Wall clock time and date at job start Tue Mar 31 2020 04:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.70076 * 2 1 4 4 C 1.53187 * 109.58840 * 120.35375 * 2 1 3 5 5 C 1.53038 * 109.31553 * 174.42474 * 4 2 1 6 6 C 1.53048 * 109.53632 * 298.63549 * 5 4 2 7 7 H 1.08994 * 109.49587 * 301.38236 * 6 5 4 8 8 N 1.46499 * 109.49551 * 181.31466 * 6 5 4 9 9 C 1.34776 * 120.00005 * 155.00112 * 8 6 5 10 10 O 1.21286 * 119.99619 * 0.02562 * 9 8 6 11 11 C 1.50692 * 120.00497 * 180.02562 * 9 8 6 12 12 C 1.52999 * 109.47571 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.39868 * 126.03748 * 269.68646 * 13 12 11 15 15 N 1.30843 * 108.20305 * 179.81970 * 14 13 12 16 16 N 1.40079 * 108.20202 * 0.43752 * 15 14 13 17 17 C 1.46510 * 126.03658 * 179.73901 * 16 15 14 18 18 C 1.34944 * 107.92733 * 359.72060 * 16 15 14 19 19 C 1.53193 * 109.30817 * 61.36561 * 6 5 4 20 20 N 1.46923 * 109.58614 * 239.64549 * 2 1 3 21 21 C 1.36935 * 120.63317 * 6.62959 * 20 2 1 22 22 H 1.07999 * 119.99588 * 330.15263 * 21 20 2 23 23 C 1.38807 * 120.00190 * 150.15869 * 21 20 2 24 24 N 1.31615 * 120.00095 * 344.48869 * 23 21 20 25 25 Si 1.86804 * 119.99905 * 164.48930 * 23 21 20 26 26 H 1.48502 * 109.47286 * 59.99794 * 25 23 21 27 27 H 1.48504 * 109.47087 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46956 * 299.99733 * 25 23 21 29 29 H 1.09004 * 109.46992 * 299.64651 * 1 2 3 30 30 H 1.08998 * 109.47111 * 59.64484 * 1 2 3 31 31 H 1.08996 * 109.47109 * 179.64476 * 1 2 3 32 32 H 1.09005 * 109.49819 * 54.47089 * 4 2 1 33 33 H 1.09001 * 109.50093 * 294.37734 * 4 2 1 34 34 H 1.09001 * 109.46092 * 178.61735 * 5 4 2 35 35 H 1.09001 * 109.45168 * 58.64531 * 5 4 2 36 36 H 0.96996 * 120.00297 * 334.99992 * 8 6 5 37 37 H 1.09007 * 109.46778 * 299.99985 * 11 9 8 38 38 H 1.08998 * 109.47445 * 59.99659 * 11 9 8 39 39 H 1.09007 * 109.46794 * 299.99652 * 12 11 9 40 40 H 1.08998 * 109.47279 * 59.99234 * 12 11 9 41 41 H 1.08004 * 125.90096 * 0.02562 * 14 13 12 42 42 H 1.08999 * 109.46871 * 269.97572 * 17 16 15 43 43 H 1.09000 * 109.46759 * 29.97622 * 17 16 15 44 44 H 1.09003 * 109.47058 * 149.97744 * 17 16 15 45 45 H 1.08003 * 126.12879 * 180.02562 * 18 16 15 46 46 H 1.09000 * 109.58787 * 65.15631 * 19 6 5 47 47 H 1.09005 * 109.57963 * 185.57589 * 19 6 5 48 48 H 0.97001 * 119.99933 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5675 -0.8479 1.1702 6 6 3.9570 -1.6656 -0.0635 7 1 3.4988 -2.6529 -0.0050 8 7 5.4143 -1.8052 -0.1175 9 6 5.9678 -2.8480 -0.7676 10 8 5.2593 -3.6706 -1.3084 11 6 7.4668 -2.9919 -0.8227 12 6 7.8297 -4.2495 -1.6150 13 6 9.3288 -4.3937 -1.6695 14 6 10.1705 -3.8700 -2.6562 15 7 11.4017 -4.1994 -2.3602 16 7 11.3812 -4.9527 -1.1793 17 6 12.5473 -5.5251 -0.5019 18 6 10.0978 -5.0576 -0.7758 19 6 3.4651 -0.9468 -1.3237 20 7 2.0225 -0.6995 -1.1945 21 6 1.1538 -1.1126 -2.1690 22 1 0.1397 -1.3796 -1.9105 23 6 1.5765 -1.1883 -3.4890 24 7 2.6872 -0.5875 -3.8598 25 14 0.5687 -2.1428 -4.7391 26 1 -0.7918 -1.5546 -4.8312 27 1 1.2297 -2.0703 -6.0670 28 1 0.4668 -3.5617 -4.3132 29 1 -0.3633 0.5084 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3633 -1.0276 -0.0064 32 1 1.6030 -1.7253 1.2913 33 1 1.7660 -0.1668 2.1368 34 1 3.9378 -1.3447 2.0669 35 1 4.0060 0.1475 1.0992 36 1 5.9809 -1.1471 0.3146 37 1 7.8980 -2.1181 -1.3114 38 1 7.8615 -3.0735 0.1900 39 1 7.3985 -5.1235 -1.1267 40 1 7.4351 -4.1675 -2.6277 41 1 9.8584 -3.2907 -3.5127 42 1 12.7337 -6.5285 -0.8848 43 1 13.4193 -4.8978 -0.6870 44 1 12.3565 -5.5750 0.5702 45 1 9.7473 -5.5779 0.1034 46 1 3.9904 0.0022 -1.4317 47 1 3.6519 -1.5716 -2.1971 48 1 2.9824 -0.6401 -4.7823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132509034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:08 Heat of formation + Delta-G solvation = 52.203437 kcal Electronic energy + Delta-G solvation = -27043.476633 eV Core-core repulsion = 23328.375985 eV Total energy + Delta-G solvation = -3715.100648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.32643 -39.39199 -37.59078 -34.53533 -34.14338 -32.75996 -32.65779 -30.75058 -29.84211 -29.36385 -27.13486 -25.89888 -24.95927 -23.65349 -22.19556 -21.23236 -20.70557 -20.12970 -19.77170 -19.11589 -17.11711 -16.44813 -16.34398 -15.64500 -15.52333 -15.22058 -14.82034 -14.52443 -13.92227 -13.80088 -13.70808 -13.36590 -13.34793 -13.19592 -12.99624 -12.72895 -12.58758 -12.35505 -12.21172 -11.85175 -11.72342 -11.39942 -11.08376 -11.04497 -10.84020 -10.64805 -10.54820 -10.45436 -10.35863 -10.22201 -9.92376 -9.68731 -9.57051 -9.39385 -9.24565 -8.46033 -8.42711 -8.35097 -6.54719 -5.68643 -3.13386 1.72612 2.35055 2.67103 3.17170 3.46398 3.52700 3.54840 3.70791 4.30692 4.58793 4.66739 4.81223 4.93876 5.03912 5.06732 5.18535 5.30752 5.39840 5.42114 5.47399 5.55611 5.60034 5.63106 5.71503 5.79459 5.82540 6.02237 6.15454 6.25654 6.31338 6.32757 6.36203 6.43397 6.49996 6.54713 6.57353 6.67128 6.80830 6.84345 7.05704 7.09109 7.17136 7.38927 7.54962 7.80106 7.91142 8.05276 8.56258 8.78813 9.30442 9.94625 10.50402 11.39514 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.015835 B = 0.002832 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.821365 B = 9884.384462 C =11203.265153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.080 0.920 8 N -0.724 5.724 9 C 0.507 3.493 10 O -0.535 6.535 11 C -0.132 4.132 12 C -0.026 4.026 13 C -0.228 4.228 14 C 0.055 3.945 15 N -0.302 5.302 16 N -0.382 5.382 17 C 0.103 3.897 18 C 0.052 3.948 19 C 0.169 3.831 20 N -0.584 5.584 21 C -0.254 4.254 22 H 0.069 0.931 23 C 0.007 3.993 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.391 0.609 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.184 0.816 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.172 0.828 46 H 0.016 0.984 47 H 0.093 0.907 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.714 -5.365 11.772 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.098 0.902 8 N -0.374 5.374 9 C 0.292 3.708 10 O -0.411 6.411 11 C -0.172 4.172 12 C -0.065 4.065 13 C -0.240 4.240 14 C -0.132 4.132 15 N -0.123 5.123 16 N -0.164 5.164 17 C -0.038 4.038 18 C -0.093 4.093 19 C 0.042 3.958 20 N -0.307 5.307 21 C -0.383 4.383 22 H 0.086 0.914 23 C -0.192 4.192 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.224 0.776 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.201 0.799 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.190 0.810 46 H 0.034 0.966 47 H 0.111 0.889 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.615 -5.944 10.928 20.756 hybrid contribution -0.868 -0.148 -0.166 0.896 sum 15.747 -6.092 10.762 20.023 Atomic orbital electron populations 1.21796 0.96039 1.01407 1.00112 1.20484 0.93030 0.93527 0.87126 0.95832 1.22047 0.94416 1.01271 0.98875 1.21676 0.97317 0.99620 0.96789 1.21943 0.78226 1.00693 0.98037 0.90171 1.46119 1.08418 1.26910 1.55993 1.20621 0.90436 0.81337 0.78368 1.90739 1.63734 1.42167 1.44487 1.21658 0.92717 1.00653 1.02209 1.19601 0.88227 0.96893 1.01734 1.20194 0.97095 1.08271 0.98419 1.23905 0.89765 0.99697 0.99791 1.77349 1.21824 1.13504 0.99616 1.48447 1.06036 1.41912 1.20050 1.21814 0.86593 0.98905 0.96518 1.22350 0.84221 1.01951 1.00798 1.21062 0.83470 0.96793 0.94431 1.44019 1.02684 1.64767 1.19232 1.19075 0.95052 1.38190 0.85996 0.91369 1.25080 0.97812 0.99278 0.97042 1.69992 1.24068 1.43590 1.16746 0.86408 0.79405 0.80466 0.80698 1.21004 1.21678 1.20916 0.94402 0.92034 0.92792 0.92122 0.92791 0.93220 0.92379 0.77619 0.89136 0.89710 0.90772 0.90102 0.79888 0.90929 0.89439 0.89595 0.81040 0.96625 0.88902 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.95 37.16 0.30 -2.28 16 2 C 0.16 3.41 3.50 -67.60 -0.24 3.17 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 5 C -0.12 -1.87 5.35 -26.69 -0.14 -2.02 16 6 C 0.12 2.26 2.61 -67.81 -0.18 2.09 16 7 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 8 N -0.72 -11.56 5.08 -53.69 -0.27 -11.83 16 9 C 0.51 8.50 7.80 -10.99 -0.09 8.41 16 10 O -0.53 -11.62 15.64 5.55 0.09 -11.53 16 11 C -0.13 -1.57 5.68 -27.89 -0.16 -1.73 16 12 C -0.03 -0.31 4.99 -27.89 -0.14 -0.45 16 13 C -0.23 -2.56 5.35 -105.06 -0.56 -3.12 16 14 C 0.05 0.64 11.96 -17.36 -0.21 0.43 16 15 N -0.30 -3.78 12.58 30.63 0.39 -3.39 16 16 N -0.38 -3.81 4.01 -68.16 -0.27 -4.08 16 17 C 0.10 0.56 11.47 59.85 0.69 1.25 16 18 C 0.05 0.50 11.40 -17.23 -0.20 0.30 16 19 C 0.17 4.12 4.86 -3.71 -0.02 4.10 16 20 N -0.58 -14.66 2.99 -164.78 -0.49 -15.15 16 21 C -0.25 -7.01 8.58 -15.06 -0.13 -7.14 16 22 H 0.07 1.83 6.23 -52.49 -0.33 1.51 16 23 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 24 N -0.90 -26.85 11.23 55.49 0.62 -26.23 16 25 Si 0.90 22.60 29.58 -169.99 -5.03 17.57 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 31 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.39 4.86 8.60 -40.82 -0.35 4.51 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 41 H 0.18 1.82 8.06 -52.48 -0.42 1.39 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.67 6.15 -51.93 -0.32 2.35 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -35.37 386.19 -8.52 -43.89 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.07 Total: 4.12 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.30 Total: 0.83 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.03 Total: -60.69 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.37 -8.52 -43.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132509034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.090 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds