Wall clock time and date at job start Tue Mar 31 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48494 * 109.47376 * 239.99659 * 3 2 1 5 5 H 1.48496 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 119.99668 * 3 2 1 7 7 C 1.38948 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.39045 * 119.99661 * 179.97438 * 13 12 10 15 15 C 1.39221 * 119.93484 * 359.72957 * 14 13 12 16 16 C 1.37611 * 120.07017 * 179.72246 * 15 14 13 17 17 C 1.39793 * 119.92886 * 0.57165 * 16 15 14 18 18 C 1.47513 * 120.06901 * 179.68157 * 17 16 15 19 19 O 1.21593 * 120.00074 * 180.02562 * 18 17 16 20 20 N 1.34777 * 120.00040 * 0.02562 * 18 17 16 21 21 C 1.46499 * 120.00097 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47169 * 180.02562 * 21 20 18 23 23 O 1.20827 * 119.99627 * 359.97438 * 22 21 20 24 24 O 1.34231 * 120.00172 * 180.02562 * 22 21 20 25 25 C 1.39798 * 119.86454 * 359.70271 * 17 16 15 26 26 C 1.37618 * 119.92877 * 359.97438 * 25 17 16 27 27 H 0.97002 * 120.00016 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 30 30 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 31 31 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 32 32 H 1.08002 * 119.96127 * 359.97438 * 15 14 13 33 33 H 1.07995 * 120.03441 * 180.27548 * 16 15 14 34 34 H 0.97000 * 120.00105 * 0.02562 * 20 18 17 35 35 H 1.09001 * 109.47532 * 300.00249 * 21 20 18 36 36 H 1.09005 * 109.46940 * 60.00314 * 21 20 18 37 37 H 0.96699 * 116.99835 * 180.02562 * 24 22 21 38 38 H 1.07994 * 120.03605 * 179.97438 * 25 17 16 39 39 H 1.07995 * 119.96388 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7324 -7.2873 0.0038 15 6 0.3633 -7.5401 0.0101 16 6 -0.0985 -8.8364 0.0055 17 6 0.8087 -9.9000 0.0065 18 6 0.3170 -11.2908 0.0086 19 8 1.1071 -12.2150 0.0099 20 7 -1.0081 -11.5371 0.0091 21 6 -1.4964 -12.9183 0.0106 22 6 -3.0034 -12.9184 0.0102 23 8 -3.6075 -11.8720 0.0093 24 8 -3.6746 -14.0809 0.0120 25 6 2.1828 -9.6430 0.0059 26 6 2.6384 -8.3444 0.0038 27 1 -0.4850 0.8401 -0.0004 28 1 0.3535 -2.3906 0.0005 29 1 0.6175 -4.9212 -0.8880 30 1 0.6169 -4.9201 0.8920 31 1 3.1495 -5.7992 0.0030 32 1 -0.3370 -6.7179 0.0146 33 1 -1.1606 -9.0318 0.0059 34 1 -1.6385 -10.7999 0.0077 35 1 -1.1332 -13.4332 -0.8788 36 1 -1.1329 -13.4312 0.9012 37 1 -4.6403 -14.0302 0.0113 38 1 2.8861 -10.4625 0.0071 39 1 3.6998 -8.1451 0.0038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:09 Heat of formation + Delta-G solvation = -160.552031 kcal Electronic energy + Delta-G solvation = -24825.635176 eV Core-core repulsion = 20731.923908 eV Total energy + Delta-G solvation = -4093.711268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.120 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.64638 -40.97623 -40.39487 -39.44670 -37.30099 -36.48707 -35.80049 -35.66327 -33.39039 -32.13540 -31.27148 -29.62066 -28.11892 -26.30049 -24.13078 -23.57718 -22.47234 -21.50645 -21.12876 -20.02600 -19.51866 -19.06022 -18.66747 -17.40063 -17.33885 -17.20978 -16.82221 -16.70925 -16.38662 -16.23817 -15.94879 -15.70681 -15.60548 -14.88158 -14.64596 -14.54883 -14.28834 -13.98794 -13.88876 -13.81517 -13.57294 -13.32063 -13.26060 -12.90996 -12.62961 -12.48101 -12.14641 -11.89449 -11.81894 -11.57815 -11.15476 -11.12270 -10.55144 -10.32338 -10.09990 -9.95692 -8.52063 -8.44946 -6.01660 0.08524 0.51773 1.05015 1.37173 1.42129 1.52153 1.58899 1.88989 1.93211 2.17250 2.38055 2.40907 2.99926 3.14831 3.15555 3.81607 3.87189 4.03394 4.16722 4.18061 4.24836 4.35990 4.39456 4.43464 4.47863 4.53922 4.70412 5.05563 5.19074 5.26017 5.35730 5.37253 5.46457 5.51761 5.77634 5.90627 6.25990 6.39924 6.49813 6.66588 6.87064 7.04108 7.13145 7.44730 7.96862 8.64252 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.001915 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.174688 B =14619.353203 C =15779.080025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.008 4.008 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.339 4.339 8 H 0.082 0.918 9 N -0.559 5.559 10 C 0.428 3.572 11 O -0.631 6.631 12 C 0.123 3.877 13 N -0.721 5.721 14 C 0.245 3.755 15 C -0.218 4.218 16 C -0.021 4.021 17 C -0.225 4.225 18 C 0.578 3.422 19 O -0.577 6.577 20 N -0.720 5.720 21 C 0.124 3.876 22 C 0.490 3.510 23 O -0.542 6.542 24 O -0.503 6.503 25 C -0.009 4.009 26 C -0.216 4.216 27 H 0.280 0.720 28 H 0.401 0.599 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.407 0.593 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.415 0.585 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.435 0.565 38 H 0.135 0.865 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -24.118 0.016 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.209 4.209 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.100 0.900 9 N -0.195 5.195 10 C 0.215 3.785 11 O -0.519 6.519 12 C -0.005 4.005 13 N -0.349 5.349 14 C 0.137 3.863 15 C -0.240 4.240 16 C -0.040 4.040 17 C -0.231 4.231 18 C 0.368 3.632 19 O -0.458 6.458 20 N -0.377 5.377 21 C -0.001 4.001 22 C 0.333 3.667 23 O -0.432 6.432 24 O -0.317 6.317 25 C -0.029 4.029 26 C -0.238 4.238 27 H 0.090 0.910 28 H 0.235 0.765 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.244 0.756 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.255 0.745 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.299 0.701 38 H 0.153 0.847 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.991 -24.174 0.018 25.460 hybrid contribution -0.595 1.491 -0.003 1.605 sum -8.586 -22.683 0.016 24.254 Atomic orbital electron populations 1.69650 1.06782 1.29666 1.49205 1.26053 0.96555 1.02465 0.95839 0.84982 0.77797 0.76582 0.78973 1.19692 1.19480 1.19705 1.19647 0.92850 0.83796 1.50560 0.90027 1.41820 1.09597 1.04503 1.63540 1.20667 0.88190 0.86301 0.83329 1.90491 1.15761 1.87642 1.58027 1.20952 0.91686 0.83396 1.04497 1.44546 1.09608 1.01803 1.78930 1.18289 0.93873 0.83952 0.90159 1.20837 0.93194 0.98235 1.11778 1.21192 0.99668 0.90938 0.92241 1.19475 0.94627 0.91840 1.17127 1.18171 0.81401 0.88912 0.74682 1.90752 1.56123 1.46664 1.52265 1.45605 1.07294 1.08535 1.76250 1.20706 0.86428 0.85302 1.07626 1.23122 0.91470 0.81279 0.70827 1.90751 1.70778 1.34375 1.47341 1.84443 1.28927 1.33734 1.84587 1.20964 0.94459 0.96064 0.91420 1.20671 0.99687 0.91307 1.12172 0.91043 0.76480 0.87906 0.87898 0.75557 0.83869 0.83353 0.74485 0.85823 0.85811 0.70147 0.84719 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.95 13.05 21.66 0.28 -46.67 16 2 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 3 Si 0.99 41.15 29.55 68.60 2.03 43.18 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.34 -18.32 9.68 84.04 0.81 -17.50 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.56 -26.75 5.29 -306.98 -1.62 -28.37 16 10 C 0.43 18.75 7.85 87.66 0.69 19.43 16 11 O -0.63 -32.43 15.24 -3.08 -0.05 -32.48 16 12 C 0.12 3.76 5.38 85.63 0.46 4.22 16 13 N -0.72 -21.44 5.68 -343.13 -1.95 -23.39 16 14 C 0.25 6.32 6.65 38.47 0.26 6.58 16 15 C -0.22 -4.79 9.28 22.36 0.21 -4.58 16 16 C -0.02 -0.41 9.53 22.50 0.21 -0.19 16 17 C -0.23 -5.03 5.88 -20.08 -0.12 -5.15 16 18 C 0.58 12.80 7.76 86.69 0.67 13.47 16 19 O -0.58 -16.06 16.34 -4.01 -0.07 -16.13 16 20 N -0.72 -11.63 5.48 -470.01 -2.57 -14.20 16 21 C 0.12 1.44 6.27 85.63 0.54 1.98 16 22 C 0.49 5.49 8.40 71.24 0.60 6.09 16 23 O -0.54 -9.38 16.43 21.96 0.36 -9.02 16 24 O -0.50 -3.05 13.42 -51.43 -0.69 -3.74 16 25 C -0.01 -0.22 9.58 22.50 0.22 0.00 16 26 C -0.22 -5.26 9.87 22.36 0.22 -5.04 16 27 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 28 H 0.40 17.96 7.90 -92.71 -0.73 17.23 16 29 H 0.10 2.72 7.95 -2.38 -0.02 2.70 16 30 H 0.10 2.72 7.92 -2.39 -0.02 2.70 16 31 H 0.41 13.37 7.44 -92.71 -0.69 12.68 16 32 H 0.14 2.72 6.70 -2.91 -0.02 2.70 16 33 H 0.15 2.02 6.39 -2.91 -0.02 2.01 16 34 H 0.42 6.06 5.46 -92.71 -0.51 5.56 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.44 -0.83 9.10 -74.06 -0.67 -1.50 16 38 H 0.13 3.07 7.64 -2.91 -0.02 3.05 16 39 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -71.78 349.71 -0.48 -72.25 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: -1.43 Total: 39.20 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 5.23 Total: 19.37 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -5.86 Total: -112.62 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -0.44 Total: -61.37 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -71.78 -0.48 -72.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.299 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds