Wall clock time and date at job start Tue Mar 31 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00249 * 2 1 4 4 H 1.09005 * 109.55121 * 309.87639 * 3 2 1 5 5 C 1.52880 * 109.58622 * 189.88226 * 3 2 1 6 6 N 1.47148 * 108.60925 * 187.92103 * 5 3 2 7 7 C 1.34776 * 120.98347 * 230.50227 * 6 5 3 8 8 O 1.21277 * 120.00017 * 359.71508 * 7 6 5 9 9 C 1.50699 * 120.00162 * 179.71774 * 7 6 5 10 10 C 1.50695 * 109.47229 * 179.97438 * 9 7 6 11 11 C 1.38329 * 119.96495 * 90.00185 * 10 9 7 12 12 C 1.38273 * 120.13592 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07362 * 359.97438 * 12 11 10 14 14 C 1.38863 * 119.92857 * 359.97438 * 13 12 11 15 15 O 1.35752 * 120.06612 * 179.72724 * 14 13 12 16 16 C 1.34824 * 117.00135 * 354.44967 * 15 14 13 17 17 H 1.08003 * 120.00008 * 5.05852 * 16 15 14 18 18 C 1.38655 * 120.00042 * 185.04935 * 16 15 14 19 19 N 1.31557 * 119.99847 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00049 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47063 * 60.00426 * 20 18 16 22 22 H 1.48503 * 109.47194 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47303 * 300.00176 * 20 18 16 24 24 C 1.38072 * 119.96721 * 269.95444 * 10 9 7 25 25 C 1.47153 * 118.03534 * 50.22823 * 6 5 3 26 26 C 1.53298 * 108.38374 * 309.71425 * 25 6 5 27 27 O 1.42959 * 109.22154 * 52.30398 * 26 25 6 28 28 H 1.09003 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46928 * 300.00074 * 1 2 3 30 30 H 1.08997 * 109.47213 * 59.99789 * 1 2 3 31 31 H 1.09004 * 109.61309 * 68.10201 * 5 3 2 32 32 H 1.08993 * 109.51924 * 307.68865 * 5 3 2 33 33 H 1.09004 * 109.47123 * 59.99500 * 9 7 6 34 34 H 1.09003 * 109.47041 * 300.00405 * 9 7 6 35 35 H 1.08002 * 119.92931 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.96479 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.03597 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99615 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.03702 * 0.04834 * 24 10 9 40 40 H 1.09000 * 109.68409 * 69.43952 * 25 6 5 41 41 H 1.08996 * 109.68449 * 189.95614 * 25 6 5 42 42 H 1.09006 * 109.51300 * 172.22598 * 26 25 6 43 43 H 1.08999 * 109.51495 * 292.37511 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.5570 1.9065 -0.7883 5 6 3.5150 1.1963 -0.2472 6 7 4.1199 2.5238 -0.0543 7 6 4.9383 3.0550 -0.9841 8 8 5.1898 2.4353 -1.9958 9 6 5.5407 4.4192 -0.7667 10 6 6.4102 4.7777 -1.9441 11 6 5.8663 5.4450 -3.0269 12 6 6.6607 5.7753 -4.1093 13 6 8.0006 5.4402 -4.1123 14 6 8.5499 4.7712 -3.0265 15 8 9.8653 4.4356 -3.0288 16 6 10.5565 4.6768 -4.1610 17 1 10.0828 5.1921 -4.9835 18 6 11.8756 4.2634 -4.2693 19 7 12.4524 3.6354 -3.2675 20 14 12.8335 4.5982 -5.8377 21 1 12.8957 6.0626 -6.0766 22 1 14.2110 4.0606 -5.7007 23 1 12.1556 3.9383 -6.9822 24 6 7.7492 4.4408 -1.9407 25 6 3.8001 3.2567 1.1810 26 6 2.2772 3.2677 1.3561 27 8 1.7835 1.9291 1.2663 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.6945 0.8557 -1.2670 32 1 3.9497 0.4887 0.4587 33 1 6.1445 4.4093 0.1408 34 1 4.7441 5.1562 -0.6650 35 1 4.8187 5.7078 -3.0271 36 1 6.2331 6.2960 -4.9534 37 1 8.6207 5.6988 -4.9580 38 1 13.3754 3.3466 -3.3432 39 1 8.1734 3.9198 -1.0950 40 1 4.2641 2.7601 2.0331 41 1 4.1690 4.2797 1.1068 42 1 2.0260 3.6837 2.3318 43 1 1.8250 3.8760 0.5728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807924300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:01 Heat of formation + Delta-G solvation = -140.026058 kcal Electronic energy + Delta-G solvation = -26612.375893 eV Core-core repulsion = 22623.095042 eV Total energy + Delta-G solvation = -3989.280852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64311 -40.74717 -39.86692 -38.25303 -37.92648 -35.86046 -34.35359 -33.61622 -31.97108 -30.89423 -29.55637 -28.32992 -27.36050 -26.81921 -24.90899 -23.53518 -23.20840 -22.39716 -20.44425 -19.43435 -18.77078 -18.69168 -18.17445 -17.73845 -17.25090 -16.88322 -16.61640 -16.52164 -16.11264 -16.01434 -15.51768 -15.38068 -15.23667 -15.00960 -14.91131 -14.49414 -14.24545 -14.17500 -14.02655 -13.59549 -13.22107 -12.96233 -12.90995 -12.73399 -12.48934 -12.35869 -12.31444 -12.22026 -12.12896 -12.03824 -11.43332 -11.21013 -11.00974 -10.96634 -10.78873 -9.74416 -9.64400 -8.97941 -8.47220 -6.15792 0.49998 0.75637 1.33321 1.44670 1.50123 1.51596 1.65956 2.17494 2.23679 2.81973 3.03426 3.13017 3.43198 3.55916 3.63638 3.71732 3.88061 3.97977 4.09756 4.15955 4.28671 4.30839 4.36667 4.42512 4.44849 4.52718 4.57195 4.58971 4.61574 4.73753 4.74484 4.82604 4.88738 5.05982 5.12349 5.23845 5.30346 5.64663 5.72394 5.74752 5.82024 6.02470 6.09443 6.16145 6.27759 6.97252 7.06227 7.78950 8.76200 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.002400 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.727727 B =11662.714174 C =11908.477079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.389 6.389 3 C 0.254 3.746 4 H 0.065 0.935 5 C 0.092 3.908 6 N -0.615 5.615 7 C 0.518 3.482 8 O -0.574 6.574 9 C -0.086 4.086 10 C -0.028 4.028 11 C -0.179 4.179 12 C -0.074 4.074 13 C -0.247 4.247 14 C 0.111 3.889 15 O -0.235 6.235 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.254 1.254 22 H -0.271 1.271 23 H -0.260 1.260 24 C -0.192 4.192 25 C 0.061 3.939 26 C 0.055 3.945 27 O -0.417 6.417 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.272 0.728 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.883 2.367 9.936 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.308 6.308 3 C 0.157 3.843 4 H 0.083 0.917 5 C -0.032 4.032 6 N -0.351 5.351 7 C 0.308 3.692 8 O -0.452 6.452 9 C -0.125 4.125 10 C -0.028 4.028 11 C -0.197 4.197 12 C -0.092 4.092 13 C -0.266 4.266 14 C 0.061 3.939 15 O -0.142 6.142 16 C -0.491 4.491 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.178 1.178 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.211 4.211 25 C -0.061 4.061 26 C -0.021 4.021 27 O -0.338 6.338 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.407 1.580 9.779 27.270 hybrid contribution 0.970 -0.127 -0.887 1.321 sum -24.436 1.453 8.892 26.045 Atomic orbital electron populations 1.22993 0.78158 1.04426 1.01287 1.87956 1.22930 1.25779 1.94124 1.22984 0.91960 0.83316 0.86045 0.91743 1.21697 0.92116 0.85510 1.03845 1.48182 1.47562 1.18344 1.21027 1.21129 0.77722 0.88476 0.81848 1.90763 1.60857 1.63643 1.29892 1.20748 1.00352 0.93592 0.97849 1.19177 0.91319 0.96105 0.96222 1.20977 1.00457 1.04277 0.93984 1.21139 0.91871 0.97407 0.98757 1.21310 0.97789 1.07506 0.99973 1.19887 0.84708 0.93977 0.95367 1.83931 1.17246 1.74879 1.38099 1.21784 0.95085 1.39177 0.93016 0.88236 1.26622 0.96904 0.95660 1.03024 1.70188 1.13857 1.38502 1.33539 0.84641 0.76773 0.79577 0.75158 1.17837 1.19495 1.18448 1.20223 0.94320 1.07904 0.98683 1.22918 0.97565 0.99897 0.85679 1.23264 0.91806 0.81442 1.05620 1.87820 1.80706 1.30027 1.35257 0.87688 0.92627 0.92800 0.89587 0.90274 0.85697 0.83160 0.83306 0.83656 0.86481 0.91860 0.87647 0.89339 0.84906 0.83943 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.89 113.37 1.23 1.59 16 2 O -0.39 -8.14 10.62 -126.22 -1.34 -9.48 16 3 C 0.25 4.88 3.28 71.94 0.24 5.12 16 4 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 5 C 0.09 2.11 6.26 86.22 0.54 2.65 16 6 N -0.62 -12.57 3.03 -818.17 -2.48 -15.04 16 7 C 0.52 14.17 7.70 87.66 0.68 14.85 16 8 O -0.57 -22.56 15.50 -3.02 -0.05 -22.61 16 9 C -0.09 -1.89 4.20 29.10 0.12 -1.77 16 10 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 11 C -0.18 -5.69 9.70 22.30 0.22 -5.47 16 12 C -0.07 -2.65 10.04 22.25 0.22 -2.43 16 13 C -0.25 -11.35 9.17 22.39 0.21 -11.14 16 14 C 0.11 5.83 6.65 22.58 0.15 5.98 16 15 O -0.23 -14.81 9.76 -22.70 -0.22 -15.03 16 16 C -0.41 -25.18 9.49 67.92 0.64 -24.54 16 17 H 0.10 5.56 5.20 -2.91 -0.02 5.54 16 18 C -0.03 -1.47 5.49 84.83 0.47 -1.01 16 19 N -0.92 -58.49 13.67 21.61 0.30 -58.19 16 20 Si 1.02 44.34 29.55 68.60 2.03 46.37 16 21 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 C -0.19 -8.63 9.64 22.39 0.22 -8.41 16 25 C 0.06 0.64 6.54 86.35 0.57 1.20 16 26 C 0.05 0.48 6.98 72.08 0.50 0.98 16 27 O -0.42 -6.98 10.23 -126.22 -1.29 -8.27 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 0.70 7.89 -2.39 -0.02 0.68 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 2.39 7.08 -2.38 -0.02 2.37 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.13 2.23 7.96 -2.38 -0.02 2.21 16 34 H 0.15 1.79 7.60 -2.39 -0.02 1.77 16 35 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 37 H 0.12 5.45 5.64 -2.91 -0.02 5.44 16 38 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.13 0.59 6.05 -2.39 -0.01 0.58 16 42 H 0.14 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -87.56 360.95 3.88 -83.68 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 1.03 Total: 22.00 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 5.91 Total: -23.43 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -2.18 Total: -73.24 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -2.90 Total: -55.38 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -87.56 3.88 -83.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807924300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.351 kcal (2) G-P(sol) polarization free energy of solvation -87.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds