Wall clock time and date at job start Tue Mar 31 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48501 * 109.47026 * 239.99881 * 3 2 1 5 5 H 1.48502 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47364 * 119.99954 * 3 2 1 7 7 C 1.37876 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00270 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47647 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47175 * 180.02562 * 10 9 7 12 12 O 1.42093 * 110.54736 * 68.37509 * 11 10 9 13 13 O 1.42097 * 110.54191 * 291.61992 * 11 10 9 14 14 N 1.65602 * 104.44839 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00325 * 64.99500 * 14 11 10 16 16 C 1.52999 * 109.47225 * 164.99896 * 15 14 11 17 17 C 1.52999 * 109.47137 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47174 * 180.02562 * 17 16 15 19 19 C 1.42906 * 113.99824 * 180.02562 * 18 17 16 20 20 C 1.53006 * 109.46752 * 180.02562 * 19 18 17 21 21 H 1.08989 * 110.80340 * 305.69687 * 20 19 18 22 22 C 1.54817 * 110.90505 * 182.06881 * 20 19 18 23 23 C 1.54093 * 104.18741 * 220.92156 * 22 20 19 24 24 O 1.43740 * 107.29614 * 357.96885 * 23 22 20 25 25 C 1.44430 * 107.00047 * 26.48957 * 24 23 22 26 26 H 0.97003 * 119.99794 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46827 * 59.99859 * 9 7 2 28 28 H 1.08999 * 109.47113 * 300.00266 * 9 7 2 29 29 H 1.08993 * 109.47200 * 60.00030 * 10 9 7 30 30 H 1.09003 * 109.46879 * 299.99808 * 10 9 7 31 31 H 0.97005 * 119.99680 * 245.00069 * 14 11 10 32 32 H 1.09008 * 109.47086 * 45.00440 * 15 14 11 33 33 H 1.09002 * 109.47537 * 285.00612 * 15 14 11 34 34 H 1.08995 * 109.46919 * 60.00469 * 16 15 14 35 35 H 1.08998 * 109.47566 * 300.00286 * 16 15 14 36 36 H 1.09008 * 109.47150 * 60.00558 * 17 16 15 37 37 H 1.09002 * 109.47561 * 300.00677 * 17 16 15 38 38 H 1.08993 * 109.47732 * 60.00254 * 19 18 17 39 39 H 1.09000 * 109.47141 * 299.99893 * 19 18 17 40 40 H 1.09001 * 110.48477 * 339.60241 * 22 20 19 41 41 H 1.08999 * 110.48129 * 102.11092 * 22 20 19 42 42 H 1.08999 * 109.88166 * 117.39400 * 23 22 20 43 43 H 1.09001 * 109.87621 * 238.54850 * 23 22 20 44 44 H 1.08994 * 110.65332 * 201.47516 * 25 24 23 45 45 H 1.09000 * 110.59420 * 78.46784 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 16 1.3383 -5.2330 0.0011 12 8 0.6657 -5.4199 -1.2365 13 8 0.6631 -5.4195 1.2373 14 7 2.5205 -6.3926 0.0033 15 6 3.4173 -6.5224 1.1544 16 6 4.1484 -7.8645 1.0827 17 6 5.0845 -8.0002 2.2853 18 8 5.7677 -9.2534 2.2180 19 6 6.6717 -9.4815 3.3011 20 6 7.3436 -10.8449 3.1261 21 1 6.5982 -11.6321 3.0131 22 6 8.2931 -11.1490 4.3105 23 6 9.5285 -11.7899 3.6492 24 8 9.2613 -11.8781 2.2396 25 6 8.3194 -10.8302 1.9221 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8727 -3.6047 -0.8878 31 1 2.6193 -6.9860 -0.7578 32 1 2.8358 -6.4742 2.0752 33 1 4.1450 -5.7110 1.1414 34 1 4.7298 -7.9127 0.1620 35 1 3.4207 -8.6759 1.0958 36 1 4.5027 -7.9522 3.2059 37 1 5.8122 -7.1888 2.2728 38 1 6.1226 -9.4648 4.2424 39 1 7.4322 -8.7006 3.3102 40 1 8.5696 -10.2280 4.8238 41 1 7.8249 -11.8461 5.0054 42 1 10.4063 -11.1672 3.8218 43 1 9.6925 -12.7868 4.0584 44 1 7.7904 -11.0565 0.9963 45 1 8.8262 -9.8679 1.8504 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077399440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:43 Heat of formation + Delta-G solvation = -216.037907 kcal Electronic energy + Delta-G solvation = -24276.675015 eV Core-core repulsion = 20419.541994 eV Total energy + Delta-G solvation = -3857.133022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.49918 -38.90748 -38.13714 -37.04830 -36.81545 -35.86918 -34.02579 -33.09857 -32.08153 -30.30862 -27.56616 -26.83220 -25.50403 -23.59517 -23.38946 -22.70973 -21.45419 -20.25126 -19.05114 -18.22710 -18.06345 -17.55300 -17.16593 -16.99846 -16.91227 -16.70573 -16.51234 -16.13306 -15.80065 -15.48067 -15.03994 -14.93433 -14.48264 -14.39019 -13.82613 -13.71029 -13.64172 -13.20631 -13.14427 -13.02941 -12.89090 -12.77709 -12.75354 -12.44773 -12.36074 -12.20906 -12.17896 -12.11016 -12.03626 -11.72459 -11.67130 -11.56101 -11.15124 -10.67462 -10.62325 -10.50781 -10.31667 -8.24337 -6.38228 -0.63938 1.41888 1.45125 1.53247 1.87047 2.39147 2.57890 2.86062 3.06237 3.09085 3.32771 3.58477 3.78210 3.90840 3.93785 4.04748 4.10912 4.15316 4.19209 4.25482 4.33567 4.40562 4.52641 4.55567 4.60936 4.65900 4.67290 4.78230 4.81625 4.82737 4.87039 4.89647 5.05481 5.17481 5.20905 5.28829 5.30724 5.32387 5.70091 5.90408 6.08075 6.15462 6.26814 6.75545 7.31831 8.87489 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.001923 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.691016 B =14557.618868 C =15571.450069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.587 4.587 11 S 2.625 3.375 12 O -1.001 7.001 13 O -0.998 6.998 14 N -1.109 6.109 15 C 0.107 3.893 16 C -0.118 4.118 17 C 0.061 3.939 18 O -0.406 6.406 19 C 0.071 3.929 20 C -0.120 4.120 21 H 0.085 0.915 22 C -0.144 4.144 23 C 0.039 3.961 24 O -0.409 6.409 25 C 0.052 3.948 26 H 0.266 0.734 27 H 0.005 0.995 28 H 0.008 0.992 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.425 0.575 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.721 -21.296 8.670 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.719 4.719 11 S 2.721 3.279 12 O -0.992 6.992 13 O -0.988 6.988 14 N -0.871 5.871 15 C -0.019 4.019 16 C -0.157 4.157 17 C -0.016 4.016 18 O -0.326 6.326 19 C -0.005 4.005 20 C -0.138 4.138 21 H 0.103 0.897 22 C -0.182 4.182 23 C -0.038 4.038 24 O -0.329 6.329 25 C -0.024 4.024 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.261 0.739 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.674 -21.562 8.549 29.778 hybrid contribution 0.338 1.274 -0.119 1.324 sum 19.012 -20.287 8.430 29.053 Atomic orbital electron populations 1.70098 1.08060 1.28305 1.50879 1.26120 0.95853 1.03885 0.94478 0.85370 0.78110 0.77354 0.79433 1.18887 1.21167 1.18672 1.21505 0.94023 0.90804 1.51466 0.90501 1.18835 0.93715 0.93156 0.96408 1.30325 1.12746 1.16355 1.12490 1.04300 0.74580 0.76421 0.72565 1.93502 1.73197 1.85842 1.46611 1.93496 1.72733 1.85464 1.47132 1.55256 1.52499 1.50801 1.28550 1.21413 0.93095 0.99378 0.87993 1.21567 0.98387 0.96272 0.99446 1.22478 0.94996 0.85851 0.98322 1.87824 1.58661 1.38264 1.47837 1.22532 0.92199 0.95916 0.89899 1.22686 0.97714 0.97578 0.95866 0.89688 1.22934 0.94891 1.02838 0.97507 1.23344 0.97648 1.02261 0.80504 1.88862 1.64527 1.54136 1.25345 1.23654 0.89023 0.91086 0.98631 0.92476 0.97620 0.97393 0.83706 0.83888 0.73856 0.90511 0.89166 0.89543 0.90883 0.92198 0.91334 0.91773 0.91796 0.88886 0.88956 0.91417 0.88946 0.89171 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.54 -29.29 9.11 25.60 0.23 -29.06 16 8 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.02 0.91 4.98 29.85 0.15 1.06 16 10 C -0.59 -20.86 6.01 71.98 0.43 -20.43 16 11 S 2.62 88.43 5.46 -56.49 -0.31 88.12 16 12 O -1.00 -40.75 18.08 -127.65 -2.31 -43.06 16 13 O -1.00 -40.14 17.49 -127.65 -2.23 -42.37 16 14 N -1.11 -24.51 5.88 -187.49 -1.10 -25.62 16 15 C 0.11 1.86 6.13 86.38 0.53 2.39 16 16 C -0.12 -1.68 5.73 30.59 0.18 -1.51 16 17 C 0.06 0.78 5.94 71.98 0.43 1.20 16 18 O -0.41 -6.22 10.25 -148.98 -1.53 -7.74 16 19 C 0.07 0.77 5.27 71.98 0.38 1.15 16 20 C -0.12 -1.36 3.39 -9.49 -0.03 -1.39 16 21 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 22 C -0.14 -1.10 6.60 31.58 0.21 -0.89 16 23 C 0.04 0.41 7.70 72.35 0.56 0.96 16 24 O -0.41 -7.16 11.52 -148.98 -1.72 -8.88 16 25 C 0.05 0.74 7.09 72.66 0.52 1.26 16 26 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 30 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 31 H 0.43 7.70 8.62 -96.74 -0.83 6.87 16 32 H 0.08 1.45 7.69 -2.38 -0.02 1.43 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.55 8.05 -2.39 -0.02 0.53 16 40 H 0.09 0.45 7.86 -2.39 -0.02 0.44 16 41 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 0.84 7.98 -2.39 -0.02 0.83 16 Total: -1.00 -78.30 384.61 -2.72 -81.02 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.13 Total: 15.03 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 4.04 Total: -45.08 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -0.82 Total: -81.73 kcal Atomic # 8 Polarization: -94.26 SS G_CDS: -7.78 Total: -102.05 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 88.43 SS G_CDS: -0.31 Total: 88.12 kcal Total: -78.30 -2.72 -81.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077399440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.017 kcal (2) G-P(sol) polarization free energy of solvation -78.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds