Wall clock time and date at job start Tue Mar 31 2020 04:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 H 1.09007 * 109.49432 * 54.93283 * 3 2 1 5 5 C 1.52760 * 109.59240 * 294.98107 * 3 2 1 6 6 N 1.46925 * 109.00575 * 185.53609 * 5 3 2 7 7 C 1.34777 * 120.62614 * 233.57902 * 6 5 3 8 8 O 1.21283 * 120.00463 * 359.72727 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.44850 * 7 6 5 10 10 N 1.46499 * 109.47257 * 180.27849 * 9 7 6 11 11 C 1.35047 * 126.40012 * 265.02743 * 10 9 7 12 12 N 1.30494 * 108.70315 * 179.97438 * 11 10 9 13 13 C 1.34127 * 109.25590 * 359.97438 * 12 11 10 14 14 C 1.34668 * 108.02122 * 359.74063 * 13 12 11 15 15 C 1.50700 * 126.59134 * 180.28330 * 14 13 12 16 16 C 1.46927 * 118.74028 * 53.31181 * 6 5 3 17 17 C 1.53193 * 108.77386 * 306.63705 * 16 6 5 18 18 C 1.53043 * 109.49647 * 174.99405 * 3 2 1 19 19 H 1.09001 * 109.45653 * 61.33198 * 18 3 2 20 20 N 1.46495 * 109.45088 * 301.36498 * 18 3 2 21 21 C 1.36937 * 119.99465 * 154.93816 * 20 18 3 22 22 H 1.07993 * 120.00676 * 359.97438 * 21 20 18 23 23 C 1.38821 * 119.99540 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99990 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99795 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46775 * 90.00333 * 25 23 21 27 27 H 1.48500 * 109.47043 * 210.00383 * 25 23 21 28 28 H 1.48495 * 109.47448 * 330.00407 * 25 23 21 29 29 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46849 * 300.00516 * 1 2 3 31 31 H 1.09004 * 109.46580 * 59.99870 * 1 2 3 32 32 H 1.08997 * 109.46849 * 239.99484 * 2 1 3 33 33 H 1.09004 * 109.46580 * 120.00130 * 2 1 3 34 34 H 1.09000 * 109.50779 * 65.65007 * 5 3 2 35 35 H 1.09004 * 109.43086 * 305.37497 * 5 3 2 36 36 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 37 37 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 38 38 H 1.07997 * 125.64256 * 359.96119 * 11 10 9 39 39 H 1.08008 * 125.98944 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47052 * 270.15508 * 15 14 13 41 41 H 1.08997 * 109.47554 * 30.15787 * 15 14 13 42 42 H 1.09008 * 109.47163 * 150.15742 * 15 14 13 43 43 H 1.08997 * 109.58480 * 66.42812 * 16 6 5 44 44 H 1.08999 * 109.58556 * 186.85469 * 16 6 5 45 45 H 1.08996 * 109.49520 * 174.58628 * 17 16 6 46 46 H 1.09000 * 109.49888 * 294.65354 * 17 16 6 47 47 H 0.96993 * 120.00291 * 334.93782 * 20 18 3 48 48 H 0.97001 * 120.00002 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9822 0.8411 5 6 1.6379 2.1280 -1.3045 6 7 2.2453 3.4651 -1.3494 7 6 1.4858 4.5573 -1.5655 8 8 0.2898 4.4415 -1.7299 9 6 2.1219 5.9232 -1.5964 10 7 1.0918 6.9362 -1.8390 11 6 0.7500 7.4610 -3.0355 12 7 -0.2054 8.3310 -2.8533 13 6 -0.5052 8.3917 -1.5474 14 6 0.2909 7.5223 -0.8963 15 6 0.3008 7.2498 0.5858 16 6 3.6954 3.5893 -1.1485 17 6 4.0738 2.8880 0.1598 18 6 3.5654 1.4449 0.1259 19 1 4.0010 0.9264 -0.7282 20 7 3.9539 0.7613 1.3619 21 6 5.1915 0.1843 1.4652 22 1 5.8809 0.2328 0.6353 23 6 5.5599 -0.4630 2.6366 24 7 4.7195 -0.5226 3.6479 25 14 7.2479 -1.2507 2.7773 26 1 8.2136 -0.2590 3.3149 27 1 7.1749 -2.4174 3.6931 28 1 7.6969 -1.7020 1.4357 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.5525 2.2180 -1.3488 35 1 1.9923 1.5370 -2.1491 36 1 2.6068 6.1199 -0.6401 37 1 2.8634 5.9607 -2.3943 38 1 1.1941 7.2035 -3.9857 39 1 -1.2563 9.0241 -1.0973 40 1 1.0019 7.9261 1.0749 41 1 -0.6987 7.4075 0.9910 42 1 0.6065 6.2187 0.7637 43 1 4.2211 3.1200 -1.9801 44 1 3.9672 4.6433 -1.0899 45 1 5.1579 2.8892 0.2729 46 1 3.6198 3.4145 0.9994 47 1 3.3346 0.7174 2.1072 48 1 4.9768 -0.9752 4.4663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037874865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:25 Heat of formation + Delta-G solvation = 33.596503 kcal Electronic energy + Delta-G solvation = -27860.107471 eV Core-core repulsion = 24144.199966 eV Total energy + Delta-G solvation = -3715.907505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26572 -40.26202 -37.99121 -34.95161 -34.26068 -33.79224 -32.05816 -31.85201 -29.68513 -29.42678 -27.64937 -26.52598 -24.98956 -23.97518 -22.93977 -21.57424 -21.01132 -20.72059 -19.76726 -19.09929 -17.70784 -17.18276 -17.13592 -15.93015 -15.74119 -15.23566 -14.89236 -14.56496 -14.22364 -13.96439 -13.84873 -13.75463 -13.48082 -13.37914 -13.25436 -13.11787 -12.91413 -12.85925 -12.52512 -12.47394 -12.19641 -11.96343 -11.76576 -11.40561 -11.03612 -10.95163 -10.82797 -10.49864 -10.37294 -10.30888 -10.23861 -10.04384 -9.84521 -9.71215 -9.50678 -9.00080 -8.69283 -8.36519 -7.07003 -5.86703 -3.16065 1.82882 2.32594 2.44279 2.96691 3.12592 3.35393 3.41101 3.42997 4.14843 4.33071 4.48990 4.55116 4.61001 4.63810 4.82869 5.02321 5.07400 5.11418 5.17508 5.30646 5.32334 5.38247 5.40402 5.50394 5.55787 5.57131 5.65444 5.72672 5.77381 5.86934 5.99767 6.03395 6.16653 6.22958 6.24605 6.26860 6.35067 6.40010 6.54295 6.65989 6.69654 6.84757 6.91905 7.01673 7.24781 7.59498 7.92234 7.98595 8.31159 9.42915 9.99246 10.33886 11.35506 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002986 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.837060 B = 9375.045354 C = 9918.258372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.601 5.601 7 C 0.496 3.504 8 O -0.527 6.527 9 C 0.085 3.915 10 N -0.442 5.442 11 C 0.186 3.814 12 N -0.492 5.492 13 C -0.032 4.032 14 C -0.010 4.010 15 C -0.079 4.079 16 C 0.103 3.897 17 C -0.153 4.153 18 C 0.184 3.816 19 H 0.049 0.951 20 N -0.720 5.720 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.202 0.798 39 H 0.167 0.833 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 12.233 -10.118 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.334 5.334 7 C 0.281 3.719 8 O -0.404 6.404 9 C -0.042 4.042 10 N -0.125 5.125 11 C -0.096 4.096 12 N -0.210 5.210 13 C -0.179 4.179 14 C -0.124 4.124 15 C -0.137 4.137 16 C -0.020 4.020 17 C -0.194 4.194 18 C 0.073 3.927 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.218 0.782 39 H 0.185 0.815 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.677 12.440 -10.813 17.433 hybrid contribution 1.384 -1.043 1.055 2.029 sum -4.293 11.396 -9.758 15.605 Atomic orbital electron populations 1.21847 0.96762 1.01145 1.01275 1.21451 0.94402 0.95543 1.03571 1.21707 0.97716 0.96396 0.96611 0.91255 1.21706 0.99452 0.80992 0.98095 1.48175 1.08592 1.06713 1.69957 1.20601 0.87440 0.86031 0.77779 1.90769 1.14386 1.86040 1.49165 1.21746 0.90106 0.86074 1.06238 1.44912 1.28912 1.30562 1.08151 1.24828 0.98197 0.96694 0.89832 1.70239 1.13455 1.19366 1.17922 1.21982 1.03173 1.03075 0.89713 1.21238 0.97717 1.00441 0.93044 1.20226 1.03635 1.02032 0.87770 1.21961 0.79189 1.00949 0.99896 1.22713 1.02461 0.99469 0.94764 1.20175 0.90710 0.90439 0.91369 0.93338 1.42401 1.16533 1.64383 1.12663 1.19193 0.91786 1.27624 0.98624 0.91227 1.24736 0.98137 1.01404 0.96428 1.69654 1.35190 1.48234 1.04767 0.86232 0.84046 0.78795 0.77336 1.21757 1.21785 1.20776 0.93068 0.92985 0.93281 0.92404 0.89681 0.89121 0.91444 0.86166 0.85855 0.78166 0.81538 0.90926 0.89873 0.91789 0.90884 0.90788 0.90299 0.92126 0.78169 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16 3 C -0.10 -1.56 1.91 -90.72 -0.17 -1.73 16 4 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 5 C 0.12 1.57 5.30 -3.93 -0.02 1.55 16 6 N -0.60 -7.09 2.98 -173.03 -0.52 -7.60 16 7 C 0.50 6.11 7.77 -10.98 -0.09 6.02 16 8 O -0.53 -8.68 15.84 5.55 0.09 -8.60 16 9 C 0.09 0.75 4.62 -5.19 -0.02 0.72 16 10 N -0.44 -4.96 2.24 -115.27 -0.26 -5.22 16 11 C 0.19 2.18 12.56 -90.38 -1.13 1.04 16 12 N -0.49 -6.87 11.25 -14.66 -0.16 -7.04 16 13 C -0.03 -0.41 11.79 -17.81 -0.21 -0.62 16 14 C -0.01 -0.12 6.95 -81.60 -0.57 -0.69 16 15 C -0.08 -0.74 10.09 36.01 0.36 -0.38 16 16 C 0.10 1.05 6.35 -3.71 -0.02 1.03 16 17 C -0.15 -2.19 5.66 -26.61 -0.15 -2.34 16 18 C 0.18 3.13 2.20 -67.89 -0.15 2.98 16 19 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 20 N -0.72 -16.12 4.33 -53.38 -0.23 -16.35 16 21 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 25 Si 0.90 21.25 29.55 -169.99 -5.02 16.23 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.57 7.21 -51.93 -0.37 1.19 16 34 H 0.09 1.29 5.72 -51.93 -0.30 0.99 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.12 0.87 7.58 -51.92 -0.39 0.47 16 37 H 0.12 0.69 7.93 -51.93 -0.41 0.28 16 38 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.17 1.72 8.06 -52.48 -0.42 1.29 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.67 7.96 -51.92 -0.41 0.25 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.53 5.93 -51.93 -0.31 0.23 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.38 9.42 7.51 -40.82 -0.31 9.11 16 48 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -32.84 384.46 -9.68 -42.52 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.89 Total: 8.78 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.20 Total: -2.58 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.45 Total: -62.15 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.84 -9.68 -42.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037874865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.116 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds