Wall clock time and date at job start Tue Mar 31 2020 04:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.38698 * 2 1 4 4 C 1.54384 * 110.34277 * 237.77034 * 2 1 3 5 5 N 1.48143 * 104.62065 * 264.99363 * 4 2 1 6 6 C 1.34769 * 127.84170 * 140.39360 * 5 4 2 7 7 O 1.21288 * 120.00282 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.99985 * 0.02562 * 6 5 4 9 9 C 1.52998 * 109.47263 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.47266 * 180.02562 * 9 8 6 11 11 C 1.34670 * 126.59194 * 85.02392 * 10 9 8 12 12 N 1.34123 * 108.02264 * 179.97438 * 11 10 9 13 13 C 1.30503 * 109.25528 * 0.02562 * 12 11 10 14 14 N 1.35038 * 108.69763 * 359.76547 * 13 12 11 15 15 C 1.46501 * 126.39531 * 180.26994 * 14 13 12 16 16 C 1.48151 * 104.32040 * 320.41512 * 5 4 2 17 17 C 1.54281 * 110.34573 * 122.23170 * 2 1 3 18 18 H 1.09005 * 110.34282 * 359.89328 * 17 2 1 19 19 C 1.53004 * 110.34432 * 237.74279 * 17 2 1 20 20 N 1.46499 * 109.47198 * 175.00023 * 19 17 2 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47201 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47080 * 120.00466 * 25 23 21 28 28 H 1.48506 * 109.47018 * 240.00565 * 25 23 21 29 29 H 1.09005 * 109.47092 * 297.76459 * 1 2 3 30 30 H 1.09001 * 109.47652 * 57.76963 * 1 2 3 31 31 H 1.09002 * 109.46992 * 177.77350 * 1 2 3 32 32 H 1.09008 * 110.40676 * 23.77802 * 4 2 1 33 33 H 1.09001 * 110.40797 * 146.20397 * 4 2 1 34 34 H 1.08998 * 109.47260 * 300.00375 * 8 6 5 35 35 H 1.08998 * 109.47196 * 60.00402 * 8 6 5 36 36 H 1.08998 * 109.47207 * 300.00308 * 9 8 6 37 37 H 1.09006 * 109.47108 * 59.99978 * 9 8 6 38 38 H 1.08000 * 125.98624 * 359.96442 * 11 10 9 39 39 H 1.08001 * 125.64834 * 180.02562 * 13 12 11 40 40 H 1.09004 * 109.47247 * 270.11758 * 15 14 13 41 41 H 1.08998 * 109.47402 * 30.11599 * 15 14 13 42 42 H 1.08999 * 109.47223 * 150.11859 * 15 14 13 43 43 H 1.08998 * 110.40618 * 280.80042 * 16 5 4 44 44 H 1.08998 * 110.40357 * 158.37108 * 16 5 4 45 45 H 1.09009 * 109.46730 * 54.99810 * 19 17 2 46 46 H 1.08998 * 109.46846 * 295.00355 * 19 17 2 47 47 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 48 48 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2245 5 7 2.3140 -2.1438 -0.7227 6 6 2.0771 -3.3104 -1.3545 7 8 2.3355 -4.3607 -0.8056 8 6 1.4912 -3.3101 -2.7429 9 6 1.3233 -4.7520 -3.2261 10 6 0.7380 -4.7517 -4.6147 11 6 1.4166 -4.6330 -5.7719 12 7 0.5316 -4.6801 -6.7786 13 6 -0.6698 -4.8228 -6.2892 14 7 -0.5850 -4.8767 -4.9426 15 6 -1.7010 -5.0371 -4.0071 16 6 2.8802 -1.9421 0.6313 17 6 2.0664 -0.7715 1.2236 18 1 1.2399 -1.1489 1.8258 19 6 2.9693 0.1307 2.0674 20 7 3.3711 -0.5806 3.2834 21 6 4.1816 0.0344 4.2001 22 1 4.5281 1.0421 4.0244 23 6 4.5577 -0.6374 5.3551 24 7 4.1357 -1.8657 5.5690 25 14 5.6638 0.2011 6.6052 26 1 5.9971 1.5688 6.1325 27 1 4.9602 0.2866 7.9101 28 1 6.9131 -0.5853 6.7669 29 1 -0.3633 0.4788 0.9094 30 1 -0.3634 0.5481 -0.8693 31 1 -0.3633 -1.0269 -0.0399 32 1 1.3222 -0.7869 -2.0206 33 1 2.9948 -0.3240 -1.5794 34 1 0.5191 -2.8171 -2.7270 35 1 2.1586 -2.7755 -3.4188 36 1 2.2952 -5.2453 -3.2419 37 1 0.6557 -5.2863 -2.5501 38 1 2.4860 -4.5197 -5.8717 39 1 -1.5804 -4.8911 -6.8659 40 1 -2.0860 -4.0560 -3.7291 41 1 -2.4926 -5.6168 -4.4818 42 1 -1.3548 -5.5578 -3.1143 43 1 3.9355 -1.6769 0.5664 44 1 2.7496 -2.8399 1.2354 45 1 2.4265 1.0363 2.3386 46 1 3.8561 0.3971 1.4924 47 1 3.0596 -1.4855 3.4414 48 1 4.3988 -2.3352 6.3760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106937036.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:59 Heat of formation + Delta-G solvation = 9.071455 kcal Electronic energy + Delta-G solvation = -26720.322826 eV Core-core repulsion = 23003.351836 eV Total energy + Delta-G solvation = -3716.970991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.01469 -41.21097 -39.22009 -36.44042 -35.21874 -34.54181 -34.02132 -32.99992 -30.93811 -29.73725 -27.77569 -27.42167 -27.26505 -25.51010 -24.44886 -22.60512 -22.33835 -20.98966 -20.77383 -20.17923 -19.07319 -18.29412 -17.59705 -17.27845 -16.81484 -16.65206 -16.29461 -15.96189 -15.68855 -15.30532 -15.17334 -14.81720 -14.64560 -14.36696 -14.11770 -13.94228 -13.87904 -13.75080 -13.67194 -13.42033 -13.27426 -13.12940 -12.97232 -12.82852 -12.64418 -12.43383 -12.17792 -12.09030 -11.97946 -11.74273 -11.56662 -11.40691 -10.99883 -10.93880 -10.87049 -10.47756 -9.75356 -9.29658 -9.00646 -7.95612 -5.24843 1.06762 1.46645 1.47685 1.57760 1.59168 1.87204 2.01753 2.22499 2.55349 3.33957 3.38794 3.58830 3.67010 3.82832 3.89516 3.94266 3.96355 4.01903 4.11408 4.23987 4.26877 4.37934 4.42313 4.47371 4.49955 4.54231 4.60221 4.66870 4.69695 4.72673 4.81309 4.86136 4.92005 4.94381 5.03663 5.06450 5.09622 5.24789 5.29291 5.31030 5.46189 5.49590 5.54813 5.79622 6.26397 6.33094 6.59008 7.11378 7.14703 7.32275 8.08752 8.30181 9.28307 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.002233 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.422031 B =12534.828200 C =12927.493057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.105 0.895 4 C 0.105 3.895 5 N -0.621 5.621 6 C 0.525 3.475 7 O -0.593 6.593 8 C -0.111 4.111 9 C -0.020 4.020 10 C -0.023 4.023 11 C -0.045 4.045 12 N -0.537 5.537 13 C 0.181 3.819 14 N -0.458 5.458 15 C 0.062 3.938 16 C 0.118 3.882 17 C -0.093 4.093 18 H 0.065 0.935 19 C 0.162 3.838 20 N -0.748 5.748 21 C -0.241 4.241 22 H 0.080 0.920 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.974 3.026 26 H -0.262 1.262 27 H -0.294 1.294 28 H -0.296 1.296 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.172 0.828 39 H 0.238 0.762 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.030 0.970 46 H 0.028 0.972 47 H 0.371 0.629 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 0.201 -24.820 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.123 0.877 4 C -0.017 4.017 5 N -0.354 5.354 6 C 0.316 3.684 7 O -0.474 6.474 8 C -0.151 4.151 9 C -0.059 4.059 10 C -0.139 4.139 11 C -0.193 4.193 12 N -0.255 5.255 13 C -0.101 4.101 14 N -0.140 5.140 15 C -0.079 4.079 16 C -0.005 4.005 17 C -0.112 4.112 18 H 0.083 0.917 19 C 0.036 3.964 20 N -0.391 5.391 21 C -0.373 4.373 22 H 0.098 0.902 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.803 3.197 26 H -0.186 1.186 27 H -0.221 1.221 28 H -0.223 1.223 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.189 0.811 39 H 0.254 0.746 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.046 0.954 47 H 0.202 0.798 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.648 -0.245 -25.286 29.224 hybrid contribution 0.622 -0.459 2.293 2.420 sum -14.026 -0.704 -22.993 26.943 Atomic orbital electron populations 1.21802 0.93120 1.01591 1.02846 1.22135 0.97221 0.99969 0.92049 0.87710 1.22764 1.02396 0.79504 0.97025 1.49165 1.62248 1.06960 1.16978 1.21022 0.77398 0.81374 0.88612 1.90720 1.55087 1.32274 1.69306 1.21559 1.03727 0.98953 0.90863 1.19606 1.01511 0.95942 0.88874 1.21145 0.84273 1.11240 0.97199 1.22304 1.00083 1.09014 0.87875 1.70254 1.00632 1.21236 1.33386 1.25597 0.99070 1.04496 0.80926 1.45536 1.07127 1.52930 1.08421 1.22359 0.87600 1.04787 0.93204 1.22144 0.97194 0.97853 0.83302 1.22216 0.97378 0.95042 0.96607 0.91657 1.20915 0.95261 0.93856 0.86370 1.42653 1.59085 1.16276 1.21064 1.19698 1.20905 0.98073 0.98576 0.90218 1.25621 1.03412 0.97249 1.00975 1.69845 1.51308 1.12955 1.28226 0.85054 0.77807 0.78081 0.78710 1.18650 1.22134 1.22312 0.92960 0.89723 0.93610 0.86985 0.89390 0.86929 0.86576 0.89921 0.90944 0.81100 0.74610 0.88899 0.86874 0.89790 0.91845 0.93669 0.95202 0.95410 0.79752 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.90 71.98 0.64 -1.56 16 2 C -0.09 -1.82 3.31 -9.89 -0.03 -1.85 16 3 H 0.10 1.78 7.71 -2.39 -0.02 1.76 16 4 C 0.10 1.71 6.46 86.53 0.56 2.27 16 5 N -0.62 -15.66 3.32 -807.96 -2.68 -18.34 16 6 C 0.52 13.75 7.91 87.66 0.69 14.44 16 7 O -0.59 -21.56 16.25 -3.05 -0.05 -21.61 16 8 C -0.11 -1.76 4.66 29.85 0.14 -1.62 16 9 C -0.02 -0.35 4.84 29.85 0.14 -0.21 16 10 C -0.02 -0.40 6.21 40.95 0.25 -0.14 16 11 C -0.05 -0.91 11.79 83.52 0.98 0.07 16 12 N -0.54 -11.58 11.25 -200.31 -2.25 -13.83 16 13 C 0.18 2.61 12.56 180.26 2.26 4.87 16 14 N -0.46 -6.01 3.15 -537.89 -1.70 -7.70 16 15 C 0.06 0.35 11.00 127.77 1.41 1.75 16 16 C 0.12 3.92 6.41 86.53 0.55 4.47 16 17 C -0.09 -2.79 2.75 -9.89 -0.03 -2.82 16 18 H 0.06 2.20 7.71 -2.38 -0.02 2.18 16 19 C 0.16 6.09 5.38 86.38 0.46 6.55 16 20 N -0.75 -37.92 5.48 -343.44 -1.88 -39.80 16 21 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 22 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 24 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 25 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.10 7.02 -2.38 -0.02 1.08 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.28 7.95 -2.39 -0.02 1.27 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 37 H 0.07 1.34 7.05 -2.38 -0.02 1.33 16 38 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.24 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.08 0.58 7.11 -2.39 -0.02 0.56 16 43 H 0.06 2.24 7.75 -2.39 -0.02 2.23 16 44 H 0.04 1.82 7.88 -2.39 -0.02 1.80 16 45 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.03 1.03 7.98 -2.39 -0.02 1.01 16 47 H 0.37 20.49 7.61 -92.71 -0.71 19.78 16 48 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -80.69 392.32 3.34 -77.35 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.24 Total: 26.57 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 9.35 Total: 9.44 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -8.23 Total: -140.31 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -80.69 3.34 -77.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106937036.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.421 kcal (2) G-P(sol) polarization free energy of solvation -80.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds