Wall clock time and date at job start Tue Mar 31 2020 04:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 H 1.09007 * 109.49432 * 54.93283 * 3 2 1 5 5 C 1.52760 * 109.59240 * 294.98107 * 3 2 1 6 6 N 1.46925 * 109.00575 * 185.53609 * 5 3 2 7 7 C 1.34777 * 120.62614 * 233.57902 * 6 5 3 8 8 O 1.21283 * 120.00463 * 359.72727 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.44850 * 7 6 5 10 10 N 1.46499 * 109.47257 * 180.27849 * 9 7 6 11 11 C 1.35047 * 126.40012 * 265.02743 * 10 9 7 12 12 N 1.30494 * 108.70315 * 179.97438 * 11 10 9 13 13 C 1.34127 * 109.25590 * 359.97438 * 12 11 10 14 14 C 1.34668 * 108.02122 * 359.74063 * 13 12 11 15 15 C 1.50700 * 126.59134 * 180.28330 * 14 13 12 16 16 C 1.46927 * 118.74028 * 53.31181 * 6 5 3 17 17 C 1.53193 * 108.77386 * 306.63705 * 16 6 5 18 18 C 1.53043 * 109.49647 * 174.99405 * 3 2 1 19 19 H 1.09001 * 109.45653 * 61.33198 * 18 3 2 20 20 N 1.46495 * 109.45088 * 301.36498 * 18 3 2 21 21 C 1.36937 * 119.99465 * 154.93816 * 20 18 3 22 22 H 1.07993 * 120.00676 * 359.97438 * 21 20 18 23 23 C 1.38821 * 119.99540 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99990 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99795 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46775 * 90.00333 * 25 23 21 27 27 H 1.48500 * 109.47043 * 210.00383 * 25 23 21 28 28 H 1.48495 * 109.47448 * 330.00407 * 25 23 21 29 29 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46849 * 300.00516 * 1 2 3 31 31 H 1.09004 * 109.46580 * 59.99870 * 1 2 3 32 32 H 1.08997 * 109.46849 * 239.99484 * 2 1 3 33 33 H 1.09004 * 109.46580 * 120.00130 * 2 1 3 34 34 H 1.09000 * 109.50779 * 65.65007 * 5 3 2 35 35 H 1.09004 * 109.43086 * 305.37497 * 5 3 2 36 36 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 37 37 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 38 38 H 1.07997 * 125.64256 * 359.96119 * 11 10 9 39 39 H 1.08008 * 125.98944 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47052 * 270.15508 * 15 14 13 41 41 H 1.08997 * 109.47554 * 30.15787 * 15 14 13 42 42 H 1.09008 * 109.47163 * 150.15742 * 15 14 13 43 43 H 1.08997 * 109.58480 * 66.42812 * 16 6 5 44 44 H 1.08999 * 109.58556 * 186.85469 * 16 6 5 45 45 H 1.08996 * 109.49520 * 174.58628 * 17 16 6 46 46 H 1.09000 * 109.49888 * 294.65354 * 17 16 6 47 47 H 0.96993 * 120.00291 * 334.93782 * 20 18 3 48 48 H 0.97001 * 120.00002 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9822 0.8411 5 6 1.6379 2.1280 -1.3045 6 7 2.2453 3.4651 -1.3494 7 6 1.4858 4.5573 -1.5655 8 8 0.2898 4.4415 -1.7299 9 6 2.1219 5.9232 -1.5964 10 7 1.0918 6.9362 -1.8390 11 6 0.7500 7.4610 -3.0355 12 7 -0.2054 8.3310 -2.8533 13 6 -0.5052 8.3917 -1.5474 14 6 0.2909 7.5223 -0.8963 15 6 0.3008 7.2498 0.5858 16 6 3.6954 3.5893 -1.1485 17 6 4.0738 2.8880 0.1598 18 6 3.5654 1.4449 0.1259 19 1 4.0010 0.9264 -0.7282 20 7 3.9539 0.7613 1.3619 21 6 5.1915 0.1843 1.4652 22 1 5.8809 0.2328 0.6353 23 6 5.5599 -0.4630 2.6366 24 7 4.7195 -0.5226 3.6479 25 14 7.2479 -1.2507 2.7773 26 1 8.2136 -0.2590 3.3149 27 1 7.1749 -2.4174 3.6931 28 1 7.6969 -1.7020 1.4357 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.5525 2.2180 -1.3488 35 1 1.9923 1.5370 -2.1491 36 1 2.6068 6.1199 -0.6401 37 1 2.8634 5.9607 -2.3943 38 1 1.1941 7.2035 -3.9857 39 1 -1.2563 9.0241 -1.0973 40 1 1.0019 7.9261 1.0749 41 1 -0.6987 7.4075 0.9910 42 1 0.6065 6.2187 0.7637 43 1 4.2211 3.1200 -1.9801 44 1 3.9672 4.6433 -1.0899 45 1 5.1579 2.8892 0.2729 46 1 3.6198 3.4145 0.9994 47 1 3.3346 0.7174 2.1072 48 1 4.9768 -0.9752 4.4663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037874865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:24 Heat of formation + Delta-G solvation = 14.701717 kcal Electronic energy + Delta-G solvation = -27860.926810 eV Core-core repulsion = 24144.199966 eV Total energy + Delta-G solvation = -3716.726844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.10162 -41.29448 -39.19342 -36.24153 -35.46995 -34.89994 -33.45909 -32.84463 -31.08442 -30.57092 -28.67594 -27.32354 -26.45034 -25.13152 -24.40802 -22.42506 -22.25327 -21.72849 -20.93423 -20.06433 -19.05829 -18.57071 -18.01552 -16.92444 -16.80829 -16.62786 -16.01809 -15.59854 -15.56816 -15.33610 -14.95094 -14.74247 -14.73014 -14.52926 -14.41010 -14.03192 -13.93956 -13.66204 -13.59870 -13.28958 -13.20799 -13.12697 -13.03324 -12.83526 -12.67362 -12.54796 -12.17738 -12.04722 -11.85198 -11.59592 -11.54791 -11.38408 -11.09726 -10.93901 -10.84147 -10.40401 -9.73406 -9.21973 -8.94653 -7.90111 -5.17199 0.97742 1.41603 1.49579 1.50183 1.58042 1.66349 2.08606 2.23654 2.58771 3.30998 3.43863 3.71588 3.75019 3.80290 3.82364 3.89547 3.97844 4.04690 4.10582 4.23517 4.25482 4.34805 4.40070 4.46083 4.52918 4.61922 4.70942 4.74559 4.79518 4.82869 4.84874 4.88026 4.99226 5.01062 5.04204 5.15514 5.26061 5.36006 5.41655 5.45608 5.52563 5.58627 5.65285 5.81834 6.19488 6.31208 6.35171 6.99267 7.12554 7.38235 8.15004 8.37060 9.33392 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002986 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.837060 B = 9375.045354 C = 9918.258372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.092 4.092 4 H 0.050 0.950 5 C 0.127 3.873 6 N -0.599 5.599 7 C 0.497 3.503 8 O -0.574 6.574 9 C 0.086 3.914 10 N -0.444 5.444 11 C 0.183 3.817 12 N -0.531 5.531 13 C -0.057 4.057 14 C -0.019 4.019 15 C -0.074 4.074 16 C 0.110 3.890 17 C -0.145 4.145 18 C 0.177 3.823 19 H 0.048 0.952 20 N -0.732 5.732 21 C -0.227 4.227 22 H 0.079 0.921 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.965 3.035 26 H -0.289 1.289 27 H -0.303 1.303 28 H -0.269 1.269 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.167 0.833 38 H 0.233 0.767 39 H 0.177 0.823 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.370 0.630 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 13.443 -12.180 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.332 5.332 7 C 0.284 3.716 8 O -0.453 6.453 9 C -0.039 4.039 10 N -0.128 5.128 11 C -0.099 4.099 12 N -0.249 5.249 13 C -0.203 4.203 14 C -0.134 4.134 15 C -0.132 4.132 16 C -0.012 4.012 17 C -0.186 4.186 18 C 0.069 3.931 19 H 0.066 0.934 20 N -0.370 5.370 21 C -0.359 4.359 22 H 0.097 0.903 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.795 3.205 26 H -0.217 1.217 27 H -0.231 1.231 28 H -0.194 1.194 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.249 0.751 39 H 0.194 0.806 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.201 0.799 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.231 13.679 -12.927 19.291 hybrid contribution 0.887 -1.416 1.633 2.337 sum -3.343 12.263 -11.294 17.003 Atomic orbital electron populations 1.21776 0.95164 1.01830 1.01538 1.21360 0.95808 0.95480 1.01953 1.21537 0.96111 0.96230 0.97285 0.93127 1.21513 0.99060 0.82004 0.97003 1.48207 1.09279 1.06122 1.69558 1.21197 0.86823 0.87136 0.76396 1.90761 1.16528 1.86767 1.51246 1.22035 0.89786 0.82994 1.09119 1.45058 1.29204 1.30689 1.07823 1.25473 0.97497 0.95842 0.91043 1.70201 1.14976 1.21036 1.18694 1.22312 1.04101 1.04136 0.89796 1.21599 0.97545 1.00140 0.94099 1.20261 1.04600 1.01723 0.86648 1.22057 0.78056 1.03248 0.97822 1.22489 1.01627 0.97403 0.97046 1.20444 0.92051 0.91710 0.88901 0.93369 1.42596 1.15449 1.65030 1.13972 1.19583 0.92555 1.25537 0.98203 0.90292 1.25458 1.01374 1.03327 0.96702 1.69814 1.36989 1.50217 1.05197 0.85261 0.80438 0.77401 0.77402 1.21667 1.23058 1.19354 0.92216 0.93711 0.91953 0.91686 0.93478 0.90135 0.89967 0.84001 0.81570 0.75127 0.80586 0.88962 0.89319 0.92846 0.88851 0.86563 0.91082 0.93373 0.79873 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.67 71.98 0.70 -3.13 16 2 C -0.11 -3.30 5.31 30.59 0.16 -3.14 16 3 C -0.09 -2.70 1.91 -10.86 -0.02 -2.72 16 4 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 5 C 0.13 3.09 5.30 86.22 0.46 3.55 16 6 N -0.60 -12.24 2.98 -819.73 -2.44 -14.68 16 7 C 0.50 10.75 7.77 87.66 0.68 11.43 16 8 O -0.57 -18.01 15.84 -3.04 -0.05 -18.05 16 9 C 0.09 1.15 4.62 85.63 0.40 1.54 16 10 N -0.44 -8.77 2.24 -518.61 -1.16 -9.93 16 11 C 0.18 3.87 12.56 180.26 2.26 6.13 16 12 N -0.53 -14.31 11.25 -200.31 -2.25 -16.57 16 13 C -0.06 -1.42 11.79 83.52 0.98 -0.43 16 14 C -0.02 -0.43 6.95 40.95 0.28 -0.14 16 15 C -0.07 -1.28 10.09 71.24 0.72 -0.56 16 16 C 0.11 1.77 6.35 86.36 0.55 2.31 16 17 C -0.14 -3.82 5.66 30.67 0.17 -3.65 16 18 C 0.18 5.88 2.20 45.02 0.10 5.98 16 19 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 20 N -0.73 -33.16 4.33 -322.80 -1.40 -34.56 16 21 C -0.23 -11.49 9.93 84.04 0.83 -10.66 16 22 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 23 C -0.08 -4.16 5.50 84.86 0.47 -3.69 16 24 N -0.97 -57.30 13.06 21.65 0.28 -57.02 16 25 Si 0.96 44.00 29.55 68.60 2.03 46.03 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.48 6.70 -2.38 -0.02 1.46 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.81 7.21 -2.38 -0.02 1.79 16 34 H 0.08 2.19 5.72 -2.39 -0.01 2.18 16 35 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.14 1.35 7.58 -2.38 -0.02 1.33 16 37 H 0.17 0.81 7.93 -2.39 -0.02 0.79 16 38 H 0.23 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.03 7.96 -2.38 -0.02 1.01 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.12 0.97 5.93 -2.39 -0.01 0.95 16 45 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 46 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.37 18.79 7.51 -92.71 -0.70 18.10 16 48 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -74.48 384.46 4.01 -70.48 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.25 Total: 31.49 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 8.74 Total: 2.81 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -6.97 Total: -132.76 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.05 Total: -18.05 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -74.48 4.01 -70.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037874865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.181 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds