Wall clock time and date at job start Tue Mar 31 2020 04:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48501 * 109.47026 * 239.99881 * 3 2 1 5 5 H 1.48502 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47364 * 119.99954 * 3 2 1 7 7 C 1.37876 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00270 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47647 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47175 * 180.02562 * 10 9 7 12 12 O 1.42093 * 110.54736 * 68.37509 * 11 10 9 13 13 O 1.42097 * 110.54191 * 291.61992 * 11 10 9 14 14 N 1.65602 * 104.44839 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00325 * 64.99500 * 14 11 10 16 16 C 1.52999 * 109.47225 * 164.99896 * 15 14 11 17 17 C 1.52999 * 109.47137 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47174 * 180.02562 * 17 16 15 19 19 C 1.42906 * 113.99824 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.46752 * 180.02562 * 19 18 17 21 21 H 1.08989 * 110.80340 * 305.69687 * 20 19 18 22 22 C 1.54817 * 110.90505 * 182.06881 * 20 19 18 23 23 C 1.54093 * 104.18741 * 220.92156 * 22 20 19 24 24 O 1.43740 * 107.29614 * 357.96885 * 23 22 20 25 25 C 1.44430 * 107.00047 * 26.48957 * 24 23 22 26 26 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46827 * 59.99859 * 9 7 2 28 28 H 1.08999 * 109.47113 * 300.00266 * 9 7 2 29 29 H 1.08993 * 109.47200 * 60.00030 * 10 9 7 30 30 H 1.09003 * 109.46879 * 299.99808 * 10 9 7 31 31 H 0.97005 * 119.99680 * 245.00069 * 14 11 10 32 32 H 1.09008 * 109.47086 * 45.00440 * 15 14 11 33 33 H 1.09002 * 109.47537 * 285.00612 * 15 14 11 34 34 H 1.08995 * 109.46919 * 60.00469 * 16 15 14 35 35 H 1.08998 * 109.47566 * 300.00286 * 16 15 14 36 36 H 1.09008 * 109.47150 * 60.00558 * 17 16 15 37 37 H 1.09002 * 109.47561 * 300.00677 * 17 16 15 38 38 H 1.08993 * 109.47732 * 60.00254 * 19 18 17 39 39 H 1.09000 * 109.47141 * 299.99893 * 19 18 17 40 40 H 1.09001 * 110.48477 * 339.60241 * 22 20 19 41 41 H 1.08999 * 110.48129 * 102.11092 * 22 20 19 42 42 H 1.08999 * 109.88166 * 117.39400 * 23 22 20 43 43 H 1.09001 * 109.87621 * 238.54850 * 23 22 20 44 44 H 1.08994 * 110.65332 * 201.47516 * 25 24 23 45 45 H 1.09000 * 110.59420 * 78.46784 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 16 1.3383 -5.2330 0.0011 12 8 0.6657 -5.4199 -1.2365 13 8 0.6631 -5.4195 1.2373 14 7 2.5205 -6.3926 0.0033 15 6 3.4173 -6.5224 1.1544 16 6 4.1484 -7.8645 1.0827 17 6 5.0845 -8.0002 2.2853 18 8 5.7677 -9.2534 2.2180 19 6 6.6717 -9.4815 3.3011 20 6 7.3436 -10.8449 3.1261 21 1 6.5982 -11.6321 3.0131 22 6 8.2931 -11.1490 4.3105 23 6 9.5285 -11.7899 3.6492 24 8 9.2613 -11.8781 2.2396 25 6 8.3194 -10.8302 1.9221 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8727 -3.6047 -0.8878 31 1 2.6193 -6.9860 -0.7578 32 1 2.8358 -6.4742 2.0752 33 1 4.1450 -5.7110 1.1414 34 1 4.7298 -7.9127 0.1620 35 1 3.4207 -8.6759 1.0958 36 1 4.5027 -7.9522 3.2059 37 1 5.8122 -7.1888 2.2728 38 1 6.1226 -9.4648 4.2424 39 1 7.4322 -8.7006 3.3102 40 1 8.5696 -10.2280 4.8238 41 1 7.8249 -11.8461 5.0054 42 1 10.4063 -11.1672 3.8218 43 1 9.6925 -12.7868 4.0584 44 1 7.7904 -11.0565 0.9963 45 1 8.8262 -9.8679 1.8504 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077399440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:44 Heat of formation + Delta-G solvation = -188.170489 kcal Electronic energy + Delta-G solvation = -24275.466593 eV Core-core repulsion = 20419.541994 eV Total energy + Delta-G solvation = -3855.924600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98937 -38.31906 -36.65351 -36.01265 -35.42396 -33.90647 -33.46302 -31.34575 -31.17613 -29.82089 -26.24298 -25.61566 -24.82422 -22.93597 -22.13428 -21.61254 -20.95754 -18.92125 -17.54519 -17.44110 -16.88561 -16.52779 -16.39428 -16.35949 -15.79180 -15.62855 -15.37719 -14.83329 -14.69522 -14.57220 -14.21866 -13.91436 -13.42122 -13.22055 -12.86630 -12.54529 -12.39451 -12.14205 -11.91502 -11.81814 -11.72455 -11.61415 -11.55856 -11.43061 -11.25793 -11.15748 -11.11036 -11.08219 -10.98105 -10.45476 -10.38973 -10.14379 -9.97766 -9.81127 -9.52136 -9.04845 -8.51538 -6.13751 -4.19520 0.77712 2.95280 3.24003 3.25673 3.30749 3.32370 3.56255 4.02809 4.22699 4.24943 4.36450 4.40866 4.57250 4.64665 4.69492 4.71153 4.76399 4.80848 4.92513 5.03225 5.08115 5.16634 5.19942 5.21292 5.22986 5.31090 5.37110 5.38853 5.47090 5.51911 5.64567 5.66138 5.76875 5.83857 6.03914 6.39804 6.47158 6.78043 7.06474 7.28733 7.35099 7.78744 8.16033 8.83570 9.45186 10.97140 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.001923 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.691016 B =14557.618868 C =15571.450069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.595 3.405 12 O -0.967 6.967 13 O -0.967 6.967 14 N -1.128 6.128 15 C 0.118 3.882 16 C -0.124 4.124 17 C 0.063 3.937 18 O -0.387 6.387 19 C 0.072 3.928 20 C -0.121 4.121 21 H 0.095 0.905 22 C -0.151 4.151 23 C 0.047 3.953 24 O -0.381 6.381 25 C 0.056 3.944 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.413 0.587 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.177 -21.324 7.849 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.693 3.307 12 O -0.957 6.957 13 O -0.957 6.957 14 N -0.885 5.885 15 C -0.009 4.009 16 C -0.163 4.163 17 C -0.015 4.015 18 O -0.307 6.307 19 C -0.004 4.004 20 C -0.140 4.140 21 H 0.113 0.887 22 C -0.188 4.188 23 C -0.030 4.030 24 O -0.300 6.300 25 C -0.021 4.021 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.246 0.754 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.117 0.883 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.114 -21.581 7.731 28.021 hybrid contribution 1.088 1.393 0.120 1.772 sum 17.203 -20.188 7.851 27.661 Atomic orbital electron populations 1.69943 1.06101 1.27310 1.49416 1.25068 0.94981 0.99532 0.94907 0.86526 0.79483 0.82545 0.78668 1.20101 1.21077 1.20112 1.20963 0.93005 0.89810 1.52328 0.92124 1.18963 0.92713 0.90554 0.98935 1.30440 1.13709 1.18109 1.10016 1.05480 0.74598 0.76546 0.74093 1.93555 1.71635 1.85326 1.45199 1.93536 1.71364 1.84991 1.45827 1.55780 1.53084 1.52394 1.27242 1.21111 0.93049 0.97420 0.89312 1.21653 0.98459 0.97653 0.98531 1.22447 0.94740 0.85634 0.98631 1.87852 1.58143 1.37817 1.46852 1.22425 0.92148 0.95759 0.90103 1.22723 0.97949 0.97728 0.95611 0.88657 1.22941 0.95858 1.02001 0.98042 1.23143 0.96774 1.01325 0.81771 1.88898 1.64085 1.53479 1.23491 1.23612 0.88883 0.91202 0.98390 0.92468 0.94793 0.94799 0.86380 0.86096 0.75387 0.90034 0.91529 0.90297 0.90188 0.92667 0.92731 0.92707 0.92900 0.90304 0.89975 0.92262 0.89755 0.88328 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.69 4.98 -27.89 -0.14 0.55 16 10 C -0.59 -10.83 6.01 37.15 0.22 -10.61 16 11 S 2.60 44.47 5.46 -107.50 -0.59 43.88 16 12 O -0.97 -19.62 18.08 -57.54 -1.04 -20.66 16 13 O -0.97 -19.46 17.49 -57.54 -1.01 -20.47 16 14 N -1.13 -13.59 5.88 -10.61 -0.06 -13.65 16 15 C 0.12 1.18 6.13 -4.04 -0.02 1.15 16 16 C -0.12 -1.03 5.73 -26.73 -0.15 -1.19 16 17 C 0.06 0.48 5.94 37.16 0.22 0.70 16 18 O -0.39 -3.32 10.25 -35.23 -0.36 -3.69 16 19 C 0.07 0.47 5.27 37.16 0.20 0.66 16 20 C -0.12 -0.77 3.39 -88.61 -0.30 -1.07 16 21 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 22 C -0.15 -0.72 6.60 -25.20 -0.17 -0.89 16 23 C 0.05 0.28 7.70 37.73 0.29 0.57 16 24 O -0.38 -3.43 11.52 -35.23 -0.41 -3.83 16 25 C 0.06 0.41 7.09 38.21 0.27 0.68 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.12 1.91 8.14 -51.93 -0.42 1.48 16 30 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.41 4.18 8.62 -34.47 -0.30 3.89 16 32 H 0.08 0.86 7.69 -51.92 -0.40 0.46 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 0.30 8.05 -51.93 -0.42 -0.12 16 40 H 0.08 0.30 7.86 -51.93 -0.41 -0.11 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.42 7.98 -51.93 -0.41 0.01 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -35.79 384.61 -9.76 -45.56 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.82 Total: -0.92 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 0.01 Total: -22.47 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.67 Total: -39.18 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -2.81 Total: -48.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 44.47 SS G_CDS: -0.59 Total: 43.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.79 -9.76 -45.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077399440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.613 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds