Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42899 * 113.99844 * 2 1 4 4 H 1.08999 * 109.51219 * 310.10569 * 3 2 1 5 5 C 1.53294 * 109.51204 * 189.99813 * 3 2 1 6 6 N 1.47156 * 108.38417 * 187.72352 * 5 3 2 7 7 C 1.34772 * 120.98198 * 230.51252 * 6 5 3 8 8 O 1.21282 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00082 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47396 * 179.97438 * 9 7 6 11 11 C 1.38300 * 119.93240 * 269.73011 * 10 9 7 12 12 C 1.38106 * 120.06905 * 180.27764 * 11 10 9 13 13 C 1.38880 * 119.92756 * 359.97061 * 12 11 10 14 14 O 1.35757 * 120.06262 * 180.02562 * 13 12 11 15 15 C 1.34830 * 116.99464 * 174.48954 * 14 13 12 16 16 H 1.07994 * 120.00245 * 5.05402 * 15 14 13 17 17 C 1.38652 * 119.99573 * 185.05690 * 15 14 13 18 18 N 1.31561 * 120.00249 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99913 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47221 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47447 * 119.99890 * 19 17 15 22 22 H 1.48505 * 109.47249 * 240.00015 * 19 17 15 23 23 C 1.38872 * 119.86700 * 0.02635 * 13 12 11 24 24 C 1.38100 * 119.92875 * 359.97438 * 23 13 12 25 25 C 1.47147 * 118.03430 * 50.79033 * 6 5 3 26 26 C 1.53714 * 108.16513 * 309.15597 * 25 6 5 27 27 O 1.42967 * 109.14610 * 52.53754 * 26 25 6 28 28 H 1.09000 * 109.46990 * 299.99841 * 1 2 3 29 29 H 1.08997 * 109.46903 * 59.99683 * 1 2 3 30 30 H 1.08993 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.68182 * 68.00184 * 5 3 2 32 32 H 1.08995 * 109.68164 * 307.44904 * 5 3 2 33 33 H 1.08997 * 109.47077 * 60.00227 * 9 7 6 34 34 H 1.08998 * 109.47344 * 300.00004 * 9 7 6 35 35 H 1.07994 * 119.96781 * 0.24887 * 11 10 9 36 36 H 1.08000 * 120.03526 * 180.02562 * 12 11 10 37 37 H 0.97001 * 119.99596 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.03829 * 179.97438 * 23 13 12 39 39 H 1.08002 * 119.96357 * 180.02562 * 24 23 13 40 40 H 1.09004 * 109.68196 * 68.93480 * 25 6 5 41 41 H 1.09004 * 109.68109 * 189.48684 * 25 6 5 42 42 H 1.08997 * 109.65485 * 292.57866 * 26 25 6 43 43 H 1.08991 * 109.48603 * 172.39875 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.5537 1.9072 -0.7858 5 6 3.5185 1.1945 -0.2509 6 7 4.1195 2.5243 -0.0617 7 6 4.9347 3.0561 -0.9939 8 8 5.1822 2.4374 -2.0073 9 6 5.5387 4.4197 -0.7772 10 6 6.4041 4.7792 -1.9574 11 6 7.7460 4.4447 -1.9565 12 6 8.5430 4.7779 -3.0341 13 6 7.9953 5.4489 -4.1197 14 8 8.7760 5.7773 -5.1806 15 6 8.1599 6.3245 -6.2478 16 1 7.1066 6.5585 -6.2019 17 6 8.8786 6.5867 -7.4041 18 7 10.1619 6.3021 -7.4598 19 14 8.0250 7.3442 -8.8829 20 1 6.5914 7.5675 -8.5662 21 1 8.6662 8.6421 -9.2136 22 1 8.1386 6.4257 -10.0443 23 6 6.6474 5.7833 -4.1177 24 6 5.8558 5.4474 -3.0371 25 6 3.8091 3.2536 1.1781 26 6 2.2825 3.2666 1.3570 27 8 1.7885 1.9279 1.2678 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.6969 0.8526 -1.2704 32 1 3.9572 0.4895 0.4553 33 1 6.1458 4.4084 0.1279 34 1 4.7429 5.1570 -0.6718 35 1 8.1713 3.9229 -1.1120 36 1 9.5908 4.5161 -3.0329 37 1 10.6646 6.4852 -8.2689 38 1 6.2187 6.3055 -4.9602 39 1 4.8074 5.7068 -3.0351 40 1 4.2767 2.7523 2.0256 41 1 4.1801 4.2759 1.1053 42 1 1.8270 3.8754 0.5761 43 1 2.0345 3.6818 2.3337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787939290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -140.386127 kcal Electronic energy + Delta-G solvation = -26486.787638 eV Core-core repulsion = 22497.491172 eV Total energy + Delta-G solvation = -3989.296465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58276 -40.73804 -39.84463 -38.26246 -37.90480 -35.82285 -34.41067 -33.11061 -31.81971 -31.72510 -29.38578 -28.20002 -27.36069 -26.53885 -24.88552 -23.64329 -23.35784 -22.18457 -20.26249 -19.83021 -18.83990 -18.64713 -18.14238 -17.73776 -17.34070 -16.79973 -16.50440 -16.32733 -16.01763 -15.81602 -15.51830 -15.37430 -15.20213 -15.03310 -14.92465 -14.48853 -14.36810 -14.16042 -14.05992 -13.60019 -13.23742 -12.98354 -12.88004 -12.71636 -12.49222 -12.31804 -12.28336 -12.21515 -12.09953 -12.02993 -11.41021 -11.17882 -11.00846 -10.93411 -10.75110 -9.76445 -9.70087 -8.90649 -8.47880 -6.15959 0.61604 0.65349 1.33603 1.41996 1.52407 1.57559 1.71633 2.17054 2.24382 2.81518 3.04269 3.14167 3.51976 3.58211 3.65382 3.75641 3.91499 3.99833 4.04328 4.18476 4.20663 4.30990 4.39678 4.45309 4.47413 4.52069 4.59243 4.63148 4.66169 4.74934 4.80123 4.82332 4.90804 5.08470 5.14374 5.27156 5.30514 5.56549 5.71686 5.76811 5.81943 6.02743 6.09514 6.18799 6.31195 6.96825 7.13458 7.78321 8.75846 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.002362 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.673906 B =11849.950289 C =12419.359508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.388 6.388 3 C 0.251 3.749 4 H 0.060 0.940 5 C 0.094 3.906 6 N -0.617 5.617 7 C 0.515 3.485 8 O -0.575 6.575 9 C -0.073 4.073 10 C -0.147 4.147 11 C -0.057 4.057 12 C -0.207 4.207 13 C 0.112 3.888 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.252 1.252 21 H -0.265 1.265 22 H -0.270 1.270 23 C -0.244 4.244 24 C -0.058 4.058 25 C 0.064 3.936 26 C 0.052 3.948 27 O -0.417 6.417 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.273 0.727 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.133 0.867 42 H 0.065 0.935 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.873 -4.793 22.059 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.307 6.307 3 C 0.154 3.846 4 H 0.077 0.923 5 C -0.030 4.030 6 N -0.353 5.353 7 C 0.305 3.695 8 O -0.453 6.453 9 C -0.112 4.112 10 C -0.148 4.148 11 C -0.075 4.075 12 C -0.226 4.226 13 C 0.062 3.938 14 O -0.141 6.141 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.175 1.175 21 H -0.190 1.190 22 H -0.195 1.195 23 C -0.264 4.264 24 C -0.076 4.076 25 C -0.058 4.058 26 C -0.024 4.024 27 O -0.338 6.338 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.157 0.843 40 H 0.111 0.889 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.328 -5.394 21.497 30.074 hybrid contribution 0.118 0.294 -1.389 1.424 sum -20.209 -5.100 20.109 28.962 Atomic orbital electron populations 1.22985 0.78282 1.04424 1.01182 1.87953 1.22806 1.25809 1.94114 1.23106 0.92324 0.83239 0.85891 0.92272 1.21758 0.91725 0.85667 1.03817 1.48245 1.47954 1.18248 1.20853 1.21395 0.77671 0.88743 0.81702 1.90762 1.61089 1.63795 1.29692 1.20586 1.00150 0.92598 0.97907 1.19243 0.93961 1.04246 0.97382 1.20881 0.93321 0.96614 0.96662 1.20445 1.00791 1.06503 0.94895 1.19951 0.91218 0.93693 0.88945 1.83941 1.35840 1.71551 1.22737 1.21857 0.95967 1.40528 0.90540 0.88222 1.26623 0.96508 0.97792 1.01317 1.70198 1.08786 1.47365 1.29659 0.84512 0.78412 0.77771 0.75369 1.17496 1.19023 1.19475 1.21227 0.93854 1.09354 1.01916 1.20931 0.99121 0.95844 0.91747 1.22973 0.97116 1.00018 0.85648 1.23349 0.92297 0.81357 1.05404 1.87818 1.80960 1.30023 1.34998 0.92629 0.93052 0.87620 0.89739 0.89825 0.84723 0.84742 0.83574 0.87060 0.91844 0.86513 0.84281 0.88859 0.84893 0.91680 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.89 113.37 1.23 1.59 16 2 O -0.39 -7.82 10.62 -126.23 -1.34 -9.16 16 3 C 0.25 4.64 3.30 72.08 0.24 4.88 16 4 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 5 C 0.09 1.96 6.29 86.35 0.54 2.50 16 6 N -0.62 -11.00 3.01 -816.54 -2.46 -13.47 16 7 C 0.51 12.49 7.70 87.66 0.68 13.17 16 8 O -0.58 -20.98 15.50 -3.04 -0.05 -21.03 16 9 C -0.07 -1.35 4.20 29.10 0.12 -1.23 16 10 C -0.15 -4.55 4.38 -19.83 -0.09 -4.64 16 11 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 12 C -0.21 -9.30 9.99 22.39 0.22 -9.08 16 13 C 0.11 5.86 6.65 22.58 0.15 6.01 16 14 O -0.23 -14.65 9.76 -22.81 -0.22 -14.87 16 15 C -0.41 -24.89 9.49 67.92 0.64 -24.25 16 16 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 17 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 18 N -0.92 -58.06 13.67 21.61 0.30 -57.77 16 19 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 20 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 C -0.24 -11.14 9.17 22.39 0.21 -10.93 16 24 C -0.06 -2.07 9.69 22.25 0.22 -1.85 16 25 C 0.06 0.52 6.57 86.50 0.57 1.08 16 26 C 0.05 0.41 7.00 72.22 0.51 0.92 16 27 O -0.42 -6.60 10.24 -126.23 -1.29 -7.89 16 28 H 0.05 0.69 7.90 -2.39 -0.02 0.67 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 2.19 7.08 -2.39 -0.02 2.18 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.13 1.54 7.95 -2.39 -0.02 1.52 16 34 H 0.13 1.49 7.61 -2.39 -0.02 1.47 16 35 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.13 0.28 6.05 -2.38 -0.01 0.27 16 42 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -86.38 361.02 3.90 -82.48 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.02 Total: 20.20 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 5.92 Total: -24.60 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -2.17 Total: -71.23 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -2.90 Total: -52.95 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -86.38 3.90 -82.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787939290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.909 kcal (2) G-P(sol) polarization free energy of solvation -86.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds