Wall clock time and date at job start Tue Mar 31 2020 04:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46713 * 2 1 4 4 H 1.08995 * 109.87766 * 55.81324 * 3 2 1 5 5 C 1.54330 * 109.88224 * 294.79202 * 3 2 1 6 6 H 1.08999 * 110.72024 * 336.78133 * 5 3 2 7 7 N 1.46496 * 110.71682 * 99.87196 * 5 3 2 8 8 C 1.34774 * 120.00202 * 202.55663 * 7 5 3 9 9 O 1.21292 * 119.99714 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00564 * 180.02562 * 8 7 5 11 11 C 1.50695 * 109.47168 * 180.02562 * 10 8 7 12 12 C 1.35314 * 126.04084 * 264.97138 * 11 10 8 13 13 N 1.34949 * 107.74715 * 180.02562 * 12 11 10 14 14 C 1.46498 * 126.03881 * 180.26568 * 13 12 11 15 15 N 1.40084 * 107.92374 * 0.02562 * 13 12 11 16 16 C 1.30835 * 108.20868 * 359.97438 * 15 13 12 17 17 C 1.50703 * 125.90015 * 180.02562 * 16 15 13 18 18 C 1.55153 * 103.10395 * 218.32700 * 5 3 2 19 19 C 1.55127 * 101.48345 * 35.28451 * 18 5 3 20 20 N 1.47029 * 110.00996 * 176.90980 * 3 2 1 21 21 C 1.36938 * 125.64906 * 298.39330 * 20 3 2 22 22 H 1.08002 * 119.99644 * 345.36533 * 21 20 3 23 23 C 1.38804 * 120.00233 * 165.36660 * 21 20 3 24 24 N 1.31620 * 119.99904 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00365 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46660 * 59.99797 * 25 23 21 27 27 H 1.48493 * 109.47283 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46945 * 300.00360 * 25 23 21 29 29 H 1.09005 * 109.46853 * 185.57775 * 1 2 3 30 30 H 1.09007 * 109.47190 * 305.57325 * 1 2 3 31 31 H 1.08998 * 109.47469 * 65.57465 * 1 2 3 32 32 H 1.08998 * 109.47117 * 239.99742 * 2 1 3 33 33 H 1.09002 * 109.46949 * 119.99520 * 2 1 3 34 34 H 0.97003 * 120.00163 * 22.56928 * 7 5 3 35 35 H 1.09001 * 109.47051 * 60.00296 * 10 8 7 36 36 H 1.09002 * 109.46710 * 300.00680 * 10 8 7 37 37 H 1.08001 * 126.12853 * 0.03285 * 12 11 10 38 38 H 1.09002 * 109.47341 * 269.71585 * 14 13 12 39 39 H 1.09003 * 109.47443 * 29.71431 * 14 13 12 40 40 H 1.08997 * 109.47420 * 149.71739 * 14 13 12 41 41 H 1.08997 * 109.47090 * 89.97926 * 17 16 15 42 42 H 1.09008 * 109.46718 * 209.97963 * 17 16 15 43 43 H 1.08993 * 109.47279 * 329.97517 * 17 16 15 44 44 H 1.08996 * 111.00357 * 153.48475 * 18 5 3 45 45 H 1.08995 * 111.00598 * 277.34148 * 18 5 3 46 46 H 1.09010 * 110.41568 * 204.29667 * 19 18 5 47 47 H 1.08990 * 110.30553 * 82.09109 * 19 18 5 48 48 H 0.97000 * 120.00437 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6204 1.9839 0.8479 5 6 1.6410 2.1402 -1.3175 6 1 1.4658 1.4068 -2.1046 7 7 0.4568 2.9800 -1.1214 8 6 -0.3195 3.3067 -2.1735 9 8 -0.0379 2.9050 -3.2828 10 6 -1.5373 4.1711 -1.9719 11 6 -2.2256 4.3858 -3.2952 12 6 -2.0516 5.4438 -4.1207 13 7 -2.8454 5.2609 -5.1966 14 6 -2.9653 6.1653 -6.3428 15 7 -3.5302 4.0508 -5.0264 16 6 -3.1579 3.5271 -3.8867 17 6 -3.6486 2.2237 -3.3109 18 6 2.8832 3.0104 -1.6448 19 6 4.0367 2.1043 -1.1401 20 7 3.5082 1.4571 0.0745 21 6 4.2603 0.9536 1.1021 22 1 3.7935 0.7152 2.0464 23 6 5.6225 0.7497 0.9302 24 7 6.1914 1.0407 -0.2204 25 14 6.6485 0.0635 2.3323 26 1 6.1309 -1.2746 2.7156 27 1 8.0628 -0.0595 1.8967 28 1 6.5672 0.9785 3.4991 29 1 -0.3633 -1.0229 0.0999 30 1 -0.3634 0.5979 0.8359 31 1 -0.3634 0.4249 -0.9357 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.2315 3.3012 -0.2342 35 1 -1.2354 5.1335 -1.5586 36 1 -2.2224 3.6783 -1.2820 37 1 -1.3950 6.2840 -3.9492 38 1 -3.7588 6.8884 -6.1537 39 1 -2.0222 6.6914 -6.4909 40 1 -3.2044 5.5893 -7.2367 41 1 -3.0054 1.4117 -3.6499 42 1 -3.6250 2.2757 -2.2223 43 1 -4.6703 2.0412 -3.6438 44 1 2.9635 3.1891 -2.7170 45 1 2.8573 3.9509 -1.0944 46 1 4.9141 2.7046 -0.8989 47 1 4.2855 1.3551 -1.8915 48 1 7.1434 0.8986 -0.3405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087604607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:41 Heat of formation + Delta-G solvation = 57.221790 kcal Electronic energy + Delta-G solvation = -27544.524485 eV Core-core repulsion = 23829.641449 eV Total energy + Delta-G solvation = -3714.883035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37268 -39.49273 -37.59989 -34.28357 -33.88932 -32.72297 -32.12554 -31.51785 -29.84933 -29.02080 -27.80082 -26.37223 -24.99988 -24.17247 -22.23618 -21.05014 -20.48167 -20.08287 -19.78238 -19.15636 -16.88512 -16.80012 -16.66487 -15.72055 -15.48428 -15.05527 -14.73104 -14.32427 -13.95312 -13.85426 -13.79833 -13.58807 -13.47491 -13.06699 -13.00643 -12.68772 -12.50525 -12.23727 -12.18440 -12.05598 -11.91111 -11.73243 -11.56897 -11.10746 -10.86860 -10.81555 -10.57119 -10.55812 -10.40605 -10.21605 -10.08875 -9.71224 -9.63382 -9.51280 -9.24469 -8.60145 -8.48621 -8.38783 -6.79020 -5.74159 -3.10541 1.80816 2.40916 2.63811 2.96202 3.39434 3.44098 3.45348 3.63387 4.32507 4.49273 4.66534 4.87360 4.89799 4.94786 5.13612 5.14496 5.16935 5.27357 5.38452 5.40173 5.51238 5.57100 5.57591 5.62801 5.79469 5.83079 5.84734 5.90873 5.94584 6.00235 6.09715 6.26783 6.37538 6.44750 6.50402 6.60965 6.63827 6.72328 6.80308 6.91942 6.99305 7.20884 7.52726 7.62935 7.66662 7.79830 7.87680 8.28006 8.58963 9.19313 9.80501 10.48801 11.37721 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.002730 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.850573 B =10254.621815 C =10925.882656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.140 3.860 6 H 0.091 0.909 7 N -0.718 5.718 8 C 0.510 3.490 9 O -0.535 6.535 10 C -0.061 4.061 11 C -0.214 4.214 12 C 0.067 3.933 13 N -0.379 5.379 14 C 0.105 3.895 15 N -0.302 5.302 16 C 0.092 3.908 17 C -0.073 4.073 18 C -0.156 4.156 19 C 0.174 3.826 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.074 0.926 23 C -0.003 4.003 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.396 0.604 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.171 0.829 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.027 0.973 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.084 9.876 -5.360 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.109 0.891 7 N -0.369 5.369 8 C 0.295 3.705 9 O -0.411 6.411 10 C -0.103 4.103 11 C -0.225 4.225 12 C -0.079 4.079 13 N -0.161 5.161 14 C -0.036 4.036 15 N -0.125 5.125 16 C -0.074 4.074 17 C -0.132 4.132 18 C -0.196 4.196 19 C 0.049 3.951 20 N -0.319 5.319 21 C -0.356 4.356 22 H 0.092 0.908 23 C -0.201 4.201 24 N -0.563 5.563 25 Si 0.740 3.260 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.188 0.812 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.045 0.955 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.366 9.519 -7.318 22.786 hybrid contribution 1.184 -0.032 1.731 2.097 sum -18.182 9.487 -5.587 21.256 Atomic orbital electron populations 1.21764 0.97220 1.00430 1.00950 1.22006 0.93628 0.99207 1.02297 1.21079 0.86976 0.93322 0.93326 0.94800 1.22042 0.83558 0.92420 0.98475 0.89133 1.46103 1.27605 1.52822 1.10375 1.20610 0.84089 0.81030 0.84734 1.90703 1.72323 1.53853 1.24215 1.19901 0.94805 1.00611 0.94937 1.19285 1.05801 0.97356 1.00088 1.22222 0.96698 1.00695 0.88306 1.48231 1.33602 1.17453 1.16777 1.21802 1.03119 0.91920 0.86805 1.77265 1.20420 0.95782 1.19024 1.22139 0.95982 0.97004 0.92287 1.20178 1.01301 0.91377 1.00347 1.23437 0.96974 0.98997 1.00163 1.21452 0.93071 0.92908 0.87649 1.44433 0.98467 1.68298 1.20655 1.18888 0.89878 1.36035 0.90826 0.90783 1.24909 0.97245 1.00956 0.96942 1.69921 1.10640 1.52831 1.22922 0.86240 0.79415 0.79074 0.81254 1.21095 1.21632 1.21144 0.93777 0.93449 0.93220 0.92470 0.91830 0.77004 0.88623 0.88440 0.81188 0.90980 0.89572 0.89443 0.90227 0.90605 0.91114 0.92070 0.92168 0.90935 0.95540 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.57 37.16 0.36 -1.75 16 2 C -0.13 -2.43 5.42 -26.73 -0.14 -2.57 16 3 C 0.16 3.15 2.93 -66.94 -0.20 2.95 16 4 H 0.03 0.64 7.70 -51.93 -0.40 0.24 16 5 C 0.14 2.49 1.97 -66.10 -0.13 2.36 16 6 H 0.09 1.79 7.26 -51.93 -0.38 1.42 16 7 N -0.72 -9.87 4.91 -52.03 -0.26 -10.13 16 8 C 0.51 7.17 7.82 -10.99 -0.09 7.09 16 9 O -0.53 -9.96 15.72 5.55 0.09 -9.87 16 10 C -0.06 -0.62 5.95 -29.04 -0.17 -0.79 16 11 C -0.21 -2.59 4.59 -105.05 -0.48 -3.08 16 12 C 0.07 0.74 11.40 -17.22 -0.20 0.54 16 13 N -0.38 -4.36 4.01 -68.16 -0.27 -4.63 16 14 C 0.11 0.71 11.47 59.85 0.69 1.40 16 15 N -0.30 -4.23 12.58 33.67 0.42 -3.80 16 16 C 0.09 1.21 7.22 -82.40 -0.59 0.62 16 17 C -0.07 -0.77 10.26 36.01 0.37 -0.40 16 18 C -0.16 -3.05 6.79 -24.47 -0.17 -3.21 16 19 C 0.17 4.21 5.42 -2.41 -0.01 4.20 16 20 N -0.59 -14.58 3.13 -162.43 -0.51 -15.09 16 21 C -0.23 -6.13 9.76 -15.06 -0.15 -6.28 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 24 N -0.92 -26.60 10.57 55.49 0.59 -26.01 16 25 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 32 H 0.06 1.14 8.07 -51.93 -0.42 0.73 16 33 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 34 H 0.40 4.41 8.34 -40.82 -0.34 4.07 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.77 7.41 -51.93 -0.38 0.39 16 37 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.64 7.37 -51.92 -0.38 0.26 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.07 1.94 6.93 -51.92 -0.36 1.58 16 47 H 0.03 0.70 8.06 -51.93 -0.42 0.29 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -34.80 389.90 -8.18 -42.98 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.07 Total: 3.09 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.01 Total: 0.88 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.03 Total: -59.66 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.80 -8.18 -42.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087604607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.199 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds