Wall clock time and date at job start Tue Mar 31 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47155 * 2 1 4 4 C 1.52998 * 109.47132 * 239.99592 * 2 1 3 5 5 C 1.53005 * 109.47165 * 65.82514 * 4 2 1 6 6 H 1.09004 * 109.47228 * 304.80721 * 5 4 2 7 7 C 1.52994 * 109.47272 * 184.80783 * 5 4 2 8 8 N 1.46494 * 109.47024 * 64.80411 * 5 4 2 9 9 C 1.36939 * 120.00182 * 205.74375 * 8 5 4 10 10 H 1.08002 * 119.99785 * 5.14439 * 9 8 5 11 11 C 1.38813 * 120.00066 * 184.86601 * 9 8 5 12 12 N 1.31621 * 120.00023 * 355.05299 * 11 9 8 13 13 Si 1.86796 * 119.99974 * 175.04814 * 11 9 8 14 14 H 1.48495 * 109.47111 * 90.00334 * 13 11 9 15 15 H 1.48498 * 109.47052 * 210.00273 * 13 11 9 16 16 H 1.48504 * 109.47293 * 330.00220 * 13 11 9 17 17 N 1.46495 * 109.46907 * 119.99865 * 2 1 3 18 18 C 1.34783 * 120.00037 * 275.25491 * 17 2 1 19 19 O 1.21629 * 119.99929 * 4.64364 * 18 17 2 20 20 C 1.47157 * 119.99926 * 184.64793 * 18 17 2 21 21 C 1.38102 * 126.94101 * 98.63745 * 20 18 17 22 22 C 1.39532 * 105.70430 * 179.97438 * 21 20 18 23 23 N 1.31058 * 107.60211 * 0.02562 * 22 21 20 24 24 N 1.28443 * 110.96903 * 359.71861 * 23 22 21 25 25 C 1.46506 * 125.19899 * 180.30088 * 24 23 22 26 26 C 1.51280 * 109.36790 * 180.02562 * 22 21 20 27 27 C 1.54369 * 105.27598 * 342.87630 * 26 22 21 28 28 C 1.50844 * 144.40817 * 359.94703 * 21 20 18 29 29 H 1.08996 * 109.46563 * 300.00479 * 1 2 3 30 30 H 1.09001 * 109.47036 * 60.00366 * 1 2 3 31 31 H 1.08996 * 109.47404 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47116 * 305.82754 * 4 2 1 33 33 H 1.08996 * 109.47281 * 185.82558 * 4 2 1 34 34 H 1.09003 * 109.46960 * 180.02562 * 7 5 4 35 35 H 1.09004 * 109.46943 * 300.00112 * 7 5 4 36 36 H 1.08997 * 109.47183 * 59.99903 * 7 5 4 37 37 H 0.97000 * 120.00197 * 25.74582 * 8 5 4 38 38 H 0.97002 * 120.00174 * 179.97438 * 12 11 9 39 39 H 0.97001 * 120.00471 * 95.25516 * 17 2 1 40 40 H 1.09004 * 109.46863 * 274.75891 * 25 24 23 41 41 H 1.08995 * 109.46723 * 34.75933 * 25 24 23 42 42 H 1.09002 * 109.46940 * 154.75976 * 25 24 23 43 43 H 1.08992 * 110.28353 * 223.92011 * 26 22 21 44 44 H 1.09007 * 110.27854 * 101.82518 * 26 22 21 45 45 H 1.09006 * 110.78302 * 268.03088 * 27 26 22 46 46 H 1.09004 * 110.94509 * 144.67523 * 27 26 22 47 47 H 1.09003 * 110.30413 * 316.00596 * 28 21 20 48 48 H 1.09003 * 110.30969 * 78.16086 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6531 0.0794 -2.4942 6 1 0.5756 0.2439 -2.5001 7 6 2.0569 -0.6997 -3.7475 8 7 2.3441 1.3710 -2.4783 9 6 1.8073 2.4430 -3.1403 10 1 0.8354 2.3599 -3.6037 11 6 2.5100 3.6381 -3.2106 12 7 3.6462 3.7727 -2.5601 13 14 1.8430 5.0551 -4.2287 14 1 0.9699 5.9058 -3.3807 15 1 2.9730 5.8673 -4.7468 16 1 1.0557 4.5187 -5.3679 17 7 2.0183 -0.6906 1.1962 18 6 2.1422 -0.0194 2.3584 19 8 1.7696 1.1358 2.4363 20 6 2.7282 -0.6843 3.5332 21 6 4.0300 -0.5805 3.9822 22 6 4.1031 -1.3869 5.1185 23 7 2.9191 -1.9170 5.3051 24 7 2.0927 -1.5250 4.4033 25 6 0.6847 -1.9210 4.3186 26 6 5.5057 -1.3329 5.6827 27 6 6.3814 -0.7706 4.5426 28 6 5.3714 0.0571 3.7184 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.5940 -1.7145 -1.3028 33 1 3.1250 -0.8126 -1.1986 34 1 1.7816 -0.1290 -4.6345 35 1 3.1344 -0.8641 -3.7417 36 1 1.5427 -1.6607 -3.7593 37 1 3.1819 1.4671 -1.9990 38 1 4.1374 4.6077 -2.6096 39 1 2.2526 -1.6308 1.1518 40 1 0.6048 -2.8663 3.7819 41 1 0.2793 -2.0383 5.3236 42 1 0.1226 -1.1528 3.7874 43 1 5.8407 -2.3327 5.9586 44 1 5.5398 -0.6701 6.5475 45 1 6.8002 -1.5783 3.9422 46 1 7.1730 -0.1336 4.9372 47 1 5.6141 0.0023 2.6571 48 1 5.3699 1.0943 4.0538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135916052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:27 Heat of formation + Delta-G solvation = 51.886049 kcal Electronic energy + Delta-G solvation = -27472.784888 eV Core-core repulsion = 23757.670477 eV Total energy + Delta-G solvation = -3715.114411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.77062 -39.49604 -37.09401 -36.94469 -34.60738 -32.52979 -32.23349 -31.22390 -29.96943 -28.56008 -27.59331 -26.61090 -26.35406 -23.91409 -23.36398 -21.79615 -20.88188 -20.40681 -19.90971 -19.19145 -17.60249 -17.12741 -16.72883 -15.90694 -15.82955 -15.18705 -14.96405 -14.68749 -14.37167 -14.10827 -13.86846 -13.55500 -13.13024 -13.10160 -12.94768 -12.90812 -12.68991 -12.67805 -12.13222 -11.99105 -11.94696 -11.81090 -11.31508 -11.30474 -11.14720 -11.04376 -10.82275 -10.65715 -10.47801 -10.45633 -10.26141 -10.10489 -9.77979 -9.61744 -9.09189 -8.96995 -8.85734 -8.64858 -6.93264 -5.73321 -3.01793 1.58617 2.04521 2.49621 2.69139 3.24559 3.46247 3.51357 3.52884 3.74897 4.52458 4.62236 4.63778 4.71069 4.79356 4.88815 5.00334 5.08109 5.13944 5.16301 5.30712 5.49185 5.54462 5.61042 5.62505 5.67954 5.71592 5.77944 5.79670 5.85390 5.96329 5.99481 6.04642 6.07624 6.15367 6.27212 6.39846 6.41046 6.41563 6.50646 6.67686 6.67998 6.75110 6.89789 7.06955 7.51796 7.73704 7.96706 8.19423 8.45096 9.56355 10.13192 10.47743 11.49115 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.003162 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.753336 B = 8851.959066 C = 9598.237757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.109 0.891 4 C -0.129 4.129 5 C 0.174 3.826 6 H 0.052 0.948 7 C -0.164 4.164 8 N -0.723 5.723 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.010 4.010 12 N -0.929 5.929 13 Si 0.902 3.098 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.283 1.283 17 N -0.711 5.711 18 C 0.588 3.412 19 O -0.511 6.511 20 C -0.008 4.008 21 C -0.178 4.178 22 C 0.005 3.995 23 N -0.270 5.270 24 N -0.277 5.277 25 C 0.091 3.909 26 C -0.024 4.024 27 C -0.115 4.115 28 C -0.047 4.047 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.396 0.604 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 -16.072 14.243 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.127 0.873 4 C -0.168 4.168 5 C 0.064 3.936 6 H 0.070 0.930 7 C -0.225 4.225 8 N -0.365 5.365 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.207 4.207 12 N -0.577 5.577 13 Si 0.734 3.266 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.209 1.209 17 N -0.362 5.362 18 C 0.370 3.630 19 O -0.384 6.384 20 C -0.136 4.136 21 C -0.189 4.189 22 C -0.154 4.154 23 N -0.101 5.101 24 N -0.066 5.066 25 C -0.049 4.049 26 C -0.064 4.064 27 C -0.153 4.153 28 C -0.085 4.085 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.229 0.771 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.422 -15.835 14.862 21.763 hybrid contribution 0.289 0.863 -1.009 1.359 sum -1.133 -14.972 13.853 20.429 Atomic orbital electron populations 1.22155 0.95420 1.01003 1.03033 1.21175 0.94048 0.98930 0.81989 0.87345 1.22136 1.01334 0.98557 0.94759 1.20227 0.96440 0.86479 0.90474 0.92986 1.22437 1.00640 0.98463 1.00910 1.42444 1.26625 1.04889 1.62507 1.19182 1.00655 0.90340 1.26913 0.91285 1.24727 0.97129 0.98043 1.00761 1.69668 1.16423 1.26064 1.45563 0.86264 0.77597 0.82714 0.80069 1.21755 1.21810 1.20851 1.46206 1.66414 1.13774 1.09794 1.17015 0.78222 0.85872 0.81869 1.90902 1.47093 1.16511 1.83880 1.20634 0.93411 1.02034 0.97494 1.21139 0.94144 1.04230 0.99367 1.22741 0.94611 0.99694 0.98403 1.72615 1.00486 1.22747 1.14223 1.45670 1.09975 1.32795 1.18114 1.22145 0.75119 1.02333 1.05290 1.20403 0.85704 1.02093 0.98151 1.22379 0.97129 0.99624 0.96147 1.20404 0.87983 0.98937 1.01198 0.92740 0.90452 0.93356 0.92010 0.91540 0.92672 0.93574 0.94663 0.78325 0.93547 0.77055 0.89607 0.88392 0.88742 0.90383 0.89783 0.90635 0.89778 0.90458 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.26 37.16 0.34 -1.96 16 2 C 0.14 2.25 2.56 -67.93 -0.17 2.08 16 3 H 0.11 2.28 7.11 -51.93 -0.37 1.91 16 4 C -0.13 -1.93 4.40 -26.73 -0.12 -2.05 16 5 C 0.17 3.23 2.77 -67.93 -0.19 3.04 16 6 H 0.05 0.97 6.32 -51.93 -0.33 0.65 16 7 C -0.16 -2.83 9.50 37.15 0.35 -2.48 16 8 N -0.72 -17.42 4.46 -53.43 -0.24 -17.66 16 9 C -0.24 -6.52 9.92 -15.06 -0.15 -6.67 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 12 N -0.93 -28.10 13.07 55.49 0.73 -27.38 16 13 Si 0.90 22.48 29.56 -169.99 -5.02 17.46 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 N -0.71 -9.69 5.07 -54.97 -0.28 -9.97 16 18 C 0.59 9.44 6.97 -12.64 -0.09 9.36 16 19 O -0.51 -10.49 16.77 5.25 0.09 -10.40 16 20 C -0.01 -0.12 6.71 -82.14 -0.55 -0.67 16 21 C -0.18 -2.50 7.02 -104.12 -0.73 -3.23 16 22 C 0.00 0.06 8.13 -82.16 -0.67 -0.61 16 23 N -0.27 -3.69 11.91 33.78 0.40 -3.29 16 24 N -0.28 -3.53 3.75 -63.94 -0.24 -3.77 16 25 C 0.09 0.76 11.21 59.85 0.67 1.44 16 26 C -0.02 -0.22 6.76 -26.88 -0.18 -0.40 16 27 C -0.11 -0.95 7.07 -25.27 -0.18 -1.13 16 28 C -0.05 -0.55 6.76 -27.07 -0.18 -0.73 16 29 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.08 1.22 6.49 -51.93 -0.34 0.88 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.38 9.99 7.82 -40.82 -0.32 9.67 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.40 4.28 8.59 -40.82 -0.35 3.93 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -34.52 392.65 -8.57 -43.09 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -7.99 Total: 10.40 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.94 Total: -4.40 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.37 Total: -62.06 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.52 -8.57 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135916052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.975 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds