Wall clock time and date at job start Tue Mar 31 2020 04:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.45713 * 2 1 4 4 C 1.53041 * 109.44835 * 119.96391 * 2 1 3 5 5 C 1.53187 * 109.31211 * 58.64990 * 4 2 1 6 6 N 1.46924 * 108.77642 * 54.63373 * 5 4 2 7 7 C 1.34787 * 120.63033 * 126.66473 * 6 5 4 8 8 O 1.21276 * 119.99928 * 179.72235 * 7 6 5 9 9 C 1.50703 * 119.99759 * 359.72119 * 7 6 5 10 10 C 1.50700 * 109.46694 * 180.02562 * 9 7 6 11 11 C 1.34668 * 126.59092 * 84.68878 * 10 9 7 12 12 N 1.34132 * 108.01550 * 179.87059 * 11 10 9 13 13 C 1.30492 * 109.25902 * 0.39943 * 12 11 10 14 14 N 1.35041 * 108.70213 * 359.75577 * 13 12 11 15 15 C 1.46496 * 126.40121 * 180.02562 * 14 13 12 16 16 C 1.46926 * 118.73991 * 306.38981 * 6 5 4 17 17 C 1.53038 * 109.45910 * 240.02387 * 2 1 3 18 18 H 1.08999 * 109.52370 * 181.38827 * 17 2 1 19 19 C 1.53008 * 109.49493 * 61.31335 * 17 2 1 20 20 N 1.46500 * 109.47020 * 175.15986 * 19 17 2 21 21 C 1.36933 * 120.00144 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99823 * 0.02562 * 21 20 19 23 23 C 1.38817 * 120.00175 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99796 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99912 * 180.02562 * 23 21 20 26 26 H 1.48488 * 109.47063 * 60.00455 * 25 23 21 27 27 H 1.48504 * 109.46653 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46997 * 300.00005 * 25 23 21 29 29 H 1.09006 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47619 * 299.97124 * 1 2 3 31 31 H 1.08996 * 109.47311 * 59.97504 * 1 2 3 32 32 H 1.08999 * 109.49559 * 178.60241 * 4 2 1 33 33 H 1.08998 * 109.49600 * 298.69633 * 4 2 1 34 34 H 1.09003 * 109.59079 * 294.84522 * 5 4 2 35 35 H 1.09002 * 109.58636 * 174.41916 * 5 4 2 36 36 H 1.08998 * 109.47136 * 299.99814 * 9 7 6 37 37 H 1.09001 * 109.47288 * 59.99840 * 9 7 6 38 38 H 1.07993 * 125.98983 * 0.02562 * 11 10 9 39 39 H 1.08001 * 125.65194 * 179.77553 * 13 12 11 40 40 H 1.08994 * 109.47178 * 269.99951 * 15 14 13 41 41 H 1.09003 * 109.46936 * 29.99770 * 15 14 13 42 42 H 1.08996 * 109.47456 * 149.99475 * 15 14 13 43 43 H 1.09002 * 109.58798 * 173.39259 * 16 6 5 44 44 H 1.08996 * 109.58781 * 293.67730 * 16 6 5 45 45 H 1.09001 * 109.46586 * 295.15525 * 19 17 2 46 46 H 1.08990 * 109.47467 * 55.15885 * 19 17 2 47 47 H 0.97007 * 119.99552 * 359.97438 * 20 19 17 48 48 H 0.96996 * 119.99475 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2502 5 6 1.4990 -2.1540 1.2644 6 7 1.8620 -2.8089 0.0002 7 6 2.5105 -3.9905 0.0004 8 8 2.8001 -4.5234 -1.0498 9 6 2.8756 -4.6494 1.3056 10 6 3.5884 -5.9483 1.0303 11 6 4.9028 -6.1060 0.7830 12 7 5.1353 -7.4133 0.5934 13 6 4.0137 -8.0707 0.7054 14 7 3.0233 -7.1940 0.9778 15 6 1.6086 -7.5159 1.1801 16 6 1.4993 -2.1542 -1.2641 17 6 2.0398 -0.7210 -1.2499 18 1 3.1295 -0.7432 -1.2387 19 6 1.5571 0.0193 -2.4990 20 7 2.1396 -0.6025 -3.6908 21 6 1.8479 -0.1070 -4.9335 22 1 1.1888 0.7425 -5.0351 23 6 2.4002 -0.6958 -6.0628 24 7 3.2039 -1.7308 -5.9389 25 14 2.0028 -0.0193 -7.7580 26 1 2.4414 1.3969 -7.8411 27 1 2.7122 -0.8191 -8.7888 28 1 0.5385 -0.0986 -7.9918 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8897 32 1 3.1293 -0.7430 1.2386 33 1 1.6955 -0.1933 2.1398 34 1 0.4141 -2.1344 1.3674 35 1 1.9375 -2.7017 2.0986 36 1 3.5303 -3.9897 1.8750 37 1 1.9699 -4.8460 1.8793 38 1 5.6406 -5.3182 0.7465 39 1 3.8968 -9.1390 0.5984 40 1 1.0867 -7.4763 0.2241 41 1 1.5204 -8.5176 1.6009 42 1 1.1660 -6.7935 1.8659 43 1 1.9380 -2.7019 -2.0982 44 1 0.4145 -2.1369 -1.3686 45 1 0.4699 -0.0344 -2.5557 46 1 1.8671 1.0628 -2.4454 47 1 2.7319 -1.3653 -3.5995 48 1 3.5895 -2.1425 -6.7281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133240870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:46 Heat of formation + Delta-G solvation = 38.212746 kcal Electronic energy + Delta-G solvation = -27795.249849 eV Core-core repulsion = 24079.542519 eV Total energy + Delta-G solvation = -3715.707329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.15435 -40.27854 -38.05391 -34.94677 -34.14711 -33.52869 -32.37121 -31.74650 -29.82808 -27.94881 -27.24467 -27.05305 -25.25135 -24.56180 -23.13930 -21.49879 -21.20825 -20.68764 -19.36965 -18.15568 -17.37517 -17.11933 -16.85662 -15.86447 -15.56091 -15.53581 -14.94914 -14.90420 -14.57894 -14.22491 -13.89273 -13.56947 -13.49971 -13.39234 -13.09741 -13.02959 -12.95612 -12.80022 -12.66024 -12.44160 -12.16791 -11.93089 -11.65348 -11.23360 -11.08117 -10.89463 -10.76781 -10.62094 -10.29542 -10.17461 -9.98316 -9.95301 -9.74613 -9.58833 -9.51690 -8.81191 -8.44409 -8.35983 -6.85379 -5.67977 -2.98070 1.91473 2.64703 2.74251 3.04024 3.27392 3.48344 3.52180 3.54283 4.37470 4.45828 4.52596 4.63307 4.66609 4.68633 4.75520 4.81753 4.87092 4.92447 5.09530 5.17327 5.17590 5.24156 5.27787 5.40291 5.55108 5.61972 5.65688 5.68817 5.72584 5.80775 5.88954 5.94839 6.01029 6.17033 6.25452 6.32009 6.34167 6.37023 6.59163 6.65161 6.72253 6.79666 6.91036 7.12233 7.50564 7.74958 8.05789 8.30879 8.49528 9.60297 10.18572 10.52540 11.54127 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.003565 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.072856 B = 7851.606832 C = 9668.539158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.129 4.129 5 C 0.105 3.895 6 N -0.612 5.612 7 C 0.507 3.493 8 O -0.516 6.516 9 C -0.061 4.061 10 C -0.009 4.009 11 C -0.006 4.006 12 N -0.493 5.493 13 C 0.181 3.819 14 N -0.456 5.456 15 C 0.071 3.929 16 C 0.121 3.879 17 C -0.102 4.102 18 H 0.074 0.926 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.244 4.244 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.167 0.833 39 H 0.204 0.796 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.022 0.978 46 H 0.020 0.980 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 -6.228 24.022 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.168 4.168 5 C -0.018 4.018 6 N -0.346 5.346 7 C 0.294 3.706 8 O -0.390 6.390 9 C -0.103 4.103 10 C -0.123 4.123 11 C -0.154 4.154 12 N -0.211 5.211 13 C -0.101 4.101 14 N -0.139 5.139 15 C -0.071 4.071 16 C -0.001 4.001 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.375 4.375 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.184 0.816 39 H 0.220 0.780 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.462 -6.838 23.152 24.751 hybrid contribution -0.905 0.543 -0.804 1.327 sum -6.366 -6.295 22.348 24.075 Atomic orbital electron populations 1.21985 0.95284 1.01901 1.01788 1.21069 0.95958 0.99421 0.93940 0.90827 1.21944 1.01269 0.95041 0.98501 1.21771 1.00315 0.93900 0.85825 1.48179 1.57866 1.20864 1.07702 1.20447 0.78090 0.81057 0.91049 1.90816 1.52240 1.62893 1.33092 1.20052 1.01213 0.92300 0.96688 1.20418 0.94288 0.85801 1.11835 1.21988 0.93796 0.93886 1.05740 1.70260 1.26035 1.04999 1.19768 1.24863 0.82680 0.97387 1.05159 1.45176 1.08953 1.07011 1.52778 1.22022 0.78988 1.02797 1.03327 1.21720 0.99714 0.92962 0.85658 1.21680 1.00906 0.94408 0.95132 0.90803 1.20675 0.95920 0.94710 0.85424 1.42416 1.57029 1.37555 1.00777 1.19146 1.23538 1.11009 0.83813 0.91331 1.24758 0.99995 0.98273 0.97788 1.69669 1.35364 1.24004 1.28651 0.86293 0.77602 0.78010 0.84413 1.21317 1.21691 1.21327 0.92514 0.93176 0.91791 0.91381 0.90873 0.91149 0.90315 0.86777 0.88729 0.81571 0.77979 0.90305 0.89366 0.89983 0.88020 0.91561 0.96043 0.96229 0.78101 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.11 37.16 0.30 -1.32 16 2 C -0.08 -0.99 2.71 -90.58 -0.25 -1.23 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.16 5.62 -26.61 -0.15 -1.31 16 5 C 0.11 0.90 5.87 -3.71 -0.02 0.88 16 6 N -0.61 -7.96 2.97 -172.77 -0.51 -8.48 16 7 C 0.51 7.36 7.69 -10.98 -0.08 7.27 16 8 O -0.52 -10.46 15.45 5.56 0.09 -10.37 16 9 C -0.06 -0.61 4.38 -29.03 -0.13 -0.74 16 10 C -0.01 -0.11 5.45 -81.60 -0.44 -0.56 16 11 C -0.01 -0.08 11.79 -17.81 -0.21 -0.29 16 12 N -0.49 -7.51 11.25 -14.67 -0.17 -7.67 16 13 C 0.18 2.15 12.56 -90.38 -1.14 1.02 16 14 N -0.46 -5.03 3.15 -121.37 -0.38 -5.41 16 15 C 0.07 0.47 11.00 59.84 0.66 1.13 16 16 C 0.12 1.99 5.04 -3.71 -0.02 1.97 16 17 C -0.10 -1.63 2.15 -90.50 -0.19 -1.82 16 18 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 19 C 0.16 3.21 5.19 -4.04 -0.02 3.19 16 20 N -0.73 -19.07 5.38 -59.91 -0.32 -19.39 16 21 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -29.37 13.06 55.49 0.72 -28.65 16 25 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H 0.06 0.60 4.98 -51.93 -0.26 0.34 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 35 H 0.08 0.46 5.94 -51.93 -0.31 0.16 16 36 H 0.11 0.87 7.70 -51.93 -0.40 0.47 16 37 H 0.09 0.65 6.89 -51.93 -0.36 0.29 16 38 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.41 7.12 -51.93 -0.37 0.04 16 43 H 0.10 2.17 6.21 -51.93 -0.32 1.85 16 44 H 0.07 1.06 6.70 -51.93 -0.35 0.71 16 45 H 0.02 0.43 6.72 -51.93 -0.35 0.08 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.38 10.79 6.89 -40.82 -0.28 10.51 16 48 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -38.20 375.01 -9.34 -47.54 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.46 Total: 8.18 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.94 Total: 0.60 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.66 Total: -69.60 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.20 -9.34 -47.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133240870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.753 kcal (2) G-P(sol) polarization free energy of solvation -38.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds