Wall clock time and date at job start Tue Mar 31 2020 05:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35655 * 116.99652 * 2 1 4 4 C 1.38716 * 120.15262 * 0.23279 * 3 2 1 5 5 C 1.38053 * 120.08562 * 180.28023 * 4 3 2 6 6 C 1.50694 * 119.80722 * 179.76426 * 5 4 3 7 7 O 1.42895 * 109.46916 * 269.97852 * 6 5 4 8 8 C 1.38551 * 120.38617 * 359.73563 * 5 4 3 9 9 C 1.37779 * 120.30548 * 0.02562 * 8 5 4 10 10 C 1.39712 * 119.90718 * 359.97438 * 9 8 5 11 11 C 1.47537 * 120.19188 * 179.97438 * 10 9 8 12 12 O 1.21590 * 120.00050 * 173.14366 * 11 10 9 13 13 N 1.34773 * 120.00069 * 353.14824 * 11 10 9 14 14 C 1.47429 * 125.64899 * 185.68379 * 13 11 10 15 15 C 1.55387 * 104.87423 * 204.16459 * 14 13 11 16 16 C 1.55152 * 101.36785 * 323.02007 * 15 14 13 17 17 O 1.42901 * 110.72122 * 277.04090 * 16 15 14 18 18 C 1.50707 * 110.72251 * 153.94497 * 16 15 14 19 19 H 1.07995 * 119.99771 * 2.89395 * 18 16 15 20 20 C 1.37874 * 119.99903 * 182.89020 * 18 16 15 21 21 N 1.31512 * 120.00292 * 4.61241 * 20 18 16 22 22 Si 1.86807 * 119.99590 * 184.60841 * 20 18 16 23 23 H 1.48495 * 109.46801 * 84.99021 * 22 20 18 24 24 H 1.48501 * 109.46810 * 204.98592 * 22 20 18 25 25 H 1.48493 * 109.47252 * 324.98544 * 22 20 18 26 26 C 1.47022 * 125.64985 * 5.72330 * 13 11 10 27 27 H 1.09001 * 109.46515 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47469 * 299.99942 * 1 2 3 29 29 H 1.08997 * 109.47613 * 60.00105 * 1 2 3 30 30 H 1.08001 * 119.95357 * 0.04206 * 4 3 2 31 31 H 1.09006 * 109.46892 * 29.97246 * 6 5 4 32 32 H 1.08997 * 109.47664 * 149.97795 * 6 5 4 33 33 H 0.96704 * 114.00335 * 180.02562 * 7 6 5 34 34 H 1.08002 * 119.84608 * 179.97438 * 8 5 4 35 35 H 1.08001 * 120.04842 * 180.02562 * 9 8 5 36 36 H 1.08992 * 110.36517 * 323.00051 * 14 13 11 37 37 H 1.08999 * 110.36490 * 85.21786 * 14 13 11 38 38 H 1.08998 * 111.18810 * 204.97781 * 15 14 13 39 39 H 1.09006 * 111.01956 * 80.98294 * 15 14 13 40 40 H 0.96696 * 114.00287 * 171.82248 * 17 16 15 41 41 H 0.97004 * 119.99922 * 179.97438 * 21 20 18 42 42 H 1.09007 * 109.87805 * 59.49091 * 26 13 11 43 43 H 1.08997 * 109.88455 * 298.32718 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2923 2.3741 0.0049 5 6 1.9204 3.6034 -0.0010 6 6 1.0968 4.8654 -0.0010 7 8 0.8314 5.2609 -1.3482 8 6 3.3036 3.6838 -0.0062 9 6 4.0666 2.5366 -0.0062 10 6 3.4440 1.2858 -0.0003 11 6 4.2550 0.0533 -0.0008 12 8 3.7164 -1.0289 0.1300 13 7 5.5928 0.1270 -0.1461 14 6 6.5068 -1.0217 -0.2827 15 6 7.8861 -0.4936 0.2003 16 6 7.8640 0.9599 -0.3420 17 8 8.2628 0.9938 -1.7138 18 6 8.7477 1.8531 0.4903 19 1 9.3222 1.4369 1.3046 20 6 8.8226 3.2014 0.2121 21 7 8.0556 3.7242 -0.7195 22 14 10.0135 4.2855 1.1587 23 1 11.3529 4.2241 0.5205 24 1 9.5233 5.6872 1.1468 25 1 10.1109 3.8070 2.5611 26 6 6.3826 1.3661 -0.1939 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2137 2.3195 0.0094 31 1 0.1548 4.6844 0.5167 32 1 1.6453 5.6574 0.5088 33 1 0.3046 6.0682 -1.4247 34 1 3.7858 4.6501 -0.0112 35 1 5.1445 2.6040 -0.0099 36 1 6.1754 -1.8471 0.3471 37 1 6.5642 -1.3391 -1.3239 38 1 8.7031 -1.0634 -0.2423 39 1 7.9493 -0.5037 1.2885 40 1 8.1473 1.8562 -2.1358 41 1 8.1081 4.6729 -0.9149 42 1 6.2434 1.9302 0.7285 43 1 6.0761 1.9684 -1.0490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911526867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:28 Heat of formation + Delta-G solvation = -138.129132 kcal Electronic energy + Delta-G solvation = -28058.904176 eV Core-core repulsion = 24069.705582 eV Total energy + Delta-G solvation = -3989.198595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.85579 -40.53503 -38.92898 -38.78328 -37.26786 -35.97169 -34.21407 -33.43303 -31.60059 -31.23910 -29.64152 -28.45607 -27.56185 -26.91166 -24.54483 -23.37305 -22.58804 -21.54159 -20.91761 -19.10821 -18.57141 -18.39461 -18.14133 -17.69033 -17.13510 -16.86318 -16.65692 -16.34464 -16.08688 -15.86982 -15.35162 -15.03615 -14.83274 -14.80874 -14.46545 -14.29626 -14.09995 -13.72096 -13.46580 -13.41435 -13.24406 -12.82278 -12.73470 -12.64159 -12.39487 -12.33328 -12.24111 -12.13216 -11.99051 -11.80291 -11.06118 -10.99822 -10.95838 -10.60526 -10.13050 -10.07745 -9.65005 -9.23575 -8.22060 -6.35937 -0.28106 0.34947 1.46149 1.50097 1.56992 1.76577 2.04807 2.28933 2.43014 2.69521 3.03401 3.36726 3.58655 3.72826 3.87175 3.97990 4.01576 4.06854 4.14020 4.25079 4.26689 4.31586 4.35819 4.46021 4.53213 4.55826 4.60748 4.68547 4.72025 4.82708 4.89978 5.01961 5.08690 5.24543 5.27773 5.30262 5.45085 5.49494 5.67539 5.77799 6.09133 6.36314 6.57481 6.68681 6.93341 7.15104 7.32839 7.39333 8.84521 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012079 B = 0.004770 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.535318 B = 5868.685836 C = 7714.974004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.168 3.832 4 C -0.200 4.200 5 C -0.032 4.032 6 C 0.118 3.882 7 O -0.587 6.587 8 C -0.152 4.152 9 C -0.092 4.092 10 C -0.194 4.194 11 C 0.563 3.437 12 O -0.571 6.571 13 N -0.614 5.614 14 C 0.111 3.889 15 C -0.111 4.111 16 C 0.232 3.768 17 O -0.587 6.587 18 C -0.559 4.559 19 H 0.062 0.938 20 C 0.040 3.960 21 N -0.907 5.907 22 Si 0.956 3.044 23 H -0.280 1.280 24 H -0.280 1.280 25 H -0.273 1.273 26 C 0.107 3.893 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.165 0.835 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.403 0.597 34 H 0.141 0.859 35 H 0.168 0.832 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.376 0.624 41 H 0.273 0.727 42 H 0.067 0.933 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.557 4.259 2.231 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.120 3.880 4 C -0.218 4.218 5 C -0.033 4.033 6 C 0.041 3.959 7 O -0.397 6.397 8 C -0.170 4.170 9 C -0.109 4.109 10 C -0.197 4.197 11 C 0.354 3.646 12 O -0.453 6.453 13 N -0.347 5.347 14 C -0.011 4.011 15 C -0.148 4.148 16 C 0.192 3.808 17 O -0.395 6.395 18 C -0.597 4.597 19 H 0.080 0.920 20 C -0.162 4.162 21 N -0.545 5.545 22 Si 0.782 3.218 23 H -0.206 1.206 24 H -0.205 1.205 25 H -0.198 1.198 26 C -0.015 4.015 27 H 0.132 0.868 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.183 0.817 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.254 0.746 34 H 0.159 0.841 35 H 0.185 0.815 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.225 0.775 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.413 2.487 2.211 15.769 hybrid contribution 0.258 1.698 0.289 1.741 sum -15.155 4.185 2.500 15.920 Atomic orbital electron populations 1.23467 0.76460 1.05644 1.02692 1.86333 1.23382 1.25905 1.86973 1.19153 0.90482 0.85753 0.92607 1.21303 1.01234 0.90293 1.08990 1.20056 0.93628 0.95131 0.94446 1.21083 0.98366 0.92247 0.84248 1.86528 1.77324 1.49546 1.26301 1.21166 0.93528 0.98692 1.03660 1.22980 1.03970 0.90912 0.93068 1.19415 0.91572 0.93793 1.14964 1.18134 0.80805 0.89023 0.76612 1.90696 1.71677 1.30393 1.52497 1.48679 1.05331 1.10045 1.70648 1.22303 0.89164 0.88904 1.00733 1.22827 0.95323 0.95932 1.00761 1.19755 0.88401 0.92219 0.80433 1.86156 1.88751 1.38002 1.26637 1.21726 1.27831 0.93477 1.16652 0.91995 1.25598 0.96214 0.98756 0.95657 1.69765 1.38406 1.14123 1.32246 0.85597 0.79227 0.77889 0.79048 1.20565 1.20487 1.19771 1.23160 0.93414 0.84735 1.00220 0.86771 0.90742 0.91234 0.81723 0.89770 0.90620 0.74641 0.84102 0.81523 0.90605 0.91938 0.89424 0.89851 0.77463 0.91718 0.91485 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.35 16 2 O -0.31 -10.79 8.60 -68.90 -0.59 -11.39 16 3 C 0.17 5.86 6.69 22.85 0.15 6.01 16 4 C -0.20 -5.35 8.67 22.34 0.19 -5.16 16 5 C -0.03 -0.84 5.51 -19.84 -0.11 -0.95 16 6 C 0.12 2.02 7.16 71.23 0.51 2.53 16 7 O -0.59 -10.94 13.64 -148.98 -2.03 -12.98 16 8 C -0.15 -4.77 9.67 22.24 0.22 -4.56 16 9 C -0.09 -3.47 8.61 22.52 0.19 -3.28 16 10 C -0.19 -7.83 5.89 -20.01 -0.12 -7.94 16 11 C 0.56 25.57 7.80 86.70 0.68 26.25 16 12 O -0.57 -28.08 15.42 16.80 0.26 -27.82 16 13 N -0.61 -27.16 3.33 -828.39 -2.76 -29.92 16 14 C 0.11 4.53 6.94 87.02 0.60 5.14 16 15 C -0.11 -4.54 6.26 32.15 0.20 -4.34 16 16 C 0.23 10.93 0.84 -10.35 -0.01 10.92 16 17 O -0.59 -28.97 13.07 -148.98 -1.95 -30.91 16 18 C -0.56 -27.94 8.11 25.60 0.21 -27.73 16 19 H 0.06 3.09 7.78 -2.91 -0.02 3.06 16 20 C 0.04 1.93 5.29 84.65 0.45 2.38 16 21 N -0.91 -44.09 11.02 21.45 0.24 -43.85 16 22 Si 0.96 39.44 29.54 68.60 2.03 41.46 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C 0.11 4.83 3.23 86.73 0.28 5.11 16 27 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.18 7.65 -2.39 -0.02 1.16 16 29 H 0.07 1.18 7.67 -2.39 -0.02 1.16 16 30 H 0.17 3.13 6.30 -2.91 -0.02 3.12 16 31 H 0.08 0.96 8.08 -2.38 -0.02 0.94 16 32 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.40 3.00 9.12 -74.05 -0.68 2.32 16 34 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.17 6.93 2.74 -8.22 -0.02 6.91 16 36 H 0.08 2.93 7.98 -2.39 -0.02 2.91 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 39 H 0.08 3.29 8.04 -2.38 -0.02 3.27 16 40 H 0.38 18.67 7.48 -74.06 -0.55 18.12 16 41 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 42 H 0.07 3.15 6.42 -2.38 -0.02 3.14 16 43 H 0.07 3.08 6.45 -2.39 -0.02 3.06 16 Total: -1.00 -67.27 351.00 -0.41 -67.68 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -0.17 Total: 42.00 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.56 Total: 5.72 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -2.52 Total: -73.77 kcal Atomic # 8 Polarization: -78.79 SS G_CDS: -4.31 Total: -83.10 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.46 kcal Total: -67.27 -0.41 -67.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.448 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds