Wall clock time and date at job start Tue Mar 31 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.52206 * 2 1 4 4 C 1.52762 * 109.35439 * 120.07818 * 2 1 3 5 5 N 1.46927 * 109.00648 * 65.50170 * 4 2 1 6 6 C 1.34772 * 120.63032 * 233.57662 * 5 4 2 7 7 O 1.21282 * 120.00079 * 359.72542 * 6 5 4 8 8 C 1.50698 * 120.00376 * 179.72125 * 6 5 4 9 9 C 1.50697 * 109.47282 * 180.02562 * 8 6 5 10 10 C 1.39873 * 125.89933 * 125.00165 * 9 8 6 11 11 C 1.35316 * 107.91987 * 179.97438 * 10 9 8 12 12 N 1.34943 * 107.74531 * 0.02562 * 11 10 9 13 13 C 1.46500 * 126.03414 * 180.25880 * 12 11 10 14 14 N 1.30832 * 125.89900 * 304.97351 * 9 8 6 15 15 C 1.46928 * 118.73869 * 53.30557 * 5 4 2 16 16 C 1.53183 * 108.77630 * 306.64201 * 15 5 4 17 17 C 1.53037 * 109.49835 * 239.92091 * 2 1 3 18 18 H 1.08991 * 109.46141 * 181.39771 * 17 2 1 19 19 C 1.52999 * 109.45017 * 61.42859 * 17 2 1 20 20 N 1.46497 * 109.47252 * 174.94112 * 19 17 2 21 21 C 1.36936 * 120.00441 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99875 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00311 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99947 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00037 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46979 * 90.00457 * 25 23 21 27 27 H 1.48499 * 109.47335 * 210.00583 * 25 23 21 28 28 H 1.48501 * 109.47247 * 330.00304 * 25 23 21 29 29 H 1.08998 * 109.47518 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47179 * 300.08608 * 1 2 3 31 31 H 1.09008 * 109.46606 * 60.07639 * 1 2 3 32 32 H 1.09002 * 109.51283 * 305.61647 * 4 2 1 33 33 H 1.09009 * 109.42766 * 185.33210 * 4 2 1 34 34 H 1.08998 * 109.47349 * 59.99904 * 8 6 5 35 35 H 1.09005 * 109.46893 * 300.00112 * 8 6 5 36 36 H 1.07997 * 126.03616 * 359.95235 * 10 9 8 37 37 H 1.07996 * 126.12469 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.47763 * 269.71272 * 13 12 11 39 39 H 1.09004 * 109.47211 * 29.71722 * 13 12 11 40 40 H 1.09012 * 109.46942 * 149.71408 * 13 12 11 41 41 H 1.08999 * 109.58353 * 66.43370 * 15 5 4 42 42 H 1.08998 * 109.58380 * 186.85222 * 15 5 4 43 43 H 1.09000 * 109.50087 * 174.59064 * 16 15 5 44 44 H 1.09000 * 109.50194 * 294.65407 * 16 15 5 45 45 H 1.09005 * 109.47111 * 294.93419 * 19 17 2 46 46 H 1.09002 * 109.47159 * 54.93747 * 19 17 2 47 47 H 0.97009 * 119.99913 * 359.97438 * 20 19 17 48 48 H 0.97002 * 119.99938 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0363 -0.7223 1.2472 5 7 1.6514 -2.1382 1.1695 6 6 0.9739 -2.7219 2.1778 7 8 0.6805 -2.0789 3.1634 8 6 0.5807 -4.1734 2.0805 9 6 -0.1617 -4.5775 3.3282 10 6 -1.4344 -5.1558 3.3742 11 6 -1.7480 -5.3693 4.6731 12 7 -0.7108 -4.9407 5.4224 13 6 -0.6258 -4.9885 6.8842 14 7 0.2732 -4.4484 4.5554 15 6 2.0139 -2.9040 -0.0308 16 6 1.5030 -2.1558 -1.2660 17 6 2.0408 -0.7230 -1.2483 18 1 3.1305 -0.7444 -1.2353 19 6 1.5605 0.0172 -2.4982 20 7 2.1475 -0.6026 -3.6887 21 6 1.8595 -0.1061 -4.9319 22 1 1.1991 0.7423 -5.0348 23 6 2.4153 -0.6937 -6.0600 24 7 2.1387 -0.2161 -7.2549 25 14 3.5569 -2.1615 -5.8822 26 1 2.7619 -3.4150 -5.9256 27 1 4.5411 -2.1608 -6.9942 28 1 4.2753 -2.0756 -4.5854 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5152 0.8892 31 1 -0.3633 0.5127 -0.8908 32 1 1.5925 -0.2711 2.1346 33 1 3.1222 -0.6411 1.2976 34 1 1.4760 -4.7861 1.9756 35 1 -0.0625 -4.3182 1.2125 36 1 -2.0569 -5.3901 2.5234 37 1 -2.6645 -5.8039 5.0437 38 1 -1.0257 -4.0646 7.3019 39 1 -1.2043 -5.8350 7.2543 40 1 0.4162 -5.1017 7.1841 41 1 3.0978 -3.0043 -0.0867 42 1 1.5553 -3.8918 0.0137 43 1 1.8480 -2.6628 -2.1671 44 1 0.4132 -2.1359 -1.2545 45 1 0.4735 -0.0385 -2.5582 46 1 1.8684 1.0614 -2.4429 47 1 2.7410 -1.3644 -3.5963 48 1 2.5275 -0.6265 -8.0432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184342604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:52 Heat of formation + Delta-G solvation = 56.883326 kcal Electronic energy + Delta-G solvation = -27280.509270 eV Core-core repulsion = 23565.611558 eV Total energy + Delta-G solvation = -3714.897712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41981 -40.32625 -38.10119 -35.06708 -34.14644 -33.42011 -31.89862 -30.69114 -30.66010 -29.89100 -27.27886 -26.95967 -25.63927 -23.54042 -22.99050 -21.50138 -21.34003 -20.64574 -19.37637 -18.38269 -17.60734 -17.20379 -17.00608 -15.82049 -15.73317 -15.48937 -15.00860 -14.64315 -14.29947 -14.20550 -13.98979 -13.95662 -13.58015 -13.39160 -13.12272 -12.96115 -12.82201 -12.63922 -12.57419 -12.43046 -12.35627 -12.06706 -11.60037 -11.40180 -11.36516 -11.02344 -10.80843 -10.74980 -10.46502 -10.25964 -10.12581 -10.05822 -9.76014 -9.57112 -9.39084 -8.87538 -8.75344 -8.57504 -7.20631 -5.75779 -3.10777 1.71078 2.29348 2.50702 2.65916 3.06211 3.36329 3.37936 3.44746 4.17398 4.42798 4.54273 4.59157 4.64189 4.77699 4.82430 4.87695 4.95933 4.99780 5.07076 5.08175 5.17831 5.21605 5.38908 5.45615 5.49641 5.56852 5.59051 5.64868 5.75150 5.78404 5.81623 5.83327 5.88750 5.97337 6.16189 6.21471 6.32639 6.34665 6.40449 6.45965 6.59129 6.73267 6.79634 6.85987 7.38855 7.56287 8.01294 8.19147 8.43409 9.22896 9.95168 10.15355 11.42845 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.024131 B = 0.002560 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.038374 B =10935.193399 C =11437.569753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.119 3.881 5 N -0.608 5.608 6 C 0.519 3.481 7 O -0.529 6.529 8 C -0.060 4.060 9 C 0.084 3.916 10 C -0.265 4.265 11 C 0.049 3.951 12 N -0.378 5.378 13 C 0.103 3.897 14 N -0.264 5.264 15 C 0.104 3.896 16 C -0.131 4.131 17 C -0.092 4.092 18 H 0.071 0.929 19 C 0.162 3.838 20 N -0.755 5.755 21 C -0.241 4.241 22 H 0.089 0.911 23 C 0.002 3.998 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.030 0.970 46 H 0.025 0.975 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -11.718 26.355 29.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.004 4.004 5 N -0.342 5.342 6 C 0.306 3.694 7 O -0.405 6.405 8 C -0.101 4.101 9 C -0.083 4.083 10 C -0.295 4.295 11 C -0.097 4.097 12 N -0.161 5.161 13 C -0.038 4.038 14 N -0.086 5.086 15 C -0.019 4.019 16 C -0.169 4.169 17 C -0.111 4.111 18 H 0.089 0.911 19 C 0.035 3.965 20 N -0.401 5.401 21 C -0.371 4.371 22 H 0.107 0.893 23 C -0.194 4.194 24 N -0.583 5.583 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.166 0.834 37 H 0.190 0.810 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.740 -10.845 27.643 30.071 hybrid contribution 0.119 -1.335 -0.664 1.496 sum -4.621 -12.180 26.979 29.960 Atomic orbital electron populations 1.21864 0.94791 1.01978 1.01567 1.21386 0.96791 0.99513 0.94051 0.89931 1.21555 0.99323 0.80340 0.99143 1.48063 1.56424 1.11533 1.18180 1.20290 0.77595 0.88955 0.82558 1.90716 1.54096 1.65015 1.30698 1.20079 1.01315 0.94254 0.94485 1.21543 0.94758 0.99146 0.92881 1.21366 0.98317 1.12902 0.96878 1.22479 0.94184 1.01251 0.91781 1.48532 1.13045 1.47780 1.06745 1.21823 1.04612 1.02980 0.74430 1.77420 1.12381 1.19036 0.99804 1.21875 1.00553 0.94970 0.84494 1.22000 1.01858 0.96057 0.96946 1.21352 1.00213 0.94712 0.94859 0.91109 1.20699 0.96307 0.94860 0.84600 1.42737 1.57230 1.37530 1.02621 1.19066 1.23955 1.12206 0.81913 0.89321 1.24684 1.00330 0.99219 0.95136 1.69704 1.48417 1.43184 0.97038 0.86545 0.81253 0.83808 0.76916 1.21064 1.21811 1.20344 0.92592 0.93302 0.91882 0.89201 0.91747 0.87374 0.86864 0.83435 0.81037 0.90798 0.89599 0.89388 0.91172 0.89847 0.90126 0.90833 0.95199 0.95687 0.80745 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.38 37.16 0.31 -1.54 16 2 C -0.10 -1.22 2.72 -90.72 -0.25 -1.46 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.44 5.79 -3.93 -0.02 1.41 16 5 N -0.61 -7.15 2.42 -173.03 -0.42 -7.57 16 6 C 0.52 6.81 7.69 -10.99 -0.08 6.73 16 7 O -0.53 -9.02 14.97 5.56 0.08 -8.94 16 8 C -0.06 -0.61 4.62 -29.04 -0.13 -0.74 16 9 C 0.08 1.03 6.01 -82.41 -0.50 0.53 16 10 C -0.27 -2.68 10.72 -40.01 -0.43 -3.11 16 11 C 0.05 0.43 11.49 -17.23 -0.20 0.23 16 12 N -0.38 -3.93 4.01 -68.16 -0.27 -4.21 16 13 C 0.10 0.61 11.47 59.85 0.69 1.29 16 14 N -0.26 -3.65 11.92 33.67 0.40 -3.24 16 15 C 0.10 1.06 6.34 -3.71 -0.02 1.04 16 16 C -0.13 -1.67 4.90 -26.61 -0.13 -1.80 16 17 C -0.09 -1.31 1.96 -90.58 -0.18 -1.49 16 18 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 19 C 0.16 3.01 5.18 -4.04 -0.02 2.99 16 20 N -0.76 -17.41 5.12 -59.91 -0.31 -17.72 16 21 C -0.24 -6.78 10.47 -15.06 -0.16 -6.93 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 24 N -0.94 -29.31 13.97 55.49 0.78 -28.53 16 25 Si 0.88 21.70 27.74 -169.99 -4.71 16.99 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 29 H 0.06 0.73 5.97 -51.93 -0.31 0.42 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.84 6.58 -51.92 -0.34 0.50 16 32 H 0.09 1.19 7.01 -51.93 -0.36 0.83 16 33 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.11 0.90 7.94 -51.93 -0.41 0.48 16 35 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.65 5.93 -51.93 -0.31 0.35 16 43 H 0.08 1.14 7.15 -51.93 -0.37 0.77 16 44 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 45 H 0.03 0.57 6.74 -51.93 -0.35 0.22 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.36 7.99 4.71 -40.82 -0.19 7.79 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -37.10 375.95 -7.63 -44.72 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.62 Total: 5.74 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.22 Total: -2.90 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.18 Total: -61.27 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.10 -7.63 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184342604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.606 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds