Wall clock time and date at job start Tue Mar 31 2020 04:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47185 * 2 1 4 4 H 1.08999 * 109.49569 * 304.93406 * 3 2 1 5 5 C 1.53193 * 109.49636 * 65.00029 * 3 2 1 6 6 N 1.46932 * 108.77501 * 174.62047 * 5 3 2 7 7 C 1.34768 * 120.63051 * 126.36453 * 6 5 3 8 8 O 1.21281 * 120.00539 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00083 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.35312 * 126.12327 * 85.02525 * 10 9 7 12 12 C 1.39869 * 107.91889 * 179.76047 * 11 10 9 13 13 N 1.30837 * 108.20188 * 0.23962 * 12 11 10 14 14 N 1.34951 * 126.12882 * 265.20063 * 10 9 7 15 15 C 1.46501 * 126.03602 * 0.02562 * 14 10 9 16 16 C 1.46925 * 118.73401 * 306.64446 * 6 5 3 17 17 C 1.52758 * 109.01255 * 53.30791 * 16 6 5 18 18 C 1.53040 * 109.38340 * 305.58719 * 17 16 6 19 19 H 1.09000 * 109.45710 * 301.21974 * 18 17 16 20 20 N 1.46497 * 109.45835 * 181.26203 * 18 17 16 21 21 C 1.36935 * 120.00345 * 84.93358 * 20 18 17 22 22 H 1.08004 * 119.99654 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00351 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99630 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00153 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46752 * 60.00093 * 25 23 21 27 27 H 1.48498 * 109.47042 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47017 * 300.00420 * 25 23 21 29 29 H 1.09002 * 109.46691 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46936 * 300.00337 * 1 2 3 31 31 H 1.08997 * 109.47059 * 60.00222 * 1 2 3 32 32 H 1.08998 * 109.47551 * 239.99828 * 2 1 3 33 33 H 1.08998 * 109.47397 * 120.00200 * 2 1 3 34 34 H 1.08993 * 109.58738 * 54.83178 * 5 3 2 35 35 H 1.08997 * 109.58385 * 294.40599 * 5 3 2 36 36 H 1.09005 * 109.46990 * 60.00442 * 9 7 6 37 37 H 1.08994 * 109.47278 * 300.00545 * 9 7 6 38 38 H 1.08002 * 126.04491 * 0.02940 * 11 10 9 39 39 H 1.08000 * 125.90176 * 180.22054 * 12 11 10 40 40 H 1.08999 * 109.47098 * 270.25891 * 15 14 10 41 41 H 1.08998 * 109.47303 * 30.25669 * 15 14 10 42 42 H 1.08994 * 109.47129 * 150.25391 * 15 14 10 43 43 H 1.09003 * 109.58460 * 173.14285 * 16 6 5 44 44 H 1.08999 * 109.58426 * 293.56640 * 16 6 5 45 45 H 1.09003 * 109.56017 * 185.55044 * 17 16 6 46 46 H 1.08994 * 109.36085 * 65.49913 * 17 16 6 47 47 H 0.97003 * 119.99945 * 264.92832 * 20 18 17 48 48 H 0.97000 * 119.99878 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6351 2.1280 1.3088 6 7 2.2409 3.4660 1.3490 7 6 1.4804 4.5579 1.5624 8 8 0.2840 4.4417 1.7241 9 6 2.1167 5.9234 1.6015 10 6 1.0568 6.9646 1.8537 11 6 0.5842 7.3451 3.0632 12 6 -0.3818 8.3352 2.8557 13 7 -0.4890 8.5380 1.5676 14 7 0.4065 7.6821 0.9137 15 6 0.6059 7.5864 -0.5345 16 6 3.6906 3.5913 1.1459 17 6 4.0733 2.8889 -0.1555 18 6 3.5655 1.4456 -0.1220 19 1 3.9994 0.9278 0.7334 20 7 3.9579 0.7615 -1.3566 21 6 5.1965 0.1862 -1.4568 22 1 5.8843 0.2372 -0.6257 23 6 5.5680 -0.4625 -2.6264 24 7 4.7299 -0.5242 -3.6394 25 14 7.2579 -1.2466 -2.7633 26 1 7.4077 -2.2861 -1.7134 27 1 7.4069 -1.8711 -4.1023 28 1 8.3023 -0.2065 -2.5825 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.9912 1.5400 2.1546 35 1 0.5497 2.2168 1.3541 36 1 2.6042 6.1245 0.6475 37 1 2.8561 5.9570 2.4015 38 1 0.9003 6.9565 4.0200 39 1 -0.9425 8.8442 3.6257 40 1 1.3842 8.2851 -0.8411 41 1 0.9063 6.5712 -0.7936 42 1 -0.3247 7.8316 -1.0463 43 1 3.9611 4.6454 1.0837 44 1 4.2178 3.1251 1.9782 45 1 5.1578 2.8906 -0.2659 46 1 3.6208 3.4144 -0.9964 47 1 3.3402 0.7159 -2.1032 48 1 4.9893 -0.9778 -4.4566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037829014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:53 Heat of formation + Delta-G solvation = 48.136322 kcal Electronic energy + Delta-G solvation = -27743.097690 eV Core-core repulsion = 24027.820679 eV Total energy + Delta-G solvation = -3715.277011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42773 -40.07743 -37.85498 -34.81897 -33.91151 -33.50877 -32.32398 -31.78411 -29.59750 -29.09903 -27.50993 -26.82628 -24.92285 -23.89318 -22.85109 -21.25951 -20.92237 -20.55543 -19.67831 -18.86022 -17.37830 -17.10276 -16.84064 -15.81840 -15.51414 -15.38136 -14.94533 -14.50023 -14.19382 -13.94580 -13.92779 -13.70673 -13.45616 -13.32729 -13.20510 -12.83984 -12.80651 -12.67704 -12.55377 -12.22165 -12.06487 -11.81529 -11.68171 -11.34128 -10.97666 -10.90943 -10.76542 -10.73478 -10.40282 -10.28380 -10.20833 -9.92940 -9.77209 -9.65559 -9.33176 -8.95483 -8.59457 -8.54901 -7.02874 -5.83208 -3.12239 1.70977 2.39765 2.56580 2.72258 3.09694 3.38253 3.43346 3.44409 4.24891 4.43356 4.48495 4.52393 4.73411 4.94344 4.98869 5.06020 5.09876 5.16812 5.19880 5.28032 5.28438 5.39449 5.50766 5.55089 5.55716 5.61879 5.63661 5.64765 5.84543 5.95392 6.01751 6.07062 6.09974 6.24870 6.29577 6.34276 6.40514 6.49524 6.56804 6.61106 6.76310 6.87115 6.90426 6.98556 7.41617 7.61325 7.62457 8.13731 8.34907 9.46394 10.03377 10.38079 11.39058 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.002953 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.865921 B = 9479.661211 C =10075.470109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.605 5.605 7 C 0.516 3.484 8 O -0.535 6.535 9 C -0.081 4.081 10 C 0.107 3.893 11 C -0.259 4.259 12 C 0.045 3.955 13 N -0.298 5.298 14 N -0.366 5.366 15 C 0.098 3.902 16 C 0.105 3.895 17 C -0.153 4.153 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.145 0.855 39 H 0.182 0.818 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 13.353 11.569 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.338 5.338 7 C 0.302 3.698 8 O -0.412 6.412 9 C -0.123 4.123 10 C -0.022 4.022 11 C -0.289 4.289 12 C -0.140 4.140 13 N -0.120 5.120 14 N -0.149 5.149 15 C -0.043 4.043 16 C -0.018 4.018 17 C -0.194 4.194 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.162 0.838 39 H 0.199 0.801 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.639 13.852 10.568 18.645 hybrid contribution 1.351 -0.940 0.116 1.650 sum -5.288 12.911 10.684 17.573 Atomic orbital electron populations 1.21842 0.96805 1.01077 1.01281 1.21450 0.94371 0.95668 1.03501 1.21781 0.97632 0.96307 0.96677 0.91316 1.21763 0.99442 0.81252 0.97842 1.48162 1.08553 1.06682 1.70397 1.20231 0.87001 0.85554 0.76996 1.90732 1.14656 1.86344 1.49501 1.20328 0.96312 0.89970 1.05654 1.20291 0.96807 0.95343 0.89710 1.21142 1.05022 1.05173 0.97531 1.23760 0.98445 0.98072 0.93743 1.77327 1.12400 1.14994 1.07236 1.48399 1.29969 1.30111 1.06379 1.21861 1.03703 1.03283 0.75479 1.21832 0.79388 1.01102 0.99528 1.22621 1.02320 0.99407 0.95063 1.20178 0.90741 0.90485 0.91289 0.93379 1.42401 1.16454 1.64453 1.12714 1.19159 0.91775 1.27563 0.98622 0.91285 1.24728 0.98128 1.01464 0.96435 1.69646 1.35345 1.48215 1.04764 0.86306 0.84122 0.79190 0.76770 1.21290 1.21751 1.21318 0.93133 0.93221 0.93044 0.89781 0.92420 0.91574 0.89169 0.87677 0.86208 0.83758 0.80104 0.90612 0.89629 0.89116 0.90558 0.91191 0.90407 0.92269 0.78206 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.10 -1.61 1.92 -90.50 -0.17 -1.78 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.64 5.33 -3.71 -0.02 1.62 16 6 N -0.60 -7.62 2.98 -173.03 -0.52 -8.13 16 7 C 0.52 6.76 7.69 -10.99 -0.08 6.67 16 8 O -0.54 -9.11 15.45 5.56 0.09 -9.02 16 9 C -0.08 -0.79 4.15 -29.03 -0.12 -0.91 16 10 C 0.11 1.28 5.42 -82.26 -0.45 0.83 16 11 C -0.26 -3.03 10.72 -40.01 -0.43 -3.46 16 12 C 0.05 0.53 12.03 -17.36 -0.21 0.32 16 13 N -0.30 -4.07 12.58 30.62 0.39 -3.68 16 14 N -0.37 -4.58 4.01 -63.89 -0.26 -4.84 16 15 C 0.10 0.90 11.06 59.85 0.66 1.56 16 16 C 0.10 1.16 6.31 -3.93 -0.02 1.13 16 17 C -0.15 -2.28 5.64 -26.83 -0.15 -2.43 16 18 C 0.18 3.22 2.20 -67.89 -0.15 3.07 16 19 H 0.05 0.87 8.08 -51.93 -0.42 0.46 16 20 N -0.72 -16.42 4.33 -53.39 -0.23 -16.65 16 21 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 22 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 25 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.58 7.22 -51.93 -0.37 1.20 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.33 5.72 -51.93 -0.30 1.03 16 36 H 0.11 0.83 7.05 -51.93 -0.37 0.46 16 37 H 0.12 0.85 7.95 -51.93 -0.41 0.44 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.74 7.56 -51.93 -0.39 0.35 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.63 5.94 -51.93 -0.31 0.33 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.38 9.55 7.51 -40.82 -0.31 9.24 16 48 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -32.96 383.56 -8.07 -41.03 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.85 Total: 9.02 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.17 Total: -3.72 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.11 Total: -59.53 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.96 -8.07 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037829014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.169 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds