Wall clock time and date at job start Tue Mar 31 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47185 * 2 1 4 4 H 1.08999 * 109.49569 * 304.93406 * 3 2 1 5 5 C 1.53193 * 109.49636 * 65.00029 * 3 2 1 6 6 N 1.46932 * 108.77501 * 174.62047 * 5 3 2 7 7 C 1.34768 * 120.63051 * 126.36453 * 6 5 3 8 8 O 1.21281 * 120.00539 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00083 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.35312 * 126.12327 * 85.02525 * 10 9 7 12 12 C 1.39869 * 107.91889 * 179.76047 * 11 10 9 13 13 N 1.30837 * 108.20188 * 0.23962 * 12 11 10 14 14 N 1.34951 * 126.12882 * 265.20063 * 10 9 7 15 15 C 1.46501 * 126.03602 * 0.02562 * 14 10 9 16 16 C 1.46925 * 118.73401 * 306.64446 * 6 5 3 17 17 C 1.52758 * 109.01255 * 53.30791 * 16 6 5 18 18 C 1.53040 * 109.38340 * 305.58719 * 17 16 6 19 19 H 1.09000 * 109.45710 * 301.21974 * 18 17 16 20 20 N 1.46497 * 109.45835 * 181.26203 * 18 17 16 21 21 C 1.36935 * 120.00345 * 84.93358 * 20 18 17 22 22 H 1.08004 * 119.99654 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00351 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99630 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00153 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46752 * 60.00093 * 25 23 21 27 27 H 1.48498 * 109.47042 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47017 * 300.00420 * 25 23 21 29 29 H 1.09002 * 109.46691 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46936 * 300.00337 * 1 2 3 31 31 H 1.08997 * 109.47059 * 60.00222 * 1 2 3 32 32 H 1.08998 * 109.47551 * 239.99828 * 2 1 3 33 33 H 1.08998 * 109.47397 * 120.00200 * 2 1 3 34 34 H 1.08993 * 109.58738 * 54.83178 * 5 3 2 35 35 H 1.08997 * 109.58385 * 294.40599 * 5 3 2 36 36 H 1.09005 * 109.46990 * 60.00442 * 9 7 6 37 37 H 1.08994 * 109.47278 * 300.00545 * 9 7 6 38 38 H 1.08002 * 126.04491 * 0.02940 * 11 10 9 39 39 H 1.08000 * 125.90176 * 180.22054 * 12 11 10 40 40 H 1.08999 * 109.47098 * 270.25891 * 15 14 10 41 41 H 1.08998 * 109.47303 * 30.25669 * 15 14 10 42 42 H 1.08994 * 109.47129 * 150.25391 * 15 14 10 43 43 H 1.09003 * 109.58460 * 173.14285 * 16 6 5 44 44 H 1.08999 * 109.58426 * 293.56640 * 16 6 5 45 45 H 1.09003 * 109.56017 * 185.55044 * 17 16 6 46 46 H 1.08994 * 109.36085 * 65.49913 * 17 16 6 47 47 H 0.97003 * 119.99945 * 264.92832 * 20 18 17 48 48 H 0.97000 * 119.99878 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6351 2.1280 1.3088 6 7 2.2409 3.4660 1.3490 7 6 1.4804 4.5579 1.5624 8 8 0.2840 4.4417 1.7241 9 6 2.1167 5.9234 1.6015 10 6 1.0568 6.9646 1.8537 11 6 0.5842 7.3451 3.0632 12 6 -0.3818 8.3352 2.8557 13 7 -0.4890 8.5380 1.5676 14 7 0.4065 7.6821 0.9137 15 6 0.6059 7.5864 -0.5345 16 6 3.6906 3.5913 1.1459 17 6 4.0733 2.8889 -0.1555 18 6 3.5655 1.4456 -0.1220 19 1 3.9994 0.9278 0.7334 20 7 3.9579 0.7615 -1.3566 21 6 5.1965 0.1862 -1.4568 22 1 5.8843 0.2372 -0.6257 23 6 5.5680 -0.4625 -2.6264 24 7 4.7299 -0.5242 -3.6394 25 14 7.2579 -1.2466 -2.7633 26 1 7.4077 -2.2861 -1.7134 27 1 7.4069 -1.8711 -4.1023 28 1 8.3023 -0.2065 -2.5825 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.9912 1.5400 2.1546 35 1 0.5497 2.2168 1.3541 36 1 2.6042 6.1245 0.6475 37 1 2.8561 5.9570 2.4015 38 1 0.9003 6.9565 4.0200 39 1 -0.9425 8.8442 3.6257 40 1 1.3842 8.2851 -0.8411 41 1 0.9063 6.5712 -0.7936 42 1 -0.3247 7.8316 -1.0463 43 1 3.9611 4.6454 1.0837 44 1 4.2178 3.1251 1.9782 45 1 5.1578 2.8906 -0.2659 46 1 3.6208 3.4144 -0.9964 47 1 3.3402 0.7159 -2.1032 48 1 4.9893 -0.9778 -4.4566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037829014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:52 Heat of formation + Delta-G solvation = 27.357271 kcal Electronic energy + Delta-G solvation = -27743.998738 eV Core-core repulsion = 24027.820679 eV Total energy + Delta-G solvation = -3716.178058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28308 -41.15335 -39.10547 -36.17310 -35.36824 -34.34740 -33.43535 -33.15825 -31.05690 -30.28978 -28.53636 -27.58908 -26.43044 -25.10113 -24.35275 -22.21622 -22.09610 -21.60142 -20.86255 -19.87636 -19.01879 -18.31200 -17.73431 -16.83876 -16.75498 -16.49064 -16.19299 -15.61896 -15.52355 -15.28016 -14.94763 -14.86852 -14.71325 -14.52458 -14.37459 -14.00777 -13.74323 -13.51270 -13.50314 -13.29576 -13.09453 -13.04393 -12.85446 -12.77308 -12.63545 -12.51627 -12.19750 -12.01475 -11.82845 -11.60433 -11.56784 -11.51223 -11.06963 -11.01437 -10.77216 -10.20685 -9.64573 -9.44012 -8.93211 -7.88953 -5.15976 0.84983 1.50189 1.51782 1.57463 1.58207 1.63565 1.85864 2.14625 2.59834 3.42900 3.45910 3.57411 3.69882 3.79828 3.86921 4.02910 4.06754 4.11527 4.28251 4.35613 4.36040 4.37682 4.44099 4.45744 4.49328 4.61852 4.65036 4.77816 4.79511 4.81214 4.83608 4.87975 4.92708 5.02740 5.08088 5.17822 5.21546 5.29650 5.39696 5.48499 5.54430 5.60786 5.68966 5.76681 6.08520 6.32379 6.42882 6.76147 7.13998 7.39218 8.16266 8.38605 9.34410 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.002953 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.865921 B = 9479.661211 C =10075.470109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.092 4.092 4 H 0.050 0.950 5 C 0.127 3.873 6 N -0.604 5.604 7 C 0.517 3.483 8 O -0.579 6.579 9 C -0.074 4.074 10 C 0.096 3.904 11 C -0.273 4.273 12 C 0.039 3.961 13 N -0.336 5.336 14 N -0.378 5.378 15 C 0.091 3.909 16 C 0.111 3.889 17 C -0.144 4.144 18 C 0.177 3.823 19 H 0.047 0.953 20 N -0.732 5.732 21 C -0.228 4.228 22 H 0.079 0.921 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.965 3.035 26 H -0.280 1.280 27 H -0.303 1.303 28 H -0.277 1.277 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.208 0.792 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.370 0.630 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 14.571 13.761 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.336 5.336 7 C 0.305 3.695 8 O -0.459 6.459 9 C -0.115 4.115 10 C -0.033 4.033 11 C -0.302 4.302 12 C -0.146 4.146 13 N -0.158 5.158 14 N -0.160 5.160 15 C -0.049 4.049 16 C -0.011 4.011 17 C -0.185 4.185 18 C 0.069 3.931 19 H 0.065 0.935 20 N -0.370 5.370 21 C -0.360 4.360 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.623 5.623 25 Si 0.795 3.205 26 H -0.207 1.207 27 H -0.230 1.230 28 H -0.203 1.203 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.225 0.775 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.134 0.866 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.201 0.799 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.394 15.104 12.812 20.527 hybrid contribution 0.911 -1.310 -0.505 1.673 sum -4.483 13.794 12.307 19.022 Atomic orbital electron populations 1.21773 0.95135 1.01812 1.01565 1.21359 0.95837 0.95515 1.01896 1.21619 0.96015 0.96214 0.97325 0.93110 1.21591 0.99112 0.82136 0.96808 1.48204 1.09200 1.06153 1.70031 1.20777 0.86420 0.86571 0.75706 1.90722 1.16675 1.87009 1.51453 1.20435 0.96048 0.86814 1.08219 1.20709 0.97199 0.95583 0.89809 1.21505 1.05095 1.05249 0.98390 1.24302 0.98448 0.98047 0.93783 1.77267 1.13712 1.16485 1.08316 1.48688 1.29848 1.30105 1.07398 1.22061 1.04461 1.04116 0.74303 1.21917 0.78337 1.03216 0.97609 1.22408 1.01500 0.97419 0.97188 1.20440 0.92103 0.91677 0.88868 0.93470 1.42590 1.15400 1.65071 1.13977 1.19554 0.92562 1.25608 0.98251 0.90358 1.25459 1.01436 1.03316 0.96660 1.69810 1.37138 1.50138 1.05178 0.85324 0.80629 0.78474 0.76022 1.20679 1.22964 1.20300 0.92217 0.91877 0.93745 0.93538 0.91721 0.90108 0.90043 0.85395 0.82750 0.82108 0.77536 0.88409 0.89288 0.89288 0.86640 0.89289 0.91201 0.93401 0.79880 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.67 71.98 0.70 -3.21 16 2 C -0.11 -3.38 5.31 30.59 0.16 -3.22 16 3 C -0.09 -2.79 1.92 -10.72 -0.02 -2.81 16 4 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 5 C 0.13 3.23 5.33 86.36 0.46 3.69 16 6 N -0.60 -13.41 2.98 -819.75 -2.44 -15.85 16 7 C 0.52 12.10 7.69 87.66 0.67 12.78 16 8 O -0.58 -18.84 15.45 -3.03 -0.05 -18.89 16 9 C -0.07 -1.16 4.15 29.10 0.12 -1.03 16 10 C 0.10 2.06 5.42 41.40 0.22 2.28 16 11 C -0.27 -5.82 10.72 21.99 0.24 -5.58 16 12 C 0.04 0.85 12.03 85.24 1.02 1.88 16 13 N -0.34 -8.90 12.58 -57.02 -0.72 -9.61 16 14 N -0.38 -8.92 4.01 -356.04 -1.43 -10.35 16 15 C 0.09 1.55 11.06 127.77 1.41 2.96 16 16 C 0.11 2.01 6.31 86.22 0.54 2.56 16 17 C -0.14 -4.00 5.64 30.53 0.17 -3.83 16 18 C 0.18 6.08 2.20 45.02 0.10 6.18 16 19 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 20 N -0.73 -33.75 4.33 -322.81 -1.40 -35.15 16 21 C -0.23 -11.71 9.93 84.03 0.83 -10.87 16 22 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 23 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 24 N -0.97 -57.78 13.06 21.65 0.28 -57.49 16 25 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 28 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.53 6.70 -2.39 -0.02 1.51 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.81 7.22 -2.39 -0.02 1.80 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.29 5.72 -2.39 -0.01 2.27 16 36 H 0.13 1.43 7.05 -2.38 -0.02 1.42 16 37 H 0.15 1.35 7.95 -2.39 -0.02 1.33 16 38 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.21 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.42 7.56 -2.39 -0.02 1.40 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.12 1.27 5.94 -2.39 -0.01 1.25 16 44 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.37 19.04 7.51 -92.71 -0.70 18.35 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -73.69 383.56 3.64 -70.05 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.26 Total: 32.87 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 7.11 Total: -1.98 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -5.70 Total: -128.46 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.05 Total: -18.89 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -73.69 3.64 -70.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037829014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.403 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds