Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42899 * 113.99844 * 2 1 4 4 H 1.08999 * 109.51219 * 310.10569 * 3 2 1 5 5 C 1.53294 * 109.51204 * 189.99813 * 3 2 1 6 6 N 1.47156 * 108.38417 * 187.72352 * 5 3 2 7 7 C 1.34772 * 120.98198 * 230.51252 * 6 5 3 8 8 O 1.21282 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00082 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47396 * 179.97438 * 9 7 6 11 11 C 1.38300 * 119.93240 * 269.73011 * 10 9 7 12 12 C 1.38106 * 120.06905 * 180.27764 * 11 10 9 13 13 C 1.38880 * 119.92756 * 359.97061 * 12 11 10 14 14 O 1.35757 * 120.06262 * 180.02562 * 13 12 11 15 15 C 1.34830 * 116.99464 * 174.48954 * 14 13 12 16 16 H 1.07994 * 120.00245 * 5.05402 * 15 14 13 17 17 C 1.38652 * 119.99573 * 185.05690 * 15 14 13 18 18 N 1.31561 * 120.00249 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99913 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47221 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47447 * 119.99890 * 19 17 15 22 22 H 1.48505 * 109.47249 * 240.00015 * 19 17 15 23 23 C 1.38872 * 119.86700 * 0.02635 * 13 12 11 24 24 C 1.38100 * 119.92875 * 359.97438 * 23 13 12 25 25 C 1.47147 * 118.03430 * 50.79033 * 6 5 3 26 26 C 1.53714 * 108.16513 * 309.15597 * 25 6 5 27 27 O 1.42967 * 109.14610 * 52.53754 * 26 25 6 28 28 H 1.09000 * 109.46990 * 299.99841 * 1 2 3 29 29 H 1.08997 * 109.46903 * 59.99683 * 1 2 3 30 30 H 1.08993 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.68182 * 68.00184 * 5 3 2 32 32 H 1.08995 * 109.68164 * 307.44904 * 5 3 2 33 33 H 1.08997 * 109.47077 * 60.00227 * 9 7 6 34 34 H 1.08998 * 109.47344 * 300.00004 * 9 7 6 35 35 H 1.07994 * 119.96781 * 0.24887 * 11 10 9 36 36 H 1.08000 * 120.03526 * 180.02562 * 12 11 10 37 37 H 0.97001 * 119.99596 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.03829 * 179.97438 * 23 13 12 39 39 H 1.08002 * 119.96357 * 180.02562 * 24 23 13 40 40 H 1.09004 * 109.68196 * 68.93480 * 25 6 5 41 41 H 1.09004 * 109.68109 * 189.48684 * 25 6 5 42 42 H 1.08997 * 109.65485 * 292.57866 * 26 25 6 43 43 H 1.08991 * 109.48603 * 172.39875 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.5537 1.9072 -0.7858 5 6 3.5185 1.1945 -0.2509 6 7 4.1195 2.5243 -0.0617 7 6 4.9347 3.0561 -0.9939 8 8 5.1822 2.4374 -2.0073 9 6 5.5387 4.4197 -0.7772 10 6 6.4041 4.7792 -1.9574 11 6 7.7460 4.4447 -1.9565 12 6 8.5430 4.7779 -3.0341 13 6 7.9953 5.4489 -4.1197 14 8 8.7760 5.7773 -5.1806 15 6 8.1599 6.3245 -6.2478 16 1 7.1066 6.5585 -6.2019 17 6 8.8786 6.5867 -7.4041 18 7 10.1619 6.3021 -7.4598 19 14 8.0250 7.3442 -8.8829 20 1 6.5914 7.5675 -8.5662 21 1 8.6662 8.6421 -9.2136 22 1 8.1386 6.4257 -10.0443 23 6 6.6474 5.7833 -4.1177 24 6 5.8558 5.4474 -3.0371 25 6 3.8091 3.2536 1.1781 26 6 2.2825 3.2666 1.3570 27 8 1.7885 1.9279 1.2678 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.6969 0.8526 -1.2704 32 1 3.9572 0.4895 0.4553 33 1 6.1458 4.4084 0.1279 34 1 4.7429 5.1570 -0.6718 35 1 8.1713 3.9229 -1.1120 36 1 9.5908 4.5161 -3.0329 37 1 10.6646 6.4852 -8.2689 38 1 6.2187 6.3055 -4.9602 39 1 4.8074 5.7068 -3.0351 40 1 4.2767 2.7523 2.0256 41 1 4.1801 4.2759 1.1053 42 1 1.8270 3.8754 0.5761 43 1 2.0345 3.6818 2.3337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787939290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -115.012115 kcal Electronic energy + Delta-G solvation = -26485.687338 eV Core-core repulsion = 22497.491172 eV Total energy + Delta-G solvation = -3988.196166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68172 -39.28898 -38.63766 -37.26844 -36.47887 -34.94072 -32.52980 -31.81655 -30.86983 -30.13927 -28.49347 -27.11508 -26.01621 -25.02884 -24.22757 -22.45963 -21.95703 -20.74378 -19.30705 -17.96749 -17.81336 -17.40860 -17.01795 -16.94844 -16.45779 -15.84347 -15.40976 -14.80953 -14.61269 -14.51057 -14.50407 -14.29364 -14.20587 -13.68352 -13.57087 -13.34132 -13.26322 -12.71547 -12.62118 -12.44596 -12.15356 -11.85217 -11.68220 -11.52075 -11.46010 -11.26174 -10.84595 -10.74966 -10.65320 -10.59023 -10.40705 -10.32889 -9.78489 -9.30730 -8.86840 -8.80820 -8.13801 -7.15351 -6.43008 -4.01497 2.19125 2.26598 2.55646 2.65392 2.89245 3.13603 3.15402 3.20763 3.67660 3.98469 4.26912 4.33230 4.46122 4.57505 4.66734 4.73461 4.84438 4.97000 5.04913 5.07211 5.10933 5.14278 5.21121 5.30222 5.32503 5.32808 5.41435 5.52765 5.61555 5.72223 5.85603 6.07601 6.23265 6.42979 6.47263 6.71101 6.72567 6.92111 7.06111 7.15377 7.25921 7.37665 7.46630 7.85086 8.02362 8.13982 9.02807 9.73268 10.75177 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.002362 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.673906 B =11849.950289 C =12419.359508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.245 3.755 4 H 0.060 0.940 5 C 0.095 3.905 6 N -0.626 5.626 7 C 0.515 3.485 8 O -0.512 6.512 9 C -0.076 4.076 10 C -0.173 4.173 11 C -0.058 4.058 12 C -0.191 4.191 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.232 4.232 24 C -0.056 4.056 25 C 0.070 3.930 26 C 0.059 3.941 27 O -0.405 6.405 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.269 0.731 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 -5.480 18.933 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.148 3.852 4 H 0.077 0.923 5 C -0.028 4.028 6 N -0.364 5.364 7 C 0.303 3.697 8 O -0.385 6.385 9 C -0.116 4.116 10 C -0.175 4.175 11 C -0.077 4.077 12 C -0.210 4.210 13 C 0.103 3.897 14 O -0.081 6.081 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.252 4.252 24 C -0.074 4.074 25 C -0.053 4.053 26 C -0.019 4.019 27 O -0.326 6.326 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.144 0.856 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.123 -6.082 18.260 25.761 hybrid contribution -0.670 0.656 -0.835 1.256 sum -17.793 -5.426 17.425 25.488 Atomic orbital electron populations 1.22811 0.79837 1.03181 1.00684 1.87992 1.21057 1.25271 1.93948 1.23294 0.93347 0.83223 0.85345 0.92289 1.21824 0.90524 0.85231 1.05237 1.48243 1.49427 1.18523 1.20237 1.21184 0.77757 0.88529 0.82180 1.90758 1.58576 1.62125 1.26990 1.20434 0.99247 0.92782 0.99138 1.18617 0.93894 1.08330 0.96623 1.20397 0.92803 0.97570 0.96910 1.20160 1.00248 1.06328 0.94300 1.19385 0.89855 0.91606 0.88806 1.83980 1.34071 1.68796 1.21273 1.21375 0.95315 1.40115 0.89865 0.89027 1.25295 0.95747 0.97374 0.98176 1.70053 1.06760 1.44570 1.28388 0.85644 0.79033 0.78587 0.80133 1.19121 1.20166 1.20137 1.21100 0.94389 1.09014 1.00665 1.20490 0.97749 0.96500 0.92676 1.22583 0.96523 0.98786 0.87412 1.23038 0.92720 0.82713 1.03393 1.87815 1.80693 1.28402 1.35692 0.92950 0.93795 0.89108 0.87239 0.89902 0.88791 0.88959 0.87367 0.86497 0.92093 0.85566 0.87907 0.90098 0.87945 0.92281 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.36 -3.88 10.62 -59.03 -0.63 -4.51 16 3 C 0.24 2.48 3.30 37.31 0.12 2.60 16 4 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 5 C 0.10 1.06 6.29 -3.53 -0.02 1.03 16 6 N -0.63 -6.69 3.01 -172.02 -0.52 -7.21 16 7 C 0.51 7.16 7.70 -10.99 -0.08 7.07 16 8 O -0.51 -9.66 15.50 5.56 0.09 -9.57 16 9 C -0.08 -0.92 4.20 -29.04 -0.12 -1.05 16 10 C -0.17 -2.99 4.38 -104.57 -0.46 -3.44 16 11 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 12 C -0.19 -4.18 9.99 -39.39 -0.39 -4.58 16 13 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 14 O -0.18 -5.19 9.76 0.03 0.00 -5.19 16 15 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 16 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.65 13.67 55.48 0.76 -24.90 16 19 Si 0.94 20.84 29.55 -169.99 -5.02 15.81 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.23 -5.20 9.17 -39.40 -0.36 -5.57 16 24 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 25 C 0.07 0.47 6.57 -3.32 -0.02 0.45 16 26 C 0.06 0.37 7.00 37.53 0.26 0.63 16 27 O -0.40 -3.84 10.24 -59.03 -0.60 -4.45 16 28 H 0.05 0.37 7.90 -51.93 -0.41 -0.04 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.40 7.08 -51.93 -0.37 1.04 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.90 7.95 -51.93 -0.41 0.48 16 34 H 0.09 0.87 7.61 -51.93 -0.40 0.47 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.48 6.05 -51.93 -0.31 0.17 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -35.58 361.02 -7.12 -42.71 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.83 Total: 2.46 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.81 Total: -10.60 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.24 Total: -32.11 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.14 Total: -23.71 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.58 -7.12 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787939290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.305 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds