * 12 11 9 33 33 H 1.07993 * 120.00913 * 359.95119 * 17 16 14 34 34 H 1.07995 * 119.91156 * 180.02562 * 20 19 18 35 35 H 0.96696 * 114.00416 * 270.25693 * 22 21 20 36 36 H 1.09008 * 110.56250 * 91.27678 * 24 23 19 37 37 H 1.09003 * 110.56151 * 214.11491 * 24 23 19 38 38 H 1.09004 * 110.36570 * 94.47813 * 26 13 12 39 39 H 1.08994 * 110.36852 * 216.80131 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.3513 -2.5680 1.1086 11 6 2.2274 -3.7050 0.0005 12 6 1.3977 -4.8215 -0.6679 13 7 0.3463 -4.1685 -1.4614 14 6 -0.6004 -4.8009 -2.1828 15 8 -1.4758 -4.1597 -2.7322 16 6 -0.5713 -6.2679 -2.3109 17 6 -0.4092 -7.0691 -1.1750 18 6 -0.3829 -8.4422 -1.2985 19 6 -0.5174 -9.0356 -2.5564 20 6 -0.6772 -8.2468 -3.6848 21 6 -0.7102 -6.8672 -3.5706 22 8 -0.8727 -6.0970 -4.6762 23 8 -0.4580 -10.3898 -2.4062 24 6 -0.6986 -10.6340 -1.0081 25 8 -0.2403 -9.4300 -0.3653 26 6 0.5029 -2.7074 -1.3424 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2782 -1.8352 1.1502 29 1 2.4974 -3.9826 1.0194 30 1 3.1187 -3.4831 -0.5862 31 1 0.9464 -5.4555 0.0953 32 1 2.0363 -5.4188 -1.3186 33 1 -0.3043 -6.6121 -0.2022 34 1 -0.7812 -8.7095 -4.6550 35 1 -0.0438 -5.8470 -5.1068 36 1 -1.7622 -10.7856 -0.8234 37 1 -0.1232 -11.4939 -0.6652 38 1 1.0939 -2.3204 -2.1725 39 1 -0.4728 -2.2226 -1.3118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:55 Heat of formation + Delta-G solvation = -144.317542 kcal Electronic energy + Delta-G solvation = -27484.109626 eV Core-core repulsion = 23358.809587 eV Total energy + Delta-G solvation = -4125.300039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.41271 -40.01707 -38.54741 -36.97712 -36.56388 -36.01238 -34.28773 -32.17292 -31.23195 -30.01745 -29.39686 -27.85264 -26.24154 -25.25832 -23.90006 -22.99574 -22.34326 -19.85915 -19.55504 -19.14928 -17.87641 -17.61372 -17.31722 -17.04948 -16.40271 -15.97121 -15.37144 -15.13707 -14.88236 -14.78964 -14.54519 -14.28586 -14.07825 -13.82527 -13.24354 -13.11999 -13.02958 -12.87514 -12.74588 -12.08189 -11.97890 -11.62321 -11.50532 -11.05770 -10.93433 -10.84874 -10.80320 -10.57781 -10.52211 -10.21470 -9.53373 -9.39269 -9.07852 -8.70412 -8.41864 -8.23119 -7.80517 -6.31295 -4.41241 0.61732 0.90417 2.42810 2.85960 3.08708 3.20156 3.26662 3.27829 3.38959 3.64561 4.08165 4.16377 4.24005 4.38627 4.60638 4.77709 4.83547 4.90183 4.96291 5.21914 5.37599 5.57929 5.64727 5.69716 5.77448 5.81147 5.86535 6.01138 6.07954 6.20288 6.46688 6.68533 6.77577 6.80444 6.93163 7.21868 7.30667 7.51219 7.71786 7.96133 8.13349 8.60645 8.65899 9.28637 9.43716 10.75895 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.024120 B = 0.003383 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.581562 B = 8275.767712 C = 8945.279068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.119 4.119 12 C 0.101 3.899 13 N -0.602 5.602 14 C 0.568 3.432 15 O -0.525 6.525 16 C -0.131 4.131 17 C -0.056 4.056 18 C 0.019 3.981 19 C 0.063 3.937 20 C -0.136 4.136 21 C 0.167 3.833 22 O -0.473 6.473 23 O -0.307 6.307 24 C 0.213 3.787 25 O -0.304 6.304 26 C 0.093 3.907 27 H 0.272 0.728 28 H 0.387 0.613 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.395 0.605 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.062 0.938 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -18.159 -4.123 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.156 4.156 12 C -0.022 4.022 13 N -0.335 5.335 14 C 0.354 3.646 15 O -0.402 6.402 16 C -0.135 4.135 17 C -0.075 4.075 18 C -0.026 4.026 19 C 0.018 3.982 20 C -0.155 4.155 21 C 0.121 3.879 22 O -0.283 6.283 23 O -0.222 6.222 24 C 0.101 3.899 25 O -0.220 6.220 26 C -0.028 4.028 27 H 0.083 0.917 28 H 0.239 0.761 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.252 0.748 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.503 -18.488 -4.136 18.952 hybrid contribution 0.548 1.112 -0.159 1.250 sum 1.051 -17.376 -4.296 17.930 Atomic orbital electron populations 1.69548 1.06033 1.28188 1.49564 1.25082 0.95032 0.99802 0.93268 0.86440 0.79511 0.82011 0.78814 1.20004 1.21056 1.19979 1.21464 0.93684 0.90088 1.52569 0.91485 1.19610 0.85720 0.91670 0.82074 1.86058 1.51055 1.53052 1.49256 1.22644 0.97867 0.94804 1.00326 1.22163 0.89555 0.96440 0.94041 1.48686 1.28787 1.09754 1.46275 1.17359 0.81852 0.85606 0.79747 1.90827 1.35245 1.66782 1.47349 1.20185 1.05587 0.94670 0.93036 1.20177 0.99057 0.88417 0.99862 1.19536 1.05452 0.90871 0.86700 1.19654 1.01427 0.82736 0.94395 1.20093 1.06322 0.91461 0.97639 1.17753 0.96464 0.87742 0.85966 1.84862 1.34720 1.69370 1.39365 1.87323 1.87878 1.19104 1.27944 1.25667 1.01081 0.89074 0.74070 1.87428 1.81962 1.16339 1.36315 1.23382 1.02713 0.76096 1.00605 0.91746 0.76096 0.90596 0.90396 0.91973 0.92600 0.83175 0.83548 0.74819 0.89687 0.84945 0.91941 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.49 10.72 55.43 0.59 -22.90 16 2 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 3 Si 0.91 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.68 8.25 -34.44 -0.28 -13.96 16 8 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 9 C 0.25 5.89 0.89 -89.50 -0.08 5.81 16 10 O -0.58 -14.71 13.19 -35.23 -0.46 -15.18 16 11 C -0.12 -2.27 6.12 -24.90 -0.15 -2.42 16 12 C 0.10 1.73 5.73 -3.06 -0.02 1.71 16 13 N -0.60 -12.08 3.33 -171.69 -0.57 -12.65 16 14 C 0.57 11.34 7.11 -12.58 -0.09 11.25 16 15 O -0.52 -12.49 16.70 -5.57 -0.09 -12.58 16 16 C -0.13 -2.09 5.41 -104.85 -0.57 -2.66 16 17 C -0.06 -0.80 8.51 -39.07 -0.33 -1.14 16 18 C 0.02 0.24 7.13 -39.15 -0.28 -0.04 16 19 C 0.06 0.77 7.15 -38.89 -0.28 0.50 16 20 C -0.14 -1.61 9.98 -39.36 -0.39 -2.00 16 21 C 0.17 2.34 6.68 -38.76 -0.26 2.08 16 22 O -0.47 -6.48 12.49 -29.72 -0.37 -6.85 16 23 O -0.31 -3.33 11.39 -45.27 -0.52 -3.85 16 24 C 0.21 1.73 8.88 101.05 0.90 2.63 16 25 O -0.30 -3.58 11.41 -46.13 -0.53 -4.11 16 26 C 0.09 2.17 5.67 -2.41 -0.01 2.16 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.39 10.15 6.93 45.56 0.32 10.47 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 31 H 0.06 1.00 5.89 -51.93 -0.31 0.69 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.15 2.14 5.98 -52.49 -0.31 1.82 16 34 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.39 3.51 9.06 45.56 0.41 3.92 16 36 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.47 8.04 -51.93 -0.42 1.05 16 39 H 0.08 2.24 7.60 -51.93 -0.39 1.84 16 LS Contribution 331.11 15.07 4.99 4.99 Total: -1.00 -31.73 331.11 -6.70 -38.43 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -2.77 Total: 14.09 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.94 Total: 5.65 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.02 Total: -35.54 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -1.97 Total: -42.56 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.73 -6.70 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.886 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds