Wall clock time and date at job start Tue Mar 31 2020 04:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47249 * 269.99908 * 3 2 1 5 5 H 1.48501 * 109.47220 * 29.99999 * 3 2 1 6 6 H 1.48500 * 109.47099 * 150.00247 * 3 2 1 7 7 C 1.37873 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00170 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47250 * 180.02562 * 9 7 2 11 11 C 1.46954 * 111.00163 * 170.00032 * 10 9 7 12 12 C 1.53053 * 109.36708 * 183.18983 * 11 10 9 13 13 N 1.46958 * 109.36302 * 301.59720 * 12 11 10 14 14 C 1.46900 * 111.00025 * 183.18821 * 13 12 11 15 15 H 1.09002 * 109.46646 * 299.99868 * 14 13 12 16 16 C 1.52993 * 109.46926 * 60.00179 * 14 13 12 17 17 C 1.53008 * 109.46849 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47007 * 299.99923 * 17 16 14 19 19 C 1.52998 * 109.47322 * 59.99801 * 18 17 16 20 20 H 1.08995 * 109.47040 * 179.97438 * 19 18 17 21 21 N 1.46506 * 109.46656 * 60.00022 * 19 18 17 22 22 N 1.28879 * 125.44858 * 120.00442 * 21 19 18 23 23 C 1.31037 * 107.91890 * 180.02562 * 22 21 19 24 24 N 1.33316 * 106.90111 * 359.97438 * 23 22 21 25 25 N 1.28776 * 125.44804 * 299.69016 * 21 19 18 26 26 C 1.52997 * 109.47206 * 300.00380 * 19 18 17 27 27 C 1.46954 * 110.87853 * 59.31947 * 13 12 11 28 28 C 1.46958 * 111.00025 * 293.79880 * 10 9 7 29 29 H 0.96998 * 120.00019 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46964 * 60.00293 * 9 7 2 31 31 H 1.09001 * 109.47357 * 300.00003 * 9 7 2 32 32 H 1.09002 * 109.48987 * 63.22120 * 11 10 9 33 33 H 1.09004 * 109.48975 * 303.15399 * 11 10 9 34 34 H 1.09001 * 109.48854 * 181.62990 * 12 11 10 35 35 H 1.08994 * 109.50677 * 61.57310 * 12 11 10 36 36 H 1.09005 * 109.47506 * 299.99772 * 16 14 13 37 37 H 1.09002 * 109.47712 * 60.00342 * 16 14 13 38 38 H 1.09002 * 109.47164 * 59.99980 * 17 16 14 39 39 H 1.09004 * 109.46786 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47205 * 300.00031 * 18 17 16 41 41 H 1.09002 * 109.46857 * 180.02562 * 18 17 16 42 42 H 1.08001 * 126.55212 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47000 * 180.02562 * 26 19 18 44 44 H 1.09002 * 109.46917 * 299.99521 * 26 19 18 45 45 H 1.09002 * 109.48987 * 60.64675 * 27 13 12 46 46 H 1.09004 * 109.48975 * 180.71396 * 27 13 12 47 47 H 1.08996 * 109.48775 * 296.77701 * 28 10 9 48 48 H 1.09001 * 109.48994 * 56.84534 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5211 -4.8940 0.2377 12 6 2.5566 -6.0187 0.3094 13 7 3.3197 -6.0592 -0.9459 14 6 4.2743 -7.1758 -0.9459 15 1 4.9717 -7.0574 -0.1166 16 6 3.5157 -8.4952 -0.7902 17 6 4.5101 -9.6581 -0.7895 18 6 5.2845 -9.6677 -2.1091 19 6 6.0430 -8.3482 -2.2649 20 1 6.5949 -8.3552 -3.2047 21 7 6.9799 -8.1889 -1.1499 22 7 8.2590 -8.0743 -1.2590 23 6 8.7570 -7.9516 -0.0532 24 7 7.7306 -7.9954 0.7964 25 7 6.6567 -8.1355 0.0954 26 6 5.0486 -7.1853 -2.2655 27 6 4.0043 -4.7809 -1.1842 28 6 2.9688 -3.6562 -1.2558 29 1 -0.4850 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 0.8255 -5.0915 -0.5780 33 1 0.9735 -4.8434 1.1788 34 1 2.0487 -6.9718 0.4572 35 1 3.2358 -5.8356 1.1420 36 1 2.9644 -8.4886 0.1501 37 1 2.8183 -8.6136 -1.6195 38 1 5.2072 -9.5397 0.0400 39 1 3.9697 -10.5982 -0.6781 40 1 4.5873 -9.7862 -2.9386 41 1 5.9925 -10.4964 -2.1088 42 1 9.7998 -7.8369 0.2034 43 1 5.5890 -6.2453 -2.3770 44 1 4.3515 -7.3038 -3.0950 45 1 4.6999 -4.5834 -0.3685 46 1 4.5519 -4.8315 -2.1253 47 1 2.2897 -3.8397 -2.0884 48 1 3.4767 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173762227.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:19 Heat of formation + Delta-G solvation = 150.829940 kcal Electronic energy + Delta-G solvation = -28302.012422 eV Core-core repulsion = 24623.481292 eV Total energy + Delta-G solvation = -3678.531130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.202 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.55875 -39.91845 -37.96420 -35.18905 -34.05082 -32.87886 -32.44858 -31.22301 -30.10319 -30.02544 -27.24826 -25.17686 -24.75885 -24.07377 -23.39199 -22.03964 -21.76141 -21.19355 -20.29294 -19.16364 -17.49008 -17.14889 -16.60269 -16.29165 -15.84170 -15.18268 -14.79364 -14.62735 -14.46450 -14.18128 -14.08131 -13.82018 -13.61265 -13.32631 -12.98270 -12.86782 -12.76722 -12.68221 -12.17123 -12.00271 -11.92237 -11.54089 -11.32664 -11.17683 -11.06532 -10.95109 -10.88973 -10.75657 -10.66747 -10.60576 -10.48823 -10.35841 -10.20033 -10.04081 -9.68021 -9.14909 -8.42821 -8.08146 -7.19676 -6.01471 -4.02805 1.08059 1.70909 2.07860 3.32099 3.38374 3.43037 3.74604 3.83907 4.11409 4.17059 4.42676 4.43462 4.53559 4.71461 4.81940 4.92560 4.94905 5.00093 5.12156 5.26260 5.32948 5.33936 5.36114 5.50718 5.53086 5.59810 5.62731 5.67043 5.73781 5.83638 5.85641 5.89149 5.94642 5.98657 6.03129 6.08542 6.28135 6.33246 6.47809 6.62215 6.68931 7.20857 7.27064 7.36984 7.39989 7.81761 8.11346 8.23124 8.23389 8.57592 9.04803 9.61412 11.09410 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.003019 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.923470 B = 9273.391177 C =10051.637281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.057 3.943 12 C 0.060 3.940 13 N -0.532 5.532 14 C 0.073 3.927 15 H 0.065 0.935 16 C -0.108 4.108 17 C -0.132 4.132 18 C -0.128 4.128 19 C 0.159 3.841 20 H 0.125 0.875 21 N -0.129 5.129 22 N -0.316 5.316 23 C 0.138 3.862 24 N -0.297 5.297 25 N -0.047 5.047 26 C -0.128 4.128 27 C 0.055 3.945 28 C 0.070 3.930 29 H 0.261 0.739 30 H -0.009 1.009 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.232 0.768 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.035 0.965 46 H 0.069 0.931 47 H 0.028 0.972 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.584 -21.948 -5.793 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.068 4.068 13 N -0.257 5.257 14 C -0.036 4.036 15 H 0.083 0.917 16 C -0.145 4.145 17 C -0.170 4.170 18 C -0.167 4.167 19 C 0.058 3.942 20 H 0.143 0.857 21 N -0.043 5.043 22 N -0.166 5.166 23 C -0.165 4.165 24 N -0.167 5.167 25 N -0.040 5.040 26 C -0.166 4.166 27 C -0.073 4.073 28 C -0.059 4.059 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.248 0.752 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.047 0.953 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.781 -21.858 -5.706 25.478 hybrid contribution 1.074 1.102 -0.134 1.545 sum 12.855 -20.756 -5.840 25.103 Atomic orbital electron populations 1.69960 1.06048 1.26737 1.51085 1.24986 0.94857 0.99277 0.95478 0.86517 0.79839 0.83173 0.78009 1.20750 1.21235 1.19803 1.21157 0.93423 0.90004 1.49954 0.92002 1.19693 0.90031 0.87299 0.96077 1.62271 1.28162 1.02802 1.33150 1.22064 0.94751 0.89970 1.00390 1.22195 0.96130 0.98564 0.89885 1.62231 1.25459 1.02777 1.35253 1.21820 0.93704 0.91799 0.96251 0.91702 1.21560 0.97541 0.92536 1.02902 1.21789 0.99023 0.99005 0.97204 1.21958 0.99629 0.94138 1.00955 1.22137 0.88183 0.98648 0.85219 0.85747 1.50520 1.03950 1.42380 1.07415 1.74698 0.93692 1.21494 1.26673 1.27326 1.02361 1.02415 0.84384 1.75965 0.95358 1.18170 1.27160 1.78922 1.20871 1.14717 0.89536 1.22084 0.97334 0.96398 1.00824 1.22290 0.96287 0.88922 0.99796 1.21963 0.95379 0.97251 0.91331 0.92943 0.99100 0.95242 0.95196 0.91082 0.90820 0.94307 0.91129 0.91086 0.89893 0.91124 0.88200 0.91003 0.75162 0.90420 0.87478 0.94666 0.91294 0.95346 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.42 8.47 -34.44 -0.29 -14.71 16 8 H 0.06 1.75 7.13 -52.48 -0.37 1.37 16 9 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 10 N -0.54 -11.94 4.70 -235.91 -1.11 -13.05 16 11 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 12 C 0.06 0.93 5.32 -3.76 -0.02 0.91 16 13 N -0.53 -7.66 4.58 -226.49 -1.04 -8.70 16 14 C 0.07 0.84 1.66 -67.72 -0.11 0.73 16 15 H 0.07 0.90 5.47 -51.93 -0.28 0.61 16 16 C -0.11 -1.03 4.97 -26.73 -0.13 -1.16 16 17 C -0.13 -1.07 5.64 -26.73 -0.15 -1.22 16 18 C -0.13 -0.80 5.64 -26.73 -0.15 -0.96 16 19 C 0.16 1.22 3.60 -67.93 -0.24 0.97 16 20 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 21 N -0.13 -1.36 3.73 -4.95 -0.02 -1.38 16 22 N -0.32 -3.36 12.13 29.34 0.36 -3.01 16 23 C 0.14 1.37 13.26 -91.59 -1.21 0.16 16 24 N -0.30 -3.76 12.50 29.33 0.37 -3.40 16 25 N -0.05 -0.59 7.37 60.35 0.44 -0.14 16 26 C -0.13 -1.17 4.57 -26.73 -0.12 -1.29 16 27 C 0.05 0.89 5.23 -3.77 -0.02 0.87 16 28 C 0.07 1.38 5.43 -3.76 -0.02 1.36 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.07 0.97 6.14 -51.93 -0.32 0.65 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.73 6.34 -51.93 -0.33 0.40 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.84 5.50 -51.93 -0.29 0.56 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.23 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.08 0.80 6.28 -51.93 -0.33 0.47 16 44 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.96 6.06 -51.93 -0.31 0.65 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 1.80 6.79 -51.93 -0.35 1.45 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -32.81 360.44 -10.10 -42.91 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.63 Total: -2.60 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.62 Total: -6.67 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.26 Total: -55.90 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.81 -10.10 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173762227.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.739 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds