Wall clock time and date at job start Tue Mar 31 2020 04:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47264 * 2 1 4 4 C 1.34946 * 126.03807 * 125.02769 * 3 2 1 5 5 C 1.35316 * 107.74826 * 179.74950 * 4 3 2 6 6 C 1.39871 * 107.91765 * 0.39755 * 5 4 3 7 7 C 1.50698 * 125.89721 * 179.86501 * 6 5 4 8 8 C 1.50701 * 109.47294 * 124.71237 * 7 6 5 9 9 O 1.21279 * 119.99621 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99896 * 179.97438 * 8 7 6 11 11 C 1.46922 * 120.63423 * 354.21328 * 10 8 7 12 12 C 1.53192 * 108.77880 * 126.41272 * 11 10 8 13 13 C 1.53039 * 109.31268 * 54.63221 * 12 11 10 14 14 H 1.09001 * 109.45612 * 58.64612 * 13 12 11 15 15 N 1.46498 * 109.45942 * 178.61626 * 13 12 11 16 16 C 1.36937 * 120.00071 * 275.00386 * 15 13 12 17 17 H 1.08000 * 120.00003 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99931 * 180.02562 * 16 15 13 19 19 N 1.31612 * 119.99992 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99861 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47279 * 59.99465 * 20 18 16 22 22 H 1.48501 * 109.47402 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47226 * 299.99937 * 20 18 16 24 24 C 1.53041 * 109.54086 * 298.63612 * 13 12 11 25 25 C 1.46930 * 120.62983 * 174.23213 * 10 8 7 26 26 H 1.08997 * 109.58896 * 113.65484 * 25 10 8 27 27 C 1.53001 * 109.58396 * 353.37767 * 25 10 8 28 28 N 1.30838 * 108.20399 * 359.59746 * 6 5 4 29 29 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46866 * 299.99862 * 1 2 3 31 31 H 1.08993 * 109.46961 * 59.99620 * 1 2 3 32 32 H 1.09008 * 109.46687 * 240.00328 * 2 1 3 33 33 H 1.08999 * 109.47259 * 120.00671 * 2 1 3 34 34 H 1.08004 * 126.12497 * 0.02562 * 4 3 2 35 35 H 1.07997 * 126.04208 * 180.26630 * 5 4 3 36 36 H 1.09000 * 109.47042 * 4.70962 * 7 6 5 37 37 H 1.09008 * 109.46885 * 244.71141 * 7 6 5 38 38 H 1.09001 * 109.58830 * 6.62253 * 11 10 8 39 39 H 1.09004 * 109.58581 * 246.20082 * 11 10 8 40 40 H 1.09007 * 109.49650 * 294.68582 * 12 11 10 41 41 H 1.09001 * 109.52550 * 174.60418 * 12 11 10 42 42 H 0.97001 * 120.00205 * 95.00450 * 15 13 12 43 43 H 0.97000 * 120.00037 * 180.02562 * 19 18 16 44 44 H 1.08990 * 109.49846 * 181.31289 * 24 13 12 45 45 H 1.09000 * 109.49517 * 301.41543 * 24 13 12 46 46 H 1.08997 * 109.47590 * 65.79781 * 27 25 10 47 47 H 1.08999 * 109.46876 * 185.80273 * 27 25 10 48 48 H 1.09007 * 109.46828 * 305.79347 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8736 1.9209 0.8936 5 6 3.0764 3.2119 0.5426 6 6 2.3122 3.4725 -0.5995 7 6 2.2351 4.7885 -1.3298 8 6 2.5915 4.5803 -2.7792 9 8 2.8800 3.4725 -3.1795 10 7 2.5894 5.6252 -3.6304 11 6 2.1213 6.9470 -3.1920 12 6 3.2097 7.9814 -3.4956 13 6 3.5802 7.9058 -4.9786 14 1 2.6933 8.0917 -5.5843 15 7 4.5974 8.9162 -5.2796 16 6 4.2215 10.1997 -5.5737 17 1 3.1752 10.4670 -5.5841 18 6 5.1853 11.1570 -5.8594 19 7 6.4604 10.8311 -5.8472 20 14 4.6725 12.9077 -6.2613 21 1 3.9268 13.4812 -5.1124 22 1 5.8809 13.7288 -6.5273 23 1 3.8021 12.9047 -7.4645 24 6 4.1331 6.5149 -5.2978 25 6 3.0550 5.4640 -5.0146 26 1 2.2187 5.6016 -5.6999 27 6 3.6432 4.0635 -5.1981 28 7 1.6801 2.3749 -0.9276 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3200 1.4121 1.7352 35 1 3.7139 3.9171 1.0551 36 1 2.9344 5.4943 -0.8814 37 1 1.2223 5.1851 -1.2580 38 1 1.9241 6.9279 -2.1201 39 1 1.2091 7.2081 -3.7287 40 1 4.0908 7.7710 -2.8894 41 1 2.8385 8.9797 -3.2638 42 1 5.5372 8.6761 -5.2706 43 1 7.1339 11.5001 -6.0465 44 1 4.4185 6.4693 -6.3487 45 1 5.0055 6.3184 -4.6745 46 1 2.8540 3.3203 -5.0850 47 1 4.0806 3.9807 -6.1930 48 1 4.4143 3.8921 -4.4469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044605513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:16 Heat of formation + Delta-G solvation = 64.966555 kcal Electronic energy + Delta-G solvation = -27252.850125 eV Core-core repulsion = 23538.302927 eV Total energy + Delta-G solvation = -3714.547197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33106 -40.14655 -37.31046 -34.93543 -34.42336 -33.05894 -31.88104 -31.28412 -29.83725 -29.24378 -28.06331 -26.84867 -24.27879 -23.61108 -22.86032 -21.87649 -21.23955 -20.24344 -19.67634 -18.57426 -17.19329 -17.08400 -16.66817 -15.88380 -15.49177 -15.23599 -14.79976 -14.53901 -14.31583 -13.88924 -13.80058 -13.66697 -13.38454 -13.31959 -13.00135 -12.76459 -12.61271 -12.52999 -12.33883 -12.13373 -11.94464 -11.80084 -11.61093 -11.53562 -11.28156 -10.88390 -10.81012 -10.69680 -10.55329 -10.39567 -10.25344 -9.81851 -9.68808 -9.32185 -8.89607 -8.84474 -8.59782 -8.29004 -6.96800 -5.76611 -3.05719 1.83747 2.36857 2.65031 2.86707 3.26825 3.43411 3.48022 3.49050 4.18846 4.56577 4.58384 4.59529 4.67104 4.75900 4.86866 5.07116 5.15047 5.23478 5.24468 5.33659 5.36592 5.41587 5.44249 5.54027 5.59612 5.62504 5.68015 5.71694 5.78138 5.89414 5.93369 5.98615 6.08122 6.20422 6.31936 6.43321 6.50561 6.54857 6.56524 6.62747 6.81888 6.92725 6.96992 7.09673 7.66448 7.68726 7.70896 8.41715 8.44398 9.52740 10.10822 10.45499 11.45887 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.029004 B = 0.002414 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.148495 B =11597.337357 C =11925.382352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.375 5.375 4 C 0.046 3.954 5 C -0.265 4.265 6 C 0.085 3.915 7 C -0.062 4.062 8 C 0.518 3.482 9 O -0.524 6.524 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.151 4.151 13 C 0.179 3.821 14 H 0.047 0.953 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.134 4.134 25 C 0.149 3.851 26 H 0.068 0.932 27 C -0.134 4.134 28 N -0.260 5.260 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.170 0.830 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 -19.768 14.195 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.158 5.158 4 C -0.099 4.099 5 C -0.295 4.295 6 C -0.082 4.082 7 C -0.104 4.104 8 C 0.305 3.695 9 O -0.400 6.400 10 N -0.340 5.340 11 C -0.017 4.017 12 C -0.192 4.192 13 C 0.069 3.931 14 H 0.065 0.935 15 N -0.364 5.364 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.173 4.173 25 C 0.046 3.954 26 H 0.086 0.914 27 C -0.192 4.192 28 N -0.082 5.082 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.187 0.813 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.060 0.940 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.525 -20.905 13.105 27.232 hybrid contribution 0.788 1.495 0.541 1.774 sum -10.737 -19.411 13.646 26.043 Atomic orbital electron populations 1.22048 0.93895 1.02702 1.03607 1.21636 0.96013 0.77745 1.03547 1.48723 1.35883 1.10129 1.21067 1.22465 0.96077 0.94897 0.96449 1.21352 1.09384 0.96878 1.01868 1.21567 0.97133 0.94168 0.95337 1.20135 1.04603 0.93049 0.92581 1.20252 0.77690 0.84399 0.87199 1.90756 1.47832 1.24137 1.77276 1.48199 1.64201 1.09717 1.11923 1.21867 0.97878 0.82229 0.99696 1.22675 0.97597 0.97890 1.01077 1.20161 0.92947 0.87765 0.92266 0.93505 1.42431 1.04516 1.06366 1.83123 1.19187 0.92374 0.86171 1.39314 0.91229 1.24751 0.95281 0.98241 1.02708 1.69650 0.99042 1.33640 1.55749 0.86282 0.77009 0.84772 0.78189 1.21281 1.21750 1.21298 1.22290 0.97925 0.94977 1.02123 1.21254 0.96406 0.96337 0.81387 0.91360 1.22172 1.02078 0.95024 0.99890 1.77380 1.23331 0.96178 1.11307 0.90854 0.92202 0.90982 0.89862 0.88898 0.81261 0.83604 0.87057 0.87638 0.90417 0.91482 0.92139 0.90670 0.78275 0.93466 0.90768 0.91860 0.90696 0.94007 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.10 37.16 0.38 -0.73 16 2 C 0.13 0.95 7.23 -4.04 -0.03 0.92 16 3 N -0.37 -4.15 3.68 -61.36 -0.23 -4.38 16 4 C 0.05 0.45 11.45 -17.22 -0.20 0.25 16 5 C -0.27 -2.94 10.72 -40.01 -0.43 -3.37 16 6 C 0.09 1.12 6.02 -82.41 -0.50 0.63 16 7 C -0.06 -0.72 4.63 -29.04 -0.13 -0.85 16 8 C 0.52 7.61 7.49 -10.99 -0.08 7.52 16 9 O -0.52 -9.24 11.13 5.56 0.06 -9.18 16 10 N -0.61 -8.60 2.97 -165.22 -0.49 -9.09 16 11 C 0.11 1.35 6.35 -3.71 -0.02 1.33 16 12 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 13 C 0.18 3.42 2.73 -67.89 -0.19 3.23 16 14 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 15 N -0.72 -17.77 5.12 -53.39 -0.27 -18.04 16 16 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.13 -2.28 4.84 -26.61 -0.13 -2.41 16 25 C 0.15 2.26 3.49 -67.60 -0.24 2.02 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 C -0.13 -2.07 7.61 37.16 0.28 -1.78 16 28 N -0.26 -3.72 11.76 33.67 0.40 -3.33 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.09 0.38 8.07 -51.93 -0.42 -0.04 16 34 H 0.17 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.07 7.91 -51.93 -0.41 0.66 16 37 H 0.11 1.02 7.71 -51.92 -0.40 0.62 16 38 H 0.08 0.77 5.93 -51.93 -0.31 0.47 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.38 10.15 7.80 -40.82 -0.32 9.84 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 1.23 6.54 -51.93 -0.34 0.89 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.06 1.04 6.96 -51.93 -0.36 0.68 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -34.32 383.15 -8.76 -43.08 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.02 Total: 8.30 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.68 Total: -2.98 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.13 Total: -62.09 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.06 Total: -9.18 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.32 -8.76 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044605513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.047 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds