Wall clock time and date at job start Tue Mar 31 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00249 * 2 1 4 4 H 1.09005 * 109.55121 * 309.87639 * 3 2 1 5 5 C 1.52880 * 109.58622 * 189.88226 * 3 2 1 6 6 N 1.47148 * 108.60925 * 187.92103 * 5 3 2 7 7 C 1.34776 * 120.98347 * 230.50227 * 6 5 3 8 8 O 1.21277 * 120.00017 * 359.71508 * 7 6 5 9 9 C 1.50699 * 120.00162 * 179.71774 * 7 6 5 10 10 C 1.50695 * 109.47229 * 179.97438 * 9 7 6 11 11 C 1.38329 * 119.96495 * 90.00185 * 10 9 7 12 12 C 1.38273 * 120.13592 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07362 * 359.97438 * 12 11 10 14 14 C 1.38863 * 119.92857 * 359.97438 * 13 12 11 15 15 O 1.35752 * 120.06612 * 179.72724 * 14 13 12 16 16 C 1.34824 * 117.00135 * 354.44967 * 15 14 13 17 17 H 1.08003 * 120.00008 * 5.05852 * 16 15 14 18 18 C 1.38655 * 120.00042 * 185.04935 * 16 15 14 19 19 N 1.31557 * 119.99847 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47063 * 60.00426 * 20 18 16 22 22 H 1.48503 * 109.47194 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47303 * 300.00176 * 20 18 16 24 24 C 1.38072 * 119.96721 * 269.95444 * 10 9 7 25 25 C 1.47153 * 118.03534 * 50.22823 * 6 5 3 26 26 C 1.53298 * 108.38374 * 309.71425 * 25 6 5 27 27 O 1.42959 * 109.22154 * 52.30398 * 26 25 6 28 28 H 1.09003 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46928 * 300.00074 * 1 2 3 30 30 H 1.08997 * 109.47213 * 59.99789 * 1 2 3 31 31 H 1.09004 * 109.61309 * 68.10201 * 5 3 2 32 32 H 1.08993 * 109.51924 * 307.68865 * 5 3 2 33 33 H 1.09004 * 109.47123 * 59.99500 * 9 7 6 34 34 H 1.09003 * 109.47041 * 300.00405 * 9 7 6 35 35 H 1.08002 * 119.92931 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.96479 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.03597 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99615 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.03702 * 0.04834 * 24 10 9 40 40 H 1.09000 * 109.68409 * 69.43952 * 25 6 5 41 41 H 1.08996 * 109.68449 * 189.95614 * 25 6 5 42 42 H 1.09006 * 109.51300 * 172.22598 * 26 25 6 43 43 H 1.08999 * 109.51495 * 292.37511 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.5570 1.9065 -0.7883 5 6 3.5150 1.1963 -0.2472 6 7 4.1199 2.5238 -0.0543 7 6 4.9383 3.0550 -0.9841 8 8 5.1898 2.4353 -1.9958 9 6 5.5407 4.4192 -0.7667 10 6 6.4102 4.7777 -1.9441 11 6 5.8663 5.4450 -3.0269 12 6 6.6607 5.7753 -4.1093 13 6 8.0006 5.4402 -4.1123 14 6 8.5499 4.7712 -3.0265 15 8 9.8653 4.4356 -3.0288 16 6 10.5565 4.6768 -4.1610 17 1 10.0828 5.1921 -4.9835 18 6 11.8756 4.2634 -4.2693 19 7 12.4524 3.6354 -3.2675 20 14 12.8335 4.5982 -5.8377 21 1 12.8957 6.0626 -6.0766 22 1 14.2110 4.0606 -5.7007 23 1 12.1556 3.9383 -6.9822 24 6 7.7492 4.4408 -1.9407 25 6 3.8001 3.2567 1.1810 26 6 2.2772 3.2677 1.3561 27 8 1.7835 1.9291 1.2663 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.6945 0.8557 -1.2670 32 1 3.9497 0.4887 0.4587 33 1 6.1445 4.4093 0.1408 34 1 4.7441 5.1562 -0.6650 35 1 4.8187 5.7078 -3.0271 36 1 6.2331 6.2960 -4.9534 37 1 8.6207 5.6988 -4.9580 38 1 13.3754 3.3466 -3.3432 39 1 8.1734 3.9198 -1.0950 40 1 4.2641 2.7601 2.0331 41 1 4.1690 4.2797 1.1068 42 1 2.0260 3.6837 2.3318 43 1 1.8250 3.8760 0.5728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807924300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:01 Heat of formation + Delta-G solvation = -114.172222 kcal Electronic energy + Delta-G solvation = -26611.254787 eV Core-core repulsion = 22623.095042 eV Total energy + Delta-G solvation = -3988.159745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68746 -39.29797 -38.61466 -37.25471 -36.44514 -34.92627 -32.49726 -32.12071 -31.12967 -29.25006 -28.54945 -27.30902 -26.09340 -25.17435 -24.21553 -22.51338 -21.62632 -20.89335 -19.38394 -17.81344 -17.63897 -17.39418 -17.02317 -16.92705 -16.30090 -15.79682 -15.45528 -15.00827 -14.71900 -14.52814 -14.44254 -14.35042 -14.27981 -13.67859 -13.56350 -13.32457 -13.20009 -12.72782 -12.50823 -12.32775 -12.09266 -11.83347 -11.65418 -11.53442 -11.43407 -11.23988 -10.81654 -10.75633 -10.63208 -10.60292 -10.42719 -10.30840 -9.80367 -9.30828 -8.84637 -8.79501 -8.04908 -7.18915 -6.40134 -3.99227 2.06195 2.40725 2.55679 2.65655 2.91132 3.15796 3.17831 3.20063 3.69828 4.00269 4.30745 4.34036 4.47049 4.59823 4.68670 4.73789 4.85386 4.94987 4.98546 5.06800 5.13164 5.15749 5.16546 5.31624 5.35472 5.40984 5.45957 5.57460 5.65077 5.76153 5.94360 6.09056 6.20348 6.36268 6.49545 6.67534 6.74724 6.93907 7.10064 7.14554 7.27944 7.39427 7.47258 7.85104 8.04674 8.13838 9.05450 9.76023 10.78061 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.002400 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.727727 B =11662.714174 C =11908.477079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.246 3.754 4 H 0.059 0.941 5 C 0.094 3.906 6 N -0.624 5.624 7 C 0.520 3.480 8 O -0.510 6.510 9 C -0.090 4.090 10 C -0.035 4.035 11 C -0.197 4.197 12 C -0.074 4.074 13 C -0.230 4.230 14 C 0.155 3.845 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.173 4.173 25 C 0.069 3.931 26 C 0.059 3.941 27 O -0.405 6.405 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.270 0.730 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 0.327 9.498 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.149 3.851 4 H 0.076 0.924 5 C -0.029 4.029 6 N -0.362 5.362 7 C 0.308 3.692 8 O -0.382 6.382 9 C -0.130 4.130 10 C -0.036 4.036 11 C -0.216 4.216 12 C -0.093 4.093 13 C -0.249 4.249 14 C 0.101 3.899 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.192 4.192 25 C -0.054 4.054 26 C -0.018 4.018 27 O -0.326 6.326 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.894 -0.494 9.280 23.784 hybrid contribution 0.295 0.479 -0.921 1.079 sum -21.599 -0.015 8.359 23.160 Atomic orbital electron populations 1.22808 0.79858 1.03176 1.00652 1.87995 1.21036 1.25227 1.93946 1.23190 0.93348 0.83218 0.85382 0.92351 1.21746 0.90522 0.85235 1.05366 1.48164 1.49014 1.18580 1.20479 1.20866 0.77864 0.88197 0.82254 1.90773 1.58398 1.61989 1.27074 1.20616 0.99516 0.93440 0.99437 1.18642 0.92502 0.98230 0.94242 1.20325 0.98507 1.07263 0.95497 1.20671 0.93445 0.98161 0.96983 1.21181 0.95965 1.06977 1.00824 1.19267 0.85319 0.92178 0.93119 1.83972 1.14989 1.72109 1.37191 1.21267 0.94305 1.38678 0.92500 0.89171 1.25277 0.96112 0.96145 0.98999 1.70034 1.13257 1.35962 1.30685 0.85789 0.78551 0.78914 0.80208 1.19542 1.20306 1.19515 1.19937 0.92533 1.07286 0.99491 1.22520 0.96526 0.98774 0.87622 1.22961 0.92724 0.82722 1.03401 1.87818 1.80541 1.28370 1.35845 0.89109 0.92948 0.93830 0.87186 0.89772 0.88063 0.88340 0.88021 0.87468 0.85595 0.92034 0.86814 0.89959 0.87929 0.87025 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.36 -3.96 10.62 -59.03 -0.63 -4.59 16 3 C 0.25 2.55 3.28 37.10 0.12 2.67 16 4 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 5 C 0.09 1.10 6.26 -3.75 -0.02 1.08 16 6 N -0.62 -7.09 3.03 -172.53 -0.52 -7.61 16 7 C 0.52 7.64 7.70 -10.99 -0.08 7.56 16 8 O -0.51 -10.03 15.50 5.56 0.09 -9.94 16 9 C -0.09 -1.17 4.20 -29.04 -0.12 -1.30 16 10 C -0.04 -0.65 4.37 -104.65 -0.46 -1.10 16 11 C -0.20 -3.53 9.70 -39.53 -0.38 -3.91 16 12 C -0.07 -1.43 10.04 -39.61 -0.40 -1.82 16 13 C -0.23 -5.21 9.17 -39.39 -0.36 -5.57 16 14 C 0.15 3.88 6.65 -39.11 -0.26 3.62 16 15 O -0.18 -5.26 9.76 0.06 0.00 -5.26 16 16 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 17 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 20 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.17 -3.80 9.64 -39.40 -0.38 -4.18 16 25 C 0.07 0.50 6.54 -3.53 -0.02 0.48 16 26 C 0.06 0.39 6.98 37.31 0.26 0.65 16 27 O -0.40 -3.95 10.23 -59.03 -0.60 -4.55 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.38 7.89 -51.93 -0.41 -0.03 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.11 1.46 7.08 -51.93 -0.37 1.10 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.11 7.96 -51.93 -0.41 0.70 16 34 H 0.10 0.94 7.60 -51.93 -0.39 0.54 16 35 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 39 H 0.11 2.43 8.06 -52.48 -0.42 2.00 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.53 6.05 -51.93 -0.31 0.22 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -36.05 360.95 -7.13 -43.18 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.83 Total: 2.91 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -0.81 Total: -10.42 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.24 Total: -32.72 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -1.14 Total: -24.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.05 -7.13 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807924300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.994 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds