Wall clock time and date at job start Tue Mar 31 2020 04:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.38698 * 2 1 4 4 C 1.54384 * 110.34277 * 237.77034 * 2 1 3 5 5 N 1.48143 * 104.62065 * 264.99363 * 4 2 1 6 6 C 1.34769 * 127.84170 * 140.39360 * 5 4 2 7 7 O 1.21288 * 120.00282 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.99985 * 0.02562 * 6 5 4 9 9 C 1.52998 * 109.47263 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.47266 * 180.02562 * 9 8 6 11 11 C 1.34670 * 126.59194 * 85.02392 * 10 9 8 12 12 N 1.34123 * 108.02264 * 179.97438 * 11 10 9 13 13 C 1.30503 * 109.25528 * 0.02562 * 12 11 10 14 14 N 1.35038 * 108.69763 * 359.76547 * 13 12 11 15 15 C 1.46501 * 126.39531 * 180.26994 * 14 13 12 16 16 C 1.48151 * 104.32040 * 320.41512 * 5 4 2 17 17 C 1.54281 * 110.34573 * 122.23170 * 2 1 3 18 18 H 1.09005 * 110.34282 * 359.89328 * 17 2 1 19 19 C 1.53004 * 110.34432 * 237.74279 * 17 2 1 20 20 N 1.46499 * 109.47198 * 175.00023 * 19 17 2 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47201 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47080 * 120.00466 * 25 23 21 28 28 H 1.48506 * 109.47018 * 240.00565 * 25 23 21 29 29 H 1.09005 * 109.47092 * 297.76459 * 1 2 3 30 30 H 1.09001 * 109.47652 * 57.76963 * 1 2 3 31 31 H 1.09002 * 109.46992 * 177.77350 * 1 2 3 32 32 H 1.09008 * 110.40676 * 23.77802 * 4 2 1 33 33 H 1.09001 * 110.40797 * 146.20397 * 4 2 1 34 34 H 1.08998 * 109.47260 * 300.00375 * 8 6 5 35 35 H 1.08998 * 109.47196 * 60.00402 * 8 6 5 36 36 H 1.08998 * 109.47207 * 300.00308 * 9 8 6 37 37 H 1.09006 * 109.47108 * 59.99978 * 9 8 6 38 38 H 1.08000 * 125.98624 * 359.96442 * 11 10 9 39 39 H 1.08001 * 125.64834 * 180.02562 * 13 12 11 40 40 H 1.09004 * 109.47247 * 270.11758 * 15 14 13 41 41 H 1.08998 * 109.47402 * 30.11599 * 15 14 13 42 42 H 1.08999 * 109.47223 * 150.11859 * 15 14 13 43 43 H 1.08998 * 110.40618 * 280.80042 * 16 5 4 44 44 H 1.08998 * 110.40357 * 158.37108 * 16 5 4 45 45 H 1.09009 * 109.46730 * 54.99810 * 19 17 2 46 46 H 1.08998 * 109.46846 * 295.00355 * 19 17 2 47 47 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 48 48 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2245 5 7 2.3140 -2.1438 -0.7227 6 6 2.0771 -3.3104 -1.3545 7 8 2.3355 -4.3607 -0.8056 8 6 1.4912 -3.3101 -2.7429 9 6 1.3233 -4.7520 -3.2261 10 6 0.7380 -4.7517 -4.6147 11 6 1.4166 -4.6330 -5.7719 12 7 0.5316 -4.6801 -6.7786 13 6 -0.6698 -4.8228 -6.2892 14 7 -0.5850 -4.8767 -4.9426 15 6 -1.7010 -5.0371 -4.0071 16 6 2.8802 -1.9421 0.6313 17 6 2.0664 -0.7715 1.2236 18 1 1.2399 -1.1489 1.8258 19 6 2.9693 0.1307 2.0674 20 7 3.3711 -0.5806 3.2834 21 6 4.1816 0.0344 4.2001 22 1 4.5281 1.0421 4.0244 23 6 4.5577 -0.6374 5.3551 24 7 4.1357 -1.8657 5.5690 25 14 5.6638 0.2011 6.6052 26 1 5.9971 1.5688 6.1325 27 1 4.9602 0.2866 7.9101 28 1 6.9131 -0.5853 6.7669 29 1 -0.3633 0.4788 0.9094 30 1 -0.3634 0.5481 -0.8693 31 1 -0.3633 -1.0269 -0.0399 32 1 1.3222 -0.7869 -2.0206 33 1 2.9948 -0.3240 -1.5794 34 1 0.5191 -2.8171 -2.7270 35 1 2.1586 -2.7755 -3.4188 36 1 2.2952 -5.2453 -3.2419 37 1 0.6557 -5.2863 -2.5501 38 1 2.4860 -4.5197 -5.8717 39 1 -1.5804 -4.8911 -6.8659 40 1 -2.0860 -4.0560 -3.7291 41 1 -2.4926 -5.6168 -4.4818 42 1 -1.3548 -5.5578 -3.1143 43 1 3.9355 -1.6769 0.5664 44 1 2.7496 -2.8399 1.2354 45 1 2.4265 1.0363 2.3386 46 1 3.8561 0.3971 1.4924 47 1 3.0596 -1.4855 3.4414 48 1 4.3988 -2.3352 6.3760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106937036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:00 Heat of formation + Delta-G solvation = 31.119911 kcal Electronic energy + Delta-G solvation = -26719.366734 eV Core-core repulsion = 23003.351836 eV Total energy + Delta-G solvation = -3716.014898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.38166 -40.12453 -38.07011 -34.66129 -34.53931 -33.83220 -32.72055 -31.42254 -29.68510 -28.67258 -27.33680 -26.57877 -25.86268 -24.14534 -23.06046 -21.71795 -21.27824 -20.14849 -19.78372 -19.15429 -17.58948 -17.09823 -16.70914 -16.19776 -16.09161 -15.43683 -15.20214 -14.75063 -14.37365 -14.30344 -13.92607 -13.62289 -13.45885 -13.34947 -13.23678 -13.18764 -13.05579 -12.90254 -12.79563 -12.44105 -12.30522 -11.99364 -11.68769 -11.44796 -11.31843 -11.18680 -10.88122 -10.61512 -10.53945 -10.32640 -10.21300 -9.99214 -9.90825 -9.80464 -9.68324 -8.90057 -8.64063 -8.61288 -6.94075 -5.77154 -3.06575 1.70559 2.44751 2.63369 2.86830 3.02111 3.42900 3.48190 3.50748 4.19770 4.32209 4.42997 4.51497 4.57069 4.60541 4.65763 4.68413 4.76257 4.86010 4.91956 4.97566 5.13005 5.19503 5.31719 5.35749 5.41455 5.45954 5.52272 5.56404 5.57382 5.70550 5.75501 5.78330 5.96467 6.03677 6.07814 6.10949 6.15067 6.20876 6.37697 6.46567 6.49128 6.68745 6.81624 6.87275 7.61265 7.69218 7.79322 8.17045 8.41153 9.52447 10.09495 10.43691 11.45561 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.002233 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.422031 B =12534.828200 C =12927.493057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.104 3.896 5 N -0.622 5.622 6 C 0.530 3.470 7 O -0.542 6.542 8 C -0.128 4.128 9 C -0.028 4.028 10 C -0.021 4.021 11 C -0.025 4.025 12 N -0.494 5.494 13 C 0.176 3.824 14 N -0.459 5.459 15 C 0.068 3.932 16 C 0.115 3.885 17 C -0.103 4.103 18 H 0.082 0.918 19 C 0.163 3.837 20 N -0.733 5.733 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.169 0.831 39 H 0.204 0.796 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 -1.905 -22.700 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.108 0.892 4 C -0.019 4.019 5 N -0.356 5.356 6 C 0.319 3.681 7 O -0.419 6.419 8 C -0.168 4.168 9 C -0.067 4.067 10 C -0.135 4.135 11 C -0.173 4.173 12 N -0.212 5.212 13 C -0.106 4.106 14 N -0.142 5.142 15 C -0.074 4.074 16 C -0.007 4.007 17 C -0.123 4.123 18 H 0.100 0.900 19 C 0.035 3.965 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.186 0.814 39 H 0.220 0.780 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.039 -2.420 -23.124 26.657 hybrid contribution 0.176 0.196 1.688 1.709 sum -12.863 -2.224 -21.436 25.098 Atomic orbital electron populations 1.21826 0.94552 1.01576 1.01823 1.22122 0.96109 0.99810 0.94134 0.89233 1.22508 1.00594 0.81964 0.96842 1.49086 1.62884 1.05340 1.18270 1.20172 0.78297 0.82240 0.87388 1.90741 1.52965 1.30371 1.67830 1.21602 1.02565 0.98658 0.94002 1.19754 1.02268 0.95852 0.88821 1.21283 0.83418 1.10936 0.97904 1.22107 0.99595 1.08165 0.87393 1.70281 0.99262 1.19315 1.32337 1.24926 0.98763 1.06416 0.80508 1.45337 1.06998 1.53871 1.08023 1.22084 0.88136 1.03487 0.93721 1.22451 0.97492 0.99172 0.81605 1.22389 0.98871 0.95507 0.95499 0.89987 1.20727 0.94392 0.93431 0.87936 1.42387 1.59333 1.16494 1.19542 1.19251 1.21700 0.97859 0.98354 0.91123 1.24760 1.01184 0.96461 0.98602 1.69675 1.49322 1.11271 1.27730 0.86121 0.80156 0.78430 0.81491 1.20565 1.21893 1.21846 0.92024 0.92854 0.92933 0.90618 0.90801 0.89405 0.88499 0.88543 0.90405 0.81356 0.77976 0.90355 0.89311 0.89364 0.90458 0.89779 0.96002 0.96096 0.78228 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.90 37.16 0.33 -1.03 16 2 C -0.10 -1.13 3.31 -89.22 -0.30 -1.42 16 3 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 4 C 0.10 1.03 6.46 -2.41 -0.02 1.02 16 5 N -0.62 -8.13 3.32 -169.31 -0.56 -8.69 16 6 C 0.53 7.08 7.91 -10.99 -0.09 6.99 16 7 O -0.54 -9.47 16.25 5.55 0.09 -9.38 16 8 C -0.13 -1.16 4.66 -27.88 -0.13 -1.29 16 9 C -0.03 -0.26 4.84 -27.89 -0.13 -0.39 16 10 C -0.02 -0.19 6.21 -81.60 -0.51 -0.70 16 11 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 12 N -0.49 -5.63 11.25 -14.67 -0.17 -5.79 16 13 C 0.18 1.47 12.56 -90.38 -1.14 0.34 16 14 N -0.46 -3.55 3.15 -121.37 -0.38 -3.94 16 15 C 0.07 0.29 11.00 59.85 0.66 0.95 16 16 C 0.11 1.83 6.41 -2.41 -0.02 1.82 16 17 C -0.10 -1.56 2.75 -89.22 -0.24 -1.80 16 18 H 0.08 1.34 7.71 -51.93 -0.40 0.94 16 19 C 0.16 3.08 5.38 -4.04 -0.02 3.06 16 20 N -0.73 -18.18 5.48 -59.90 -0.33 -18.50 16 21 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 25 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.58 7.02 -51.92 -0.36 0.21 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.68 7.95 -51.93 -0.41 0.27 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.08 0.74 7.05 -51.93 -0.37 0.37 16 38 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.20 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 0.39 7.11 -51.93 -0.37 0.02 16 43 H 0.08 1.31 7.75 -51.93 -0.40 0.91 16 44 H 0.08 1.56 7.88 -51.93 -0.41 1.15 16 45 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 46 H 0.02 0.40 7.98 -51.93 -0.41 -0.01 16 47 H 0.38 10.13 7.61 -40.82 -0.31 9.82 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -35.50 392.32 -9.83 -45.33 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.04 Total: 5.51 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.05 Total: -0.24 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -0.71 Total: -64.49 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.50 -9.83 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106937036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.449 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds