Wall clock time and date at job start Tue Mar 31 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.53001 * 109.46915 * 119.99638 * 2 1 3 5 5 N 1.46495 * 109.47294 * 185.37832 * 4 2 1 6 6 C 1.46494 * 120.00129 * 267.38672 * 5 4 2 7 7 C 1.36946 * 119.99957 * 87.38210 * 5 4 2 8 8 H 1.07999 * 119.99704 * 5.52150 * 7 5 4 9 9 C 1.38810 * 120.00022 * 185.52162 * 7 5 4 10 10 N 1.31623 * 120.00060 * 10.88602 * 9 7 5 11 11 Si 1.86797 * 119.99685 * 190.89195 * 9 7 5 12 12 H 1.48493 * 109.47517 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47051 * 119.99961 * 11 9 7 14 14 H 1.48507 * 109.46981 * 239.99468 * 11 9 7 15 15 N 1.46496 * 109.47043 * 239.99355 * 2 1 3 16 16 C 1.34780 * 119.99957 * 79.22611 * 15 2 1 17 17 O 1.21283 * 119.99692 * 5.53470 * 16 15 2 18 18 C 1.50696 * 119.99926 * 185.25728 * 16 15 2 19 19 H 1.08996 * 109.71846 * 39.40097 * 18 16 15 20 20 C 1.53389 * 109.71848 * 160.01234 * 18 16 15 21 21 C 1.53018 * 109.72585 * 170.23079 * 20 18 16 22 22 C 1.53370 * 109.75432 * 288.29186 * 21 20 18 23 23 C 1.50945 * 108.20388 * 50.66316 * 22 21 20 24 24 N 1.30131 * 128.28838 * 163.23385 * 23 22 21 25 25 N 1.40309 * 108.12447 * 180.15105 * 24 23 22 26 26 C 1.46501 * 126.00217 * 179.97438 * 25 24 23 27 27 C 1.35194 * 107.99236 * 359.96528 * 25 24 23 28 28 C 1.34568 * 107.62182 * 359.95829 * 27 25 24 29 29 H 1.08997 * 109.47140 * 300.00856 * 1 2 3 30 30 H 1.09003 * 109.47077 * 60.00265 * 1 2 3 31 31 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47027 * 305.37721 * 4 2 1 33 33 H 1.08999 * 109.47108 * 65.37483 * 4 2 1 34 34 H 1.08999 * 109.46922 * 1.13593 * 6 5 4 35 35 H 1.09010 * 109.47390 * 121.13557 * 6 5 4 36 36 H 1.08994 * 109.47274 * 241.13401 * 6 5 4 37 37 H 0.96997 * 119.99786 * 179.97438 * 10 9 7 38 38 H 0.96996 * 120.00587 * 259.22491 * 15 2 1 39 39 H 1.09004 * 109.42624 * 290.31207 * 20 18 16 40 40 H 1.08999 * 109.43147 * 50.20118 * 20 18 16 41 41 H 1.08995 * 109.42771 * 48.38165 * 21 20 18 42 42 H 1.09003 * 109.42292 * 168.20958 * 21 20 18 43 43 H 1.08998 * 109.71485 * 170.34101 * 22 21 20 44 44 H 1.09002 * 109.71879 * 290.98471 * 22 21 20 45 45 H 1.08996 * 109.46980 * 89.98540 * 26 25 24 46 46 H 1.09003 * 109.46870 * 209.98109 * 26 25 24 47 47 H 1.08993 * 109.47395 * 329.97682 * 26 25 24 48 48 H 1.08006 * 126.19230 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4992 -0.6101 1.3159 6 6 4.3409 -1.6580 0.7332 7 6 4.0765 0.4734 1.9227 8 1 3.4596 1.2004 2.4299 9 6 5.4544 0.6371 1.8859 10 7 6.1862 -0.1196 1.0957 11 14 6.2700 1.9311 2.9580 12 1 5.2344 2.6438 3.7483 13 1 7.2326 1.2756 3.8795 14 1 6.9918 2.9032 2.0980 15 7 2.0183 -0.6907 -1.1961 16 6 2.0372 -0.0519 -2.3827 17 8 1.7456 1.1238 -2.4431 18 6 2.4267 -0.7969 -3.6334 19 1 2.0040 -1.8013 -3.6098 20 6 1.9077 -0.0457 -4.8660 21 6 2.5035 -0.6606 -6.1342 22 6 3.9924 -0.3060 -6.2321 23 6 4.6471 -0.6523 -4.9169 24 7 5.9147 -0.7965 -4.6604 25 7 6.0511 -1.1214 -3.3023 26 6 7.3118 -1.3697 -2.5986 27 6 4.8147 -1.1650 -2.7571 28 6 3.9302 -0.8783 -3.7299 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6001 -0.2659 2.1367 33 1 1.7573 -1.7729 1.2025 34 1 3.7088 -2.4223 0.2811 35 1 4.9870 -1.2230 -0.0294 36 1 4.9532 -2.1084 1.5143 37 1 7.1490 -0.0050 1.0698 38 1 2.3280 -1.6078 -1.1341 39 1 0.8207 -0.1185 -4.9038 40 1 2.1988 1.0026 -4.8009 41 1 2.3904 -1.7441 -6.0994 42 1 1.9798 -0.2702 -7.0068 43 1 4.4549 -0.8795 -7.0354 44 1 4.1044 0.7602 -6.4291 45 1 7.6916 -0.4324 -2.1921 46 1 7.1413 -2.0756 -1.7858 47 1 8.0404 -1.7858 -3.2943 48 1 4.5794 -1.3891 -1.7271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324791.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:24 Heat of formation + Delta-G solvation = 58.669822 kcal Electronic energy + Delta-G solvation = -29070.500292 eV Core-core repulsion = 25355.680048 eV Total energy + Delta-G solvation = -3714.820244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27530 -39.24448 -36.80889 -35.91816 -34.13324 -32.52806 -31.93571 -31.03726 -29.88886 -28.41571 -26.87081 -26.27341 -25.70944 -23.83758 -22.05644 -21.49458 -21.04957 -20.05810 -19.61519 -18.55975 -16.94244 -16.76091 -16.28098 -15.50491 -15.18781 -15.00506 -14.70412 -14.58395 -14.11554 -13.72789 -13.59378 -13.39226 -13.07962 -13.00695 -12.63145 -12.52892 -12.42042 -12.20212 -12.12070 -11.92552 -11.55122 -11.38179 -11.15748 -11.04714 -10.90119 -10.81982 -10.80550 -10.71752 -10.59015 -10.19290 -10.18750 -9.97238 -9.82973 -9.28305 -8.88965 -8.69015 -8.41765 -7.95107 -6.96507 -5.69664 -3.14781 2.26834 2.81269 2.96324 3.28369 3.35601 3.43508 3.44226 3.78896 4.45798 4.54301 4.92704 4.99436 5.04050 5.25042 5.29504 5.37394 5.42969 5.49162 5.55678 5.57340 5.62074 5.65315 5.69150 5.83425 5.85124 5.89654 5.91824 5.96424 6.02514 6.04933 6.11688 6.21220 6.35958 6.38996 6.42822 6.47720 6.51068 6.54196 6.85570 6.95008 7.16258 7.35487 7.37304 7.65565 7.77455 8.05309 8.08888 8.30536 8.81278 9.19389 9.81631 10.22747 11.26774 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.005512 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.136499 B = 5078.818875 C = 6686.999969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.115 3.885 3 H 0.085 0.915 4 C 0.145 3.855 5 N -0.605 5.605 6 C 0.155 3.845 7 C -0.239 4.239 8 H 0.074 0.926 9 C -0.004 4.004 10 N -0.918 5.918 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.293 1.293 15 N -0.708 5.708 16 C 0.523 3.477 17 O -0.544 6.544 18 C -0.021 4.021 19 H 0.089 0.911 20 C -0.100 4.100 21 C -0.112 4.112 22 C -0.036 4.036 23 C 0.082 3.918 24 N -0.301 5.301 25 N -0.371 5.371 26 C 0.109 3.891 27 C 0.085 3.915 28 C -0.247 4.247 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.044 0.956 34 H -0.011 1.011 35 H 0.076 0.924 36 H 0.019 0.981 37 H 0.247 0.753 38 H 0.392 0.608 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -6.715 -10.461 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.103 0.897 4 C 0.017 3.983 5 N -0.328 5.328 6 C 0.011 3.989 7 C -0.368 4.368 8 H 0.092 0.908 9 C -0.200 4.200 10 N -0.566 5.566 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.220 1.220 15 N -0.358 5.358 16 C 0.308 3.692 17 O -0.422 6.422 18 C -0.044 4.044 19 H 0.107 0.893 20 C -0.138 4.138 21 C -0.150 4.150 22 C -0.075 4.075 23 C -0.086 4.086 24 N -0.123 5.123 25 N -0.152 5.152 26 C -0.033 4.033 27 C -0.061 4.061 28 C -0.259 4.259 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.007 0.993 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.226 0.774 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.064 -5.874 -10.842 13.331 hybrid contribution 0.101 0.275 1.247 1.281 sum -4.963 -5.599 -9.595 12.167 Atomic orbital electron populations 1.22124 0.96746 1.01080 1.01774 1.21902 0.91943 0.99186 0.86200 0.89681 1.21104 0.85597 0.97188 0.94440 1.44013 0.99054 1.22826 1.66866 1.21325 0.91766 0.87727 0.98093 1.19338 0.90420 1.01049 1.25960 0.90776 1.24738 0.96466 0.99150 0.99631 1.70049 1.04674 1.41989 1.39912 0.86119 0.79351 0.80826 0.79902 1.20537 1.21787 1.21997 1.45976 1.65227 1.16716 1.07929 1.20433 0.76589 0.87386 0.84778 1.90637 1.49212 1.15730 1.86579 1.19634 0.91547 0.99476 0.93722 0.89337 1.21402 0.99663 1.00819 0.91904 1.21545 0.94366 1.01186 0.97896 1.20081 0.94338 1.01844 0.91218 1.22163 0.90511 0.99540 0.96424 1.76927 1.18310 1.23479 0.93568 1.48421 1.06263 1.54114 1.06354 1.21844 0.82248 1.03213 0.95949 1.22583 0.84429 0.99098 0.99960 1.19445 0.94541 1.18173 0.93718 0.92129 0.92864 0.93188 0.92273 0.93764 0.99296 0.90643 0.96208 0.94252 0.77410 0.91505 0.90270 0.91584 0.90998 0.90347 0.90064 0.90450 0.88872 0.90225 0.79905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.40 37.16 0.35 -1.96 16 2 C 0.12 2.05 2.78 -67.93 -0.19 1.86 16 3 H 0.09 1.88 7.69 -51.93 -0.40 1.49 16 4 C 0.15 2.67 5.12 -4.04 -0.02 2.65 16 5 N -0.61 -13.80 2.88 -181.12 -0.52 -14.32 16 6 C 0.15 3.38 7.79 59.84 0.47 3.85 16 7 C -0.24 -6.21 9.81 -15.06 -0.15 -6.36 16 8 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 9 C 0.00 -0.11 5.38 -17.43 -0.09 -0.20 16 10 N -0.92 -24.39 9.70 55.49 0.54 -23.86 16 11 Si 0.91 21.68 29.57 -169.99 -5.03 16.66 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 N -0.71 -11.88 4.65 -53.81 -0.25 -12.13 16 16 C 0.52 9.35 6.51 -10.99 -0.07 9.27 16 17 O -0.54 -11.76 15.45 5.55 0.09 -11.67 16 18 C -0.02 -0.31 2.89 -92.64 -0.27 -0.58 16 19 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 20 C -0.10 -1.31 4.85 -26.52 -0.13 -1.44 16 21 C -0.11 -1.17 5.86 -26.53 -0.16 -1.33 16 22 C -0.04 -0.44 6.31 -27.57 -0.17 -0.61 16 23 C 0.08 1.33 7.10 -82.34 -0.58 0.75 16 24 N -0.30 -5.40 12.56 33.75 0.42 -4.98 16 25 N -0.37 -6.54 4.02 -68.30 -0.27 -6.82 16 26 C 0.11 1.60 11.47 59.85 0.69 2.28 16 27 C 0.09 1.53 10.99 -17.37 -0.19 1.34 16 28 C -0.25 -4.13 5.41 -104.98 -0.57 -4.70 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.83 7.99 -51.93 -0.41 0.42 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.07 8.06 -51.92 -0.42 0.65 16 33 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 34 H -0.01 -0.21 6.92 -51.93 -0.36 -0.57 16 35 H 0.08 1.77 4.27 -51.92 -0.22 1.55 16 36 H 0.02 0.47 7.79 -51.93 -0.40 0.07 16 37 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 38 H 0.39 5.95 7.10 -40.82 -0.29 5.66 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.23 7.50 -51.93 -0.39 0.84 16 41 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.18 3.39 4.76 -52.48 -0.25 3.14 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -31.65 377.47 -8.18 -39.83 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.75 Total: 6.79 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.09 Total: 4.81 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.08 Total: -62.11 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.65 -8.18 -39.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324791.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.498 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds