Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.70184 * 2 1 4 4 C 1.52765 * 109.50989 * 239.88167 * 2 1 3 5 5 C 1.53041 * 109.38219 * 185.70730 * 4 2 1 6 6 H 1.09006 * 109.44498 * 301.22485 * 5 4 2 7 7 N 1.46504 * 109.45894 * 181.26250 * 5 4 2 8 8 C 1.36931 * 119.99834 * 154.93002 * 7 5 4 9 9 H 1.08007 * 120.00475 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99935 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99873 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00053 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46770 * 90.00365 * 12 10 8 14 14 H 1.48499 * 109.47236 * 209.99921 * 12 10 8 15 15 H 1.48491 * 109.47345 * 330.00433 * 12 10 8 16 16 C 1.53037 * 109.53814 * 61.24091 * 5 4 2 17 17 C 1.53187 * 109.31392 * 298.63264 * 16 5 4 18 18 N 1.46920 * 109.58565 * 120.35454 * 2 1 3 19 19 C 1.34779 * 120.63420 * 353.42142 * 18 2 1 20 20 O 1.21595 * 119.99436 * 6.23032 * 19 18 2 21 21 C 1.47490 * 120.00132 * 186.22714 * 19 18 2 22 22 C 1.37805 * 126.77155 * 33.01825 * 21 19 18 23 23 O 1.33496 * 108.34269 * 179.97438 * 22 21 19 24 24 C 1.34893 * 109.88781 * 359.73050 * 23 22 21 25 25 C 1.46766 * 125.65828 * 180.27973 * 24 23 22 26 26 N 1.34781 * 120.00258 * 0.18487 * 25 24 23 27 27 O 1.21681 * 119.99998 * 180.19242 * 25 24 23 28 28 C 1.36062 * 108.68588 * 0.43980 * 24 23 22 29 29 H 1.08999 * 109.47127 * 303.18593 * 1 2 3 30 30 H 1.09001 * 109.46818 * 63.18421 * 1 2 3 31 31 H 1.09002 * 109.47250 * 183.18436 * 1 2 3 32 32 H 1.08997 * 109.56272 * 65.67155 * 4 2 1 33 33 H 1.08998 * 109.38710 * 305.63254 * 4 2 1 34 34 H 0.96999 * 119.99680 * 334.93365 * 7 5 4 35 35 H 0.97000 * 120.00275 * 179.97438 * 11 10 8 36 36 H 1.09005 * 109.49463 * 178.68531 * 16 5 4 37 37 H 1.08999 * 109.49720 * 58.58608 * 16 5 4 38 38 H 1.09004 * 109.58980 * 294.84755 * 17 16 5 39 39 H 1.08997 * 109.70622 * 174.49396 * 17 16 5 40 40 H 1.07997 * 125.83606 * 359.94854 * 22 21 19 41 41 H 0.97009 * 119.99626 * 0.02562 * 26 25 24 42 42 H 0.96996 * 120.00242 * 179.97438 * 26 25 24 43 43 H 1.07998 * 126.68510 * 179.83653 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2455 5 6 3.5639 -0.8462 -1.1726 6 1 4.0055 0.1477 -1.0995 7 7 4.0578 -1.5121 -2.3805 8 6 5.3419 -1.2969 -2.8044 9 1 5.9908 -0.6365 -2.2481 10 6 5.8102 -1.9282 -3.9485 11 7 5.0197 -2.7334 -4.6262 12 14 7.5617 -1.6341 -4.5273 13 1 8.4634 -2.6367 -3.9053 14 1 7.6229 -1.7629 -6.0054 15 1 7.9913 -0.2690 -4.1311 16 6 3.9523 -1.6687 0.0581 17 6 3.4644 -0.9520 1.3210 18 7 2.0225 -0.6995 1.1944 19 6 1.1673 -1.1070 2.1532 20 8 -0.0319 -0.9991 1.9838 21 6 1.6861 -1.6838 3.4076 22 6 2.8571 -1.3436 4.0496 23 8 2.9656 -2.0918 5.1498 24 6 1.8986 -2.9105 5.2551 25 6 1.6634 -3.8746 6.3364 26 7 2.5555 -3.9930 7.3397 27 8 0.6629 -4.5672 6.3269 28 6 1.0785 -2.6967 4.1907 29 1 -0.3633 0.5625 0.8600 30 1 -0.3633 0.4636 -0.9172 31 1 -0.3634 -1.0261 0.0571 32 1 1.7633 -0.1566 -2.1349 33 1 1.5964 -1.7169 -1.2942 34 1 3.4752 -2.1054 -2.8799 35 1 5.3467 -3.1743 -5.4259 36 1 5.0363 -1.7761 0.0966 37 1 3.4904 -2.6541 -0.0023 38 1 3.9929 -0.0050 1.4310 39 1 3.6506 -1.5777 2.1939 40 1 3.5662 -0.5991 3.7191 41 1 3.3529 -3.4407 7.3473 42 1 2.3998 -4.6300 8.0545 43 1 0.1442 -3.1979 3.9852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044685685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = -26.434947 kcal Electronic energy + Delta-G solvation = -27172.709491 eV Core-core repulsion = 23220.647070 eV Total energy + Delta-G solvation = -3952.062420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.19624 -40.33800 -39.53116 -37.42393 -34.61649 -34.37902 -33.78749 -32.44003 -31.98345 -30.21040 -29.28553 -27.13405 -24.68367 -24.29527 -23.73865 -22.87453 -21.47531 -21.13533 -20.07997 -19.52851 -18.24351 -17.33016 -17.14144 -17.00701 -16.82123 -15.99192 -15.92183 -15.20928 -14.87116 -14.73905 -14.62663 -14.04504 -13.78526 -13.73406 -13.48166 -13.35945 -13.25489 -12.88550 -12.53900 -12.17848 -12.10723 -11.62094 -11.47761 -10.95590 -10.89230 -10.86917 -10.83181 -10.50660 -10.35314 -10.27480 -10.23618 -9.89568 -9.75576 -9.20183 -9.05084 -8.92623 -8.49841 -7.02774 -5.81783 -3.11419 0.58873 1.40120 2.17784 2.69057 2.78278 3.10758 3.18339 3.38885 3.43910 3.46203 4.18733 4.28857 4.51937 4.53048 4.86063 5.01604 5.12341 5.17327 5.24593 5.28345 5.38540 5.42666 5.46336 5.57602 5.74864 5.79489 5.87156 5.98154 6.09235 6.13273 6.21257 6.30723 6.33257 6.40609 6.44335 6.49885 6.71815 6.82556 6.84607 6.99052 7.42860 7.63258 7.67689 8.16744 8.36169 9.47437 10.04809 10.39336 11.40662 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002954 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.400496 B = 9475.471657 C =10575.340203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.073 0.927 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.094 3.906 18 N -0.596 5.596 19 C 0.584 3.416 20 O -0.527 6.527 21 C -0.230 4.230 22 C 0.042 3.958 23 O -0.155 6.155 24 C -0.095 4.095 25 C 0.613 3.387 26 N -0.844 5.844 27 O -0.520 6.520 28 C -0.061 4.061 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.225 0.775 41 H 0.407 0.593 42 H 0.410 0.590 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 3.886 22.412 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 H 0.091 0.909 4 C -0.176 4.176 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.192 4.192 17 C -0.029 4.029 18 N -0.329 5.329 19 C 0.372 3.628 20 O -0.406 6.406 21 C -0.234 4.234 22 C -0.031 4.031 23 O -0.049 6.049 24 C -0.146 4.146 25 C 0.397 3.603 26 N -0.407 5.407 27 O -0.397 6.397 28 C -0.082 4.082 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.241 0.759 41 H 0.236 0.764 42 H 0.241 0.759 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.310 3.633 22.302 23.003 hybrid contribution 1.348 -0.122 -0.440 1.423 sum -2.962 3.511 21.861 22.339 Atomic orbital electron populations 1.22225 0.92721 1.03803 1.00578 1.21259 0.95539 0.94945 0.83566 0.90897 1.22242 0.97580 1.01178 0.96552 1.20160 0.90951 0.94910 0.87087 0.93411 1.42431 1.12897 1.54653 1.26392 1.19214 0.89060 1.22528 1.06442 0.91174 1.24760 0.98142 0.99817 0.98160 1.69661 1.35304 1.33619 1.19335 0.86209 0.84564 0.77639 0.77869 1.21735 1.21773 1.20754 1.22680 1.01768 1.00185 0.94570 1.22207 0.79664 1.00544 1.00440 1.48075 1.07598 1.57132 1.20138 1.17267 0.85886 0.77699 0.81913 1.90859 1.15027 1.55328 1.79337 1.20853 0.97932 1.04170 1.00457 1.25367 0.97534 0.95468 0.84696 1.83904 1.40158 1.41313 1.39509 1.21765 0.90461 1.00823 1.01526 1.16477 0.82976 0.80604 0.80205 1.43670 1.25777 1.44654 1.26632 1.90957 1.27817 1.44216 1.76672 1.21878 0.99934 0.95437 0.90996 0.91410 0.93684 0.90996 0.90446 0.91693 0.78218 0.93444 0.90504 0.92061 0.91137 0.90148 0.75857 0.76356 0.75853 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.58 37.16 0.28 -1.62 16 2 C 0.15 2.05 3.48 -67.82 -0.24 1.81 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.19 4.81 -26.83 -0.13 -2.32 16 5 C 0.18 3.26 2.73 -67.89 -0.19 3.08 16 6 H 0.05 0.87 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -17.30 5.12 -53.38 -0.27 -17.57 16 8 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 9 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 12 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.15 -2.37 5.66 -26.62 -0.15 -2.52 16 17 C 0.09 1.08 5.28 -3.71 -0.02 1.06 16 18 N -0.60 -7.74 2.98 -166.71 -0.50 -8.24 16 19 C 0.58 8.10 7.54 -12.49 -0.09 8.01 16 20 O -0.53 -8.71 12.46 5.28 0.07 -8.64 16 21 C -0.23 -2.64 5.47 -104.95 -0.57 -3.22 16 22 C 0.04 0.34 9.73 30.57 0.30 0.64 16 23 O -0.15 -1.28 10.33 6.17 0.06 -1.22 16 24 C -0.09 -0.97 7.09 -36.92 -0.26 -1.23 16 25 C 0.61 6.14 8.06 -12.81 -0.10 6.04 16 26 N -0.84 -4.67 8.87 30.28 0.27 -4.40 16 27 O -0.52 -7.13 17.68 5.21 0.09 -7.04 16 28 C -0.06 -0.73 10.54 -39.03 -0.41 -1.14 16 29 H 0.07 0.98 6.74 -51.93 -0.35 0.63 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.14 6.75 -51.93 -0.35 0.79 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.38 9.98 7.80 -40.82 -0.32 9.67 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.76 4.45 -51.93 -0.23 0.53 16 40 H 0.23 1.07 6.74 -52.49 -0.35 0.71 16 41 H 0.41 1.33 8.57 -40.82 -0.35 0.98 16 42 H 0.41 1.59 8.93 -40.82 -0.36 1.23 16 43 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -34.05 354.04 -6.74 -40.79 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.67 Total: 9.57 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.83 Total: 1.60 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.22 Total: -57.11 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.22 Total: -16.91 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.05 -6.74 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044685685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.360 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds