Wall clock time and date at job start Tue Mar 31 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48494 * 109.47376 * 239.99659 * 3 2 1 5 5 H 1.48496 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 119.99668 * 3 2 1 7 7 C 1.38948 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.39045 * 119.99661 * 179.97438 * 13 12 10 15 15 C 1.39221 * 119.93484 * 359.72957 * 14 13 12 16 16 C 1.37611 * 120.07017 * 179.72246 * 15 14 13 17 17 C 1.39793 * 119.92886 * 0.57165 * 16 15 14 18 18 C 1.47513 * 120.06901 * 179.68157 * 17 16 15 19 19 O 1.21593 * 120.00074 * 180.02562 * 18 17 16 20 20 N 1.34777 * 120.00040 * 0.02562 * 18 17 16 21 21 C 1.46499 * 120.00097 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47169 * 180.02562 * 21 20 18 23 23 O 1.20827 * 119.99627 * 359.97438 * 22 21 20 24 24 O 1.34231 * 120.00172 * 180.02562 * 22 21 20 25 25 C 1.39798 * 119.86454 * 359.70271 * 17 16 15 26 26 C 1.37618 * 119.92877 * 359.97438 * 25 17 16 27 27 H 0.97002 * 120.00016 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 30 30 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 31 31 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 32 32 H 1.08002 * 119.96127 * 359.97438 * 15 14 13 33 33 H 1.07995 * 120.03441 * 180.27548 * 16 15 14 34 34 H 0.97000 * 120.00105 * 0.02562 * 20 18 17 35 35 H 1.09001 * 109.47532 * 300.00249 * 21 20 18 36 36 H 1.09005 * 109.46940 * 60.00314 * 21 20 18 37 37 H 0.96699 * 116.99835 * 180.02562 * 24 22 21 38 38 H 1.07994 * 120.03605 * 179.97438 * 25 17 16 39 39 H 1.07995 * 119.96388 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7324 -7.2873 0.0038 15 6 0.3633 -7.5401 0.0101 16 6 -0.0985 -8.8364 0.0055 17 6 0.8087 -9.9000 0.0065 18 6 0.3170 -11.2908 0.0086 19 8 1.1071 -12.2150 0.0099 20 7 -1.0081 -11.5371 0.0091 21 6 -1.4964 -12.9183 0.0106 22 6 -3.0034 -12.9184 0.0102 23 8 -3.6075 -11.8720 0.0093 24 8 -3.6746 -14.0809 0.0120 25 6 2.1828 -9.6430 0.0059 26 6 2.6384 -8.3444 0.0038 27 1 -0.4850 0.8401 -0.0004 28 1 0.3535 -2.3906 0.0005 29 1 0.6175 -4.9212 -0.8880 30 1 0.6169 -4.9201 0.8920 31 1 3.1495 -5.7992 0.0030 32 1 -0.3370 -6.7179 0.0146 33 1 -1.1606 -9.0318 0.0059 34 1 -1.6385 -10.7999 0.0077 35 1 -1.1332 -13.4332 -0.8788 36 1 -1.1329 -13.4312 0.9012 37 1 -4.6403 -14.0302 0.0113 38 1 2.8861 -10.4625 0.0071 39 1 3.6998 -8.1451 0.0038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:11 Heat of formation + Delta-G solvation = -134.183922 kcal Electronic energy + Delta-G solvation = -24824.491769 eV Core-core repulsion = 20731.923908 eV Total energy + Delta-G solvation = -4092.567861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01827 -40.10725 -39.03294 -38.15003 -36.81473 -35.17693 -34.89203 -34.04512 -31.52159 -31.16205 -30.26289 -28.72511 -26.85521 -24.62547 -23.21938 -22.68307 -21.72553 -20.61793 -19.51630 -18.80667 -18.41913 -18.16109 -17.48680 -16.78968 -16.55298 -16.14136 -15.54167 -15.45174 -15.18461 -14.92562 -14.91570 -14.54127 -14.06019 -13.84986 -13.47569 -13.47059 -13.46208 -13.19399 -13.01231 -12.43447 -12.27465 -12.14999 -12.03731 -11.67657 -11.26415 -11.16738 -10.95475 -10.55983 -10.37500 -10.16209 -10.09782 -9.69441 -9.55992 -9.03203 -8.72680 -8.18267 -7.39195 -6.58869 -4.01050 1.04041 1.45025 1.55564 2.12888 2.83292 3.03751 3.08746 3.17359 3.20349 3.46214 3.64376 3.94288 4.06122 4.49843 4.68324 4.72859 4.75563 4.78177 4.94218 4.95121 5.08751 5.31996 5.46658 5.53135 5.67132 5.75394 5.86374 5.91240 5.94494 6.02732 6.22371 6.30376 6.39919 6.75551 7.16184 7.26244 7.31826 7.39161 7.81471 7.89172 7.99233 8.36886 8.97342 9.30330 9.78268 10.57784 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.001915 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.174688 B =14619.353203 C =15779.080025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.426 3.574 11 O -0.595 6.595 12 C 0.107 3.893 13 N -0.710 5.710 14 C 0.261 3.739 15 C -0.215 4.215 16 C -0.028 4.028 17 C -0.222 4.222 18 C 0.577 3.423 19 O -0.547 6.547 20 N -0.730 5.730 21 C 0.129 3.871 22 C 0.478 3.522 23 O -0.510 6.510 24 O -0.510 6.510 25 C -0.001 4.001 26 C -0.213 4.213 27 H 0.275 0.725 28 H 0.395 0.605 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.414 0.586 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.411 0.589 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.417 0.583 38 H 0.133 0.867 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 -23.124 0.015 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.212 3.788 11 O -0.481 6.481 12 C -0.022 4.022 13 N -0.337 5.337 14 C 0.151 3.849 15 C -0.238 4.238 16 C -0.048 4.048 17 C -0.227 4.227 18 C 0.368 3.632 19 O -0.425 6.425 20 N -0.388 5.388 21 C 0.004 3.996 22 C 0.319 3.681 23 O -0.398 6.398 24 O -0.322 6.322 25 C -0.021 4.021 26 C -0.236 4.236 27 H 0.085 0.915 28 H 0.229 0.771 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.254 0.746 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.250 0.750 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.277 0.723 38 H 0.150 0.850 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.359 -23.125 0.017 23.983 hybrid contribution -1.034 1.390 -0.003 1.732 sum -7.393 -21.735 0.014 22.958 Atomic orbital electron populations 1.69597 1.06011 1.28731 1.49126 1.25328 0.95689 0.99977 0.96640 0.85859 0.78797 0.80044 0.79219 1.19733 1.20800 1.19738 1.19685 0.93469 0.81984 1.48462 0.87717 1.41786 1.09409 1.04488 1.62582 1.19678 0.88338 0.84904 0.85905 1.90515 1.13731 1.86699 1.57189 1.21064 0.92184 0.86517 1.02387 1.44621 1.10284 1.01415 1.77370 1.18132 0.93015 0.84714 0.89071 1.20612 0.93624 0.97274 1.12313 1.20957 0.98453 0.91807 0.93554 1.19279 0.94485 0.91213 1.17732 1.18209 0.80772 0.89366 0.74850 1.90765 1.55208 1.45976 1.50600 1.45698 1.08172 1.07239 1.77672 1.20536 0.85996 0.86495 1.06566 1.23306 0.91689 0.81318 0.71744 1.90756 1.70222 1.33242 1.45593 1.84483 1.27254 1.35118 1.85347 1.20864 0.93928 0.96137 0.91205 1.20562 0.99262 0.91323 1.12440 0.91474 0.77097 0.90168 0.90166 0.74635 0.85247 0.86035 0.74979 0.86870 0.86856 0.72318 0.84954 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.17 13.05 55.50 0.72 -22.45 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.15 29.55 -169.99 -5.02 15.13 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.31 -8.13 9.68 -14.93 -0.14 -8.28 16 8 H 0.11 2.91 7.16 -52.48 -0.38 2.53 16 9 N -0.55 -13.00 5.29 -10.96 -0.06 -13.06 16 10 C 0.43 9.31 7.85 -10.99 -0.09 9.22 16 11 O -0.59 -14.97 15.24 5.54 0.08 -14.89 16 12 C 0.11 1.71 5.38 -5.19 -0.03 1.68 16 13 N -0.71 -10.82 5.68 -59.81 -0.34 -11.16 16 14 C 0.26 3.52 6.65 -83.86 -0.56 2.96 16 15 C -0.22 -2.61 9.28 -39.45 -0.37 -2.98 16 16 C -0.03 -0.31 9.53 -39.23 -0.37 -0.68 16 17 C -0.22 -2.64 5.88 -104.95 -0.62 -3.26 16 18 C 0.58 6.81 7.76 -12.48 -0.10 6.71 16 19 O -0.55 -7.87 16.34 5.28 0.09 -7.78 16 20 N -0.73 -6.59 5.48 -62.53 -0.34 -6.94 16 21 C 0.13 0.88 6.27 -5.19 -0.03 0.85 16 22 C 0.48 3.18 8.40 36.01 0.30 3.48 16 23 O -0.51 -4.88 16.43 -18.75 -0.31 -5.19 16 24 O -0.51 -2.18 13.42 -39.26 -0.53 -2.70 16 25 C 0.00 -0.02 9.58 -39.22 -0.38 -0.39 16 26 C -0.21 -2.66 9.87 -39.44 -0.39 -3.05 16 27 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.40 8.87 7.90 -40.82 -0.32 8.54 16 29 H 0.08 1.15 7.95 -51.93 -0.41 0.74 16 30 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 31 H 0.41 6.76 7.44 -40.82 -0.30 6.46 16 32 H 0.13 1.43 6.70 -52.49 -0.35 1.08 16 33 H 0.12 1.02 6.39 -52.49 -0.34 0.69 16 34 H 0.41 3.47 5.46 -40.82 -0.22 3.24 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.42 0.13 9.10 45.56 0.41 0.54 16 38 H 0.13 1.53 7.64 -52.49 -0.40 1.13 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -33.29 349.71 -6.42 -39.71 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -3.12 Total: 17.20 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -2.86 Total: 6.87 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.02 Total: -53.60 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.66 Total: -30.57 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.29 -6.42 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.479 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds