Wall clock time and date at job start Tue Mar 31 2020 04:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47221 * 2 1 4 4 N 1.46500 * 109.47212 * 120.00159 * 2 1 3 5 5 C 1.36931 * 120.00170 * 275.00155 * 4 2 1 6 6 H 1.08000 * 119.99891 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00297 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00021 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46882 * 90.00196 * 9 7 5 11 11 H 1.48503 * 109.47079 * 209.99723 * 9 7 5 12 12 H 1.48497 * 109.47079 * 329.99724 * 9 7 5 13 13 C 1.53004 * 109.46937 * 240.00075 * 2 1 3 14 14 H 1.09003 * 109.52623 * 299.91714 * 13 2 1 15 15 C 1.53036 * 109.49800 * 60.00211 * 13 2 1 16 16 C 1.53045 * 109.53995 * 181.31558 * 15 13 2 17 17 C 1.53191 * 109.31061 * 298.63600 * 16 15 13 18 18 N 1.46924 * 108.77693 * 54.63266 * 17 16 15 19 19 C 1.34773 * 120.63180 * 126.37172 * 18 17 16 20 20 O 1.21283 * 120.00360 * 179.72484 * 19 18 17 21 21 C 1.50706 * 120.00081 * 359.97438 * 19 18 17 22 22 C 1.50696 * 109.47259 * 179.72770 * 21 19 18 23 23 C 1.39864 * 125.89922 * 124.71541 * 22 21 19 24 24 C 1.35319 * 107.92185 * 179.86251 * 23 22 21 25 25 N 1.34943 * 107.74323 * 0.39627 * 24 23 22 26 26 C 1.46503 * 126.03648 * 179.75101 * 25 24 23 27 27 N 1.30835 * 125.89759 * 305.02217 * 22 21 19 28 28 C 1.46931 * 118.74139 * 306.64213 * 18 17 16 29 29 H 1.08995 * 109.47208 * 299.99675 * 1 2 3 30 30 H 1.09002 * 109.47027 * 60.00057 * 1 2 3 31 31 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00355 * 94.99916 * 4 2 1 33 33 H 0.97006 * 120.00330 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46377 * 61.29347 * 15 13 2 35 35 H 1.09001 * 109.45993 * 301.33532 * 15 13 2 36 36 H 1.08990 * 109.49843 * 178.68071 * 16 15 13 37 37 H 1.09006 * 109.49499 * 58.58279 * 16 15 13 38 38 H 1.08999 * 109.58467 * 294.84696 * 17 16 15 39 39 H 1.08996 * 109.70609 * 174.48858 * 17 16 15 40 40 H 1.09001 * 109.46564 * 299.73030 * 21 19 18 41 41 H 1.08998 * 109.47012 * 59.72084 * 21 19 18 42 42 H 1.08007 * 126.04425 * 359.97438 * 23 22 21 43 43 H 1.08002 * 126.12789 * 180.14519 * 24 23 22 44 44 H 1.08993 * 109.47083 * 269.97381 * 26 25 24 45 45 H 1.08999 * 109.47127 * 29.97196 * 26 25 24 46 46 H 1.09005 * 109.46778 * 149.97106 * 26 25 24 47 47 H 1.08995 * 109.59030 * 173.14421 * 28 18 17 48 48 H 1.08998 * 109.58220 * 293.57198 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6621 3.5092 8 7 2.9234 -1.9393 3.4503 9 14 2.7904 0.2700 5.1182 10 1 1.5226 0.1797 5.8862 11 1 3.8945 -0.3240 5.9141 12 1 3.0964 1.6949 4.8334 13 6 2.0400 -0.7213 -1.2493 14 1 1.6783 -1.7495 -1.2495 15 6 1.5302 -0.0003 -2.4992 16 6 2.0126 -0.7398 -3.7493 17 6 3.5442 -0.7369 -3.7802 18 7 4.0438 -1.2971 -2.5172 19 6 4.9180 -2.3228 -2.5191 20 8 5.3269 -2.7731 -1.4699 21 6 5.3919 -2.9065 -3.8252 22 6 6.3613 -4.0276 -3.5521 23 6 6.2511 -5.3400 -4.0229 24 6 7.3157 -6.0378 -3.5639 25 7 8.0681 -5.1990 -2.8214 26 6 9.3132 -5.5416 -2.1296 27 7 7.4483 -3.9427 -2.8290 28 6 3.5676 -0.7218 -1.2518 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.2461 -2.3968 4.2425 34 1 1.9125 1.0205 -2.5110 35 1 0.4404 0.0205 -2.4874 36 1 1.6297 -0.2393 -4.6385 37 1 1.6511 -1.7680 -3.7259 38 1 3.9053 0.2851 -3.8949 39 1 3.8961 -1.3445 -4.6139 40 1 4.5378 -3.2922 -4.3819 41 1 5.8874 -2.1321 -4.4107 42 1 5.4575 -5.7276 -4.6447 43 1 7.5236 -7.0804 -3.7540 44 1 9.0855 -5.8858 -1.1208 45 1 9.8267 -6.3326 -2.6761 46 1 9.9538 -4.6612 -2.0772 47 1 3.9328 -1.3208 -0.4177 48 1 3.9308 0.3014 -1.1562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753794555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:59 Heat of formation + Delta-G solvation = 53.026267 kcal Electronic energy + Delta-G solvation = -27471.508228 eV Core-core repulsion = 23756.443261 eV Total energy + Delta-G solvation = -3715.064967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.21011 -39.86610 -37.65000 -35.33266 -33.88566 -32.87057 -31.66129 -30.78657 -29.98393 -29.34537 -28.05683 -26.01058 -25.04195 -23.71137 -22.88150 -21.25768 -21.14754 -20.04668 -19.44862 -18.48102 -17.19464 -17.03431 -16.70296 -15.60952 -15.41877 -15.21209 -14.80178 -14.37805 -14.16145 -14.05241 -13.77743 -13.63648 -13.33520 -13.09823 -12.92272 -12.73850 -12.61826 -12.57436 -12.38805 -12.22577 -11.94419 -11.88542 -11.25794 -11.02216 -10.91183 -10.80175 -10.63667 -10.53888 -10.49040 -10.19168 -10.07243 -9.76220 -9.51293 -9.42598 -9.16968 -8.81845 -8.55985 -8.28306 -6.84759 -5.64612 -2.93789 1.91289 2.50227 2.71055 2.97434 3.33933 3.50242 3.54829 3.57237 4.37131 4.62693 4.67007 4.74127 4.79895 4.90986 4.99049 5.04342 5.10393 5.15536 5.29774 5.32800 5.34654 5.46546 5.52907 5.61475 5.67251 5.76602 5.79355 5.87888 5.89006 5.99112 6.01351 6.09753 6.21155 6.27796 6.29841 6.51594 6.56884 6.61232 6.63206 6.82634 6.89166 6.99357 7.00167 7.17922 7.71096 7.77198 7.79517 8.52804 8.54266 9.63861 10.22520 10.56736 11.57619 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003616 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.512992 B = 7741.684112 C = 9877.413998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.103 4.103 14 H 0.068 0.932 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.615 5.615 19 C 0.511 3.489 20 O -0.512 6.512 21 C -0.057 4.057 22 C 0.082 3.918 23 C -0.267 4.267 24 C 0.048 3.952 25 N -0.377 5.377 26 C 0.103 3.897 27 N -0.260 5.260 28 C 0.124 3.876 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.172 0.828 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -4.432 -22.604 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.017 4.017 18 N -0.349 5.349 19 C 0.297 3.703 20 O -0.386 6.386 21 C -0.098 4.098 22 C -0.085 4.085 23 C -0.296 4.296 24 C -0.098 4.098 25 N -0.160 5.160 26 C -0.039 4.039 27 N -0.082 5.082 28 C 0.003 3.997 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.164 0.836 43 H 0.189 0.811 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.124 0.876 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.867 -3.864 -21.078 22.503 hybrid contribution -0.456 -0.496 0.482 0.828 sum 6.410 -4.360 -20.597 22.007 Atomic orbital electron populations 1.22480 0.99387 1.00752 0.99814 1.20172 0.91762 0.95238 0.85862 0.93589 1.42455 1.78051 1.10770 1.05278 1.19192 1.36623 0.93755 0.87359 0.91321 1.24728 1.02248 0.95919 0.97949 1.69672 1.50734 1.08616 1.28690 0.86247 0.77187 0.78821 0.84277 1.21882 1.21882 1.20826 1.21680 0.94966 1.00396 0.95250 0.91305 1.21621 1.00953 0.99048 0.93633 1.21923 0.95021 1.01552 0.98729 1.21723 0.94688 0.99229 0.86073 1.48177 1.44764 1.34364 1.07644 1.20310 0.79238 0.79785 0.91002 1.90814 1.55152 1.59449 1.33170 1.20058 0.97345 0.95500 0.96932 1.21554 0.94829 0.94970 0.97172 1.21316 1.02779 0.93601 1.11923 1.22460 0.93596 0.97312 0.96432 1.48546 1.20376 1.07602 1.39455 1.21832 0.82572 1.02226 0.97266 1.77468 1.10020 1.00277 1.20422 1.21559 0.93636 0.98890 0.85636 0.92948 0.94301 0.93652 0.78182 0.93591 0.91928 0.91301 0.91069 0.91571 0.91493 0.90210 0.87267 0.87670 0.83596 0.81117 0.90632 0.89682 0.89353 0.87640 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.14 37.16 0.34 -2.64 16 2 C 0.18 3.59 2.48 -67.93 -0.17 3.42 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.52 16 4 N -0.72 -18.61 4.52 -53.43 -0.24 -18.85 16 5 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -29.42 13.06 55.49 0.72 -28.69 16 9 Si 0.90 23.21 29.55 -169.99 -5.02 18.19 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 13 C -0.10 -1.72 1.96 -90.72 -0.18 -1.90 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.11 -1.42 4.85 -26.69 -0.13 -1.55 16 16 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 17 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 18 N -0.61 -9.19 2.98 -173.03 -0.52 -9.70 16 19 C 0.51 8.57 7.69 -10.98 -0.08 8.48 16 20 O -0.51 -11.54 14.97 5.56 0.08 -11.46 16 21 C -0.06 -0.68 4.62 -29.03 -0.13 -0.82 16 22 C 0.08 1.19 6.02 -82.41 -0.50 0.70 16 23 C -0.27 -3.19 10.72 -40.01 -0.43 -3.62 16 24 C 0.05 0.52 11.49 -17.22 -0.20 0.32 16 25 N -0.38 -4.91 4.01 -68.16 -0.27 -5.18 16 26 C 0.10 0.88 11.47 59.85 0.69 1.56 16 27 N -0.26 -4.33 11.92 33.67 0.40 -3.93 16 28 C 0.12 2.26 5.44 -3.93 -0.02 2.24 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.38 10.79 7.61 -40.82 -0.31 10.48 16 33 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 40 H 0.11 0.96 7.69 -51.93 -0.40 0.56 16 41 H 0.11 1.01 7.93 -51.93 -0.41 0.60 16 42 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.11 2.45 6.50 -51.93 -0.34 2.12 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -38.31 384.40 -8.19 -46.50 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.89 Total: 8.94 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.24 Total: -1.61 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: 0.10 Total: -66.36 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.31 -8.19 -46.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753794555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.527 kcal (2) G-P(sol) polarization free energy of solvation -38.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds