Wall clock time and date at job start Tue Mar 31 2020 04:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47221 * 2 1 4 4 N 1.46500 * 109.47212 * 120.00159 * 2 1 3 5 5 C 1.36931 * 120.00170 * 275.00155 * 4 2 1 6 6 H 1.08000 * 119.99891 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00297 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00021 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46882 * 90.00196 * 9 7 5 11 11 H 1.48503 * 109.47079 * 209.99723 * 9 7 5 12 12 H 1.48497 * 109.47079 * 329.99724 * 9 7 5 13 13 C 1.53004 * 109.46937 * 240.00075 * 2 1 3 14 14 H 1.09003 * 109.52623 * 299.91714 * 13 2 1 15 15 C 1.53036 * 109.49800 * 60.00211 * 13 2 1 16 16 C 1.53045 * 109.53995 * 181.31558 * 15 13 2 17 17 C 1.53191 * 109.31061 * 298.63600 * 16 15 13 18 18 N 1.46924 * 108.77693 * 54.63266 * 17 16 15 19 19 C 1.34773 * 120.63180 * 126.37172 * 18 17 16 20 20 O 1.21283 * 120.00360 * 179.72484 * 19 18 17 21 21 C 1.50706 * 120.00081 * 359.97438 * 19 18 17 22 22 C 1.50696 * 109.47259 * 179.72770 * 21 19 18 23 23 C 1.39864 * 125.89922 * 124.71541 * 22 21 19 24 24 C 1.35319 * 107.92185 * 179.86251 * 23 22 21 25 25 N 1.34943 * 107.74323 * 0.39627 * 24 23 22 26 26 C 1.46503 * 126.03648 * 179.75101 * 25 24 23 27 27 N 1.30835 * 125.89759 * 305.02217 * 22 21 19 28 28 C 1.46931 * 118.74139 * 306.64213 * 18 17 16 29 29 H 1.08995 * 109.47208 * 299.99675 * 1 2 3 30 30 H 1.09002 * 109.47027 * 60.00057 * 1 2 3 31 31 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 32 32 H 0.97003 * 120.00355 * 94.99916 * 4 2 1 33 33 H 0.97006 * 120.00330 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.46377 * 61.29347 * 15 13 2 35 35 H 1.09001 * 109.45993 * 301.33532 * 15 13 2 36 36 H 1.08990 * 109.49843 * 178.68071 * 16 15 13 37 37 H 1.09006 * 109.49499 * 58.58279 * 16 15 13 38 38 H 1.08999 * 109.58467 * 294.84696 * 17 16 15 39 39 H 1.08996 * 109.70609 * 174.48858 * 17 16 15 40 40 H 1.09001 * 109.46564 * 299.73030 * 21 19 18 41 41 H 1.08998 * 109.47012 * 59.72084 * 21 19 18 42 42 H 1.08007 * 126.04425 * 359.97438 * 23 22 21 43 43 H 1.08002 * 126.12789 * 180.14519 * 24 23 22 44 44 H 1.08993 * 109.47083 * 269.97381 * 26 25 24 45 45 H 1.08999 * 109.47127 * 29.97196 * 26 25 24 46 46 H 1.09005 * 109.46778 * 149.97106 * 26 25 24 47 47 H 1.08995 * 109.59030 * 173.14421 * 28 18 17 48 48 H 1.08998 * 109.58220 * 293.57198 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6621 3.5092 8 7 2.9234 -1.9393 3.4503 9 14 2.7904 0.2700 5.1182 10 1 1.5226 0.1797 5.8862 11 1 3.8945 -0.3240 5.9141 12 1 3.0964 1.6949 4.8334 13 6 2.0400 -0.7213 -1.2493 14 1 1.6783 -1.7495 -1.2495 15 6 1.5302 -0.0003 -2.4992 16 6 2.0126 -0.7398 -3.7493 17 6 3.5442 -0.7369 -3.7802 18 7 4.0438 -1.2971 -2.5172 19 6 4.9180 -2.3228 -2.5191 20 8 5.3269 -2.7731 -1.4699 21 6 5.3919 -2.9065 -3.8252 22 6 6.3613 -4.0276 -3.5521 23 6 6.2511 -5.3400 -4.0229 24 6 7.3157 -6.0378 -3.5639 25 7 8.0681 -5.1990 -2.8214 26 6 9.3132 -5.5416 -2.1296 27 7 7.4483 -3.9427 -2.8290 28 6 3.5676 -0.7218 -1.2518 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.2461 -2.3968 4.2425 34 1 1.9125 1.0205 -2.5110 35 1 0.4404 0.0205 -2.4874 36 1 1.6297 -0.2393 -4.6385 37 1 1.6511 -1.7680 -3.7259 38 1 3.9053 0.2851 -3.8949 39 1 3.8961 -1.3445 -4.6139 40 1 4.5378 -3.2922 -4.3819 41 1 5.8874 -2.1321 -4.4107 42 1 5.4575 -5.7276 -4.6447 43 1 7.5236 -7.0804 -3.7540 44 1 9.0855 -5.8858 -1.1208 45 1 9.8267 -6.3326 -2.6761 46 1 9.9538 -4.6612 -2.0772 47 1 3.9328 -1.3208 -0.4177 48 1 3.9308 0.3014 -1.1562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753794555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:45:58 Heat of formation + Delta-G solvation = 25.472287 kcal Electronic energy + Delta-G solvation = -27472.703058 eV Core-core repulsion = 23756.443261 eV Total energy + Delta-G solvation = -3716.259797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.13255 -41.08700 -39.04175 -36.91282 -34.86928 -34.56449 -33.08233 -31.90160 -31.13003 -30.65236 -29.60949 -26.94447 -26.39976 -25.42705 -24.22339 -22.43021 -22.03070 -21.30057 -20.81845 -19.58093 -19.15552 -18.13735 -17.78573 -16.83887 -16.69820 -16.49191 -16.23156 -15.63853 -15.59066 -15.28662 -14.98442 -14.79729 -14.59094 -14.33120 -14.08988 -13.95037 -13.89852 -13.60463 -13.47036 -13.35310 -13.12464 -12.99763 -12.87184 -12.80346 -12.51970 -12.32619 -12.15804 -11.95155 -11.78599 -11.63284 -11.48268 -11.33807 -11.15598 -10.96669 -10.72528 -10.17728 -9.54339 -9.43636 -8.99681 -7.93018 -5.21603 1.02363 1.42289 1.45490 1.53469 1.69385 1.73899 1.77538 2.23081 2.55119 3.40446 3.50920 3.69053 3.84196 3.89585 3.92324 4.02036 4.15254 4.19931 4.26622 4.34339 4.38551 4.41664 4.48345 4.50175 4.63094 4.64498 4.70992 4.81601 4.84778 4.89621 4.91378 4.98009 5.00999 5.06464 5.09881 5.15547 5.23714 5.30991 5.41846 5.50707 5.58086 5.61290 5.67568 5.72902 6.23886 6.27919 6.54001 6.84583 7.30840 7.32787 8.11774 8.33197 9.30796 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003616 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.512992 B = 7741.684112 C = 9877.413998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.171 3.829 3 H 0.045 0.955 4 N -0.738 5.738 5 C -0.233 4.233 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.974 5.974 9 Si 0.971 3.029 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.266 1.266 13 C -0.088 4.088 14 H 0.048 0.952 15 C -0.110 4.110 16 C -0.127 4.127 17 C 0.096 3.904 18 N -0.610 5.610 19 C 0.500 3.500 20 O -0.586 6.586 21 C -0.046 4.046 22 C 0.061 3.939 23 C -0.283 4.283 24 C 0.053 3.947 25 N -0.390 5.390 26 C 0.094 3.906 27 N -0.327 5.327 28 C 0.132 3.868 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.366 0.634 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.174 0.826 43 H 0.216 0.784 44 H 0.069 0.931 45 H 0.127 0.873 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -3.666 -26.385 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.063 3.937 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.365 4.365 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.625 5.625 9 Si 0.800 3.200 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.191 1.191 13 C -0.108 4.108 14 H 0.067 0.933 15 C -0.148 4.148 16 C -0.165 4.165 17 C -0.024 4.024 18 N -0.343 5.343 19 C 0.289 3.711 20 O -0.465 6.465 21 C -0.086 4.086 22 C -0.105 4.105 23 C -0.312 4.312 24 C -0.093 4.093 25 N -0.172 5.172 26 C -0.046 4.046 27 N -0.150 5.150 28 C 0.009 3.991 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.197 0.803 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.167 0.833 41 H 0.151 0.849 42 H 0.192 0.808 43 H 0.232 0.768 44 H 0.088 0.912 45 H 0.145 0.855 46 H 0.101 0.899 47 H 0.060 0.940 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.736 -3.018 -24.944 25.773 hybrid contribution -0.106 -0.722 1.588 1.748 sum 5.630 -3.740 -23.356 24.314 Atomic orbital electron populations 1.22310 0.97262 1.00572 1.01058 1.20504 0.93103 0.94901 0.85224 0.93685 1.42707 1.78394 1.10113 1.06581 1.19635 1.34403 0.94133 0.88285 0.90410 1.25588 1.03285 0.96821 1.01682 1.69871 1.52990 1.10539 1.29134 0.85162 0.76806 0.78109 0.79881 1.21194 1.22801 1.19120 1.21512 0.93578 0.99515 0.96214 0.93301 1.21627 1.01678 0.99242 0.92204 1.21928 0.94415 1.01492 0.98681 1.22198 0.95175 1.00676 0.84385 1.48287 1.44064 1.33740 1.08236 1.21288 0.78445 0.79406 0.91944 1.90784 1.57779 1.61818 1.36138 1.20189 0.98459 0.95711 0.94290 1.22088 0.94692 0.96752 0.96996 1.21759 1.04076 0.92691 1.12637 1.23240 0.92650 0.98804 0.94587 1.48900 1.21377 1.07094 1.39871 1.22115 0.81585 1.03276 0.97594 1.77362 1.11954 1.03061 1.22618 1.21151 0.94753 0.97331 0.85878 0.94780 0.89883 0.94528 0.80257 0.94436 0.90849 0.89963 0.86918 0.91886 0.89878 0.86368 0.83254 0.84852 0.80833 0.76779 0.91193 0.85455 0.89935 0.93964 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.14 71.98 0.66 -4.71 16 2 C 0.17 6.90 2.48 44.99 0.11 7.01 16 3 H 0.05 1.82 8.08 -2.39 -0.02 1.81 16 4 N -0.74 -39.81 4.52 -322.94 -1.46 -41.27 16 5 C -0.23 -13.65 9.93 84.03 0.83 -12.81 16 6 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 7 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 8 N -0.97 -65.06 13.06 21.65 0.28 -64.77 16 9 Si 0.97 49.23 29.55 68.60 2.03 51.26 16 10 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.30 -15.55 7.11 99.48 0.71 -14.85 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 C -0.09 -2.95 1.96 -10.86 -0.02 -2.97 16 14 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 15 C -0.11 -2.36 4.85 30.62 0.15 -2.21 16 16 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 17 C 0.10 1.57 6.34 86.36 0.55 2.12 16 18 N -0.61 -18.05 2.98 -819.73 -2.44 -20.49 16 19 C 0.50 17.20 7.69 87.66 0.67 17.87 16 20 O -0.59 -28.60 14.97 -3.04 -0.05 -28.65 16 21 C -0.05 -1.02 4.62 29.10 0.13 -0.89 16 22 C 0.06 1.76 6.02 43.10 0.26 2.02 16 23 C -0.28 -6.30 10.72 21.99 0.24 -6.06 16 24 C 0.05 1.06 11.49 83.54 0.96 2.02 16 25 N -0.39 -10.15 4.01 -369.56 -1.48 -11.63 16 26 C 0.09 1.62 11.47 127.77 1.47 3.08 16 27 N -0.33 -11.29 11.92 -47.39 -0.56 -11.86 16 28 C 0.13 5.04 5.44 86.22 0.47 5.51 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 2.19 6.40 -2.39 -0.02 2.17 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.37 22.12 7.61 -92.71 -0.71 21.41 16 33 H 0.25 16.07 8.31 -92.70 -0.77 15.30 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.59 6.36 -2.39 -0.02 1.57 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 1.08 5.93 -2.39 -0.01 1.06 16 40 H 0.15 2.04 7.69 -2.39 -0.02 2.02 16 41 H 0.13 2.18 7.93 -2.39 -0.02 2.16 16 42 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 43 H 0.22 2.08 8.06 -2.91 -0.02 2.05 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.04 2.16 6.50 -2.39 -0.02 2.14 16 48 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -94.15 384.40 3.69 -90.46 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.24 Total: 33.28 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 7.13 Total: 3.67 kcal Atomic # 7 Polarization: -144.36 SS G_CDS: -5.67 Total: -150.03 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.05 Total: -28.65 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.26 kcal Total: -94.15 3.69 -90.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753794555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.934 kcal (2) G-P(sol) polarization free energy of solvation -94.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds