Wall clock time and date at job start Tue Mar 31 2020 04:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34865 * 119.10199 * 2 1 4 4 C 1.41660 * 119.33989 * 179.70336 * 3 2 1 5 5 O 1.22089 * 121.06628 * 180.29621 * 4 3 2 6 6 C 1.47099 * 117.86655 * 0.26856 * 4 3 2 7 7 C 1.47286 * 120.88675 * 179.97438 * 6 4 3 8 8 O 1.21620 * 119.99772 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00458 * 180.02562 * 7 6 4 10 10 C 1.46494 * 120.00179 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46420 * 34.97034 * 10 9 7 12 12 C 1.53044 * 109.45941 * 274.99610 * 10 9 7 13 13 C 1.53189 * 109.31599 * 178.61588 * 12 10 9 14 14 N 1.46928 * 108.77263 * 54.63300 * 13 12 10 15 15 C 1.36937 * 120.62482 * 126.37661 * 14 13 12 16 16 H 1.08005 * 119.99532 * 207.68538 * 15 14 13 17 17 C 1.38814 * 120.00686 * 27.67818 * 15 14 13 18 18 N 1.31614 * 119.99652 * 17.37192 * 17 15 14 19 19 Si 1.86801 * 120.00210 * 197.37555 * 17 15 14 20 20 H 1.48504 * 109.47035 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.46898 * 119.99749 * 19 17 15 22 22 H 1.48494 * 109.46867 * 240.00026 * 19 17 15 23 23 C 1.46921 * 118.74343 * 306.39045 * 14 13 12 24 24 C 1.53044 * 109.46261 * 154.92967 * 10 9 7 25 25 H 1.09007 * 109.49546 * 61.42854 * 24 10 9 26 26 O 1.42902 * 109.49735 * 301.33694 * 24 10 9 27 27 C 1.37991 * 118.23527 * 0.02562 * 6 4 3 28 28 N 1.34349 * 120.37186 * 359.97438 * 27 6 4 29 29 H 0.96996 * 118.80549 * 179.97438 * 28 27 6 30 30 H 1.09003 * 109.46819 * 90.00742 * 1 2 3 31 31 H 1.09004 * 109.46957 * 210.00230 * 1 2 3 32 32 H 1.08998 * 109.47405 * 330.00443 * 1 2 3 33 33 H 1.07997 * 120.32424 * 359.96706 * 3 2 1 34 34 H 0.97003 * 119.99812 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.49563 * 298.57032 * 12 10 9 36 36 H 1.09001 * 109.49489 * 58.63143 * 12 10 9 37 37 H 1.08994 * 109.59056 * 174.42653 * 13 12 10 38 38 H 1.09005 * 109.58558 * 294.70693 * 13 12 10 39 39 H 0.96991 * 120.00407 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.58825 * 173.39589 * 23 14 13 41 41 H 1.09004 * 109.58830 * 293.82882 * 23 14 13 42 42 H 0.96697 * 114.00081 * 179.97438 * 26 24 10 43 43 H 1.07995 * 119.81757 * 180.02562 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0064 5 8 4.2052 2.2327 0.0120 6 6 4.2725 -0.1133 0.0067 7 6 5.7436 -0.1848 0.0126 8 8 6.4020 0.8378 0.0168 9 7 6.3601 -1.3832 0.0123 10 6 7.8233 -1.4543 0.0187 11 1 8.2243 -0.6323 0.6117 12 6 8.3452 -1.3497 -1.4162 13 6 9.8765 -1.3896 -1.4027 14 7 10.3118 -2.5977 -0.6888 15 6 11.1805 -3.4793 -1.2746 16 1 11.1615 -4.5224 -0.9953 17 6 12.0856 -3.0324 -2.2276 18 7 12.3550 -1.7480 -2.3279 19 14 12.9209 -4.2538 -3.3677 20 1 12.4502 -5.6267 -3.0528 21 1 12.5849 -3.9257 -4.7764 22 1 14.3921 -4.1802 -3.1795 23 6 9.7970 -2.8422 0.6654 24 6 8.2665 -2.7861 0.6287 25 1 7.8867 -3.6083 0.0221 26 8 7.7531 -2.8963 1.9577 27 6 3.5077 -1.2618 0.0002 28 7 2.1664 -1.1848 -0.0056 29 1 1.6511 -2.0065 -0.0105 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6136 2.1082 -0.0005 34 1 5.8350 -2.1988 0.0085 35 1 7.9647 -2.1854 -2.0035 36 1 8.0091 -0.4117 -1.8581 37 1 10.2505 -1.4151 -2.4261 38 1 10.2606 -0.5045 -0.8953 39 1 12.9876 -1.4357 -2.9935 40 1 10.1184 -3.8263 1.0064 41 1 10.1745 -2.0769 1.3436 42 1 7.9952 -3.7182 2.4060 43 1 3.9899 -2.2281 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090696607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:52 Heat of formation + Delta-G solvation = -62.730214 kcal Electronic energy + Delta-G solvation = -27247.967191 eV Core-core repulsion = 23294.330890 eV Total energy + Delta-G solvation = -3953.636301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18282 -39.39579 -38.00792 -37.38180 -35.38513 -34.23464 -33.61810 -32.05559 -31.37992 -29.92477 -28.73128 -28.05363 -25.17174 -24.23576 -22.63238 -22.28703 -21.87143 -20.61025 -19.71187 -18.74904 -17.68576 -17.11714 -16.59474 -16.35347 -16.15228 -15.62249 -15.47765 -14.85219 -14.69557 -14.32319 -13.99699 -13.87315 -13.51523 -13.46504 -13.27812 -13.22862 -13.06724 -12.98759 -12.68531 -12.50993 -12.21528 -11.98667 -11.53196 -11.08998 -10.87912 -10.61823 -10.27812 -10.22450 -9.93563 -9.82771 -9.76199 -9.70525 -9.51847 -9.09226 -8.67387 -8.42722 -8.20979 -6.74861 -5.82460 -3.26694 0.67782 1.09123 2.36218 3.13443 3.34468 3.40970 3.42253 3.44610 3.87109 3.89977 4.19465 4.38533 4.44692 4.54288 4.68571 4.80675 4.81929 5.17019 5.22439 5.32319 5.35088 5.44672 5.51663 5.59550 5.61051 5.80769 6.01858 6.11695 6.19665 6.39101 6.40845 6.50899 6.52048 6.60961 6.73511 6.82124 6.97456 7.34076 7.65979 7.75184 7.87053 7.92955 8.10295 8.39933 8.67617 9.15320 9.77988 10.34137 11.26025 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.002802 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.005542 B = 9989.677335 C =10206.555441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 C -0.268 4.268 4 C 0.405 3.595 5 O -0.475 6.475 6 C -0.289 4.289 7 C 0.567 3.433 8 O -0.510 6.510 9 N -0.721 5.721 10 C 0.165 3.835 11 H 0.088 0.912 12 C -0.146 4.146 13 C 0.170 3.830 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.897 5.897 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.121 3.879 24 C 0.081 3.919 25 H 0.055 0.945 26 O -0.571 6.571 27 C 0.168 3.832 28 N -0.580 5.580 29 H 0.420 0.580 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.151 0.849 34 H 0.386 0.614 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.255 0.745 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.372 0.628 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.754 -5.136 5.093 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.045 3.955 3 C -0.293 4.293 4 C 0.291 3.709 5 O -0.355 6.355 6 C -0.300 4.300 7 C 0.353 3.647 8 O -0.384 6.384 9 N -0.373 5.373 10 C 0.061 3.939 11 H 0.106 0.894 12 C -0.187 4.187 13 C 0.044 3.956 14 N -0.312 5.312 15 C -0.388 4.388 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.541 5.541 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.217 1.217 23 C -0.007 4.007 24 C 0.020 3.980 25 H 0.073 0.927 26 O -0.375 6.375 27 C 0.037 3.963 28 N -0.187 5.187 29 H 0.256 0.744 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.169 0.831 34 H 0.220 0.780 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.218 0.782 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -26.030 -3.081 4.845 26.655 hybrid contribution 0.214 -2.109 -0.502 2.179 sum -25.816 -5.191 4.342 26.688 Atomic orbital electron populations 1.21087 0.87969 1.04823 1.04302 1.20257 0.94717 0.85556 0.94962 1.22276 0.96333 0.97310 1.13348 1.18189 0.88240 0.88015 0.76505 1.90842 1.69931 1.33210 1.41518 1.22658 0.94801 0.95070 1.17459 1.17468 0.85941 0.83909 0.77333 1.90868 1.65728 1.33900 1.47948 1.45994 1.07912 1.07156 1.76190 1.20970 0.78027 0.97365 0.97508 0.89351 1.22599 1.00819 1.01144 0.94093 1.20835 0.87073 0.88005 0.99650 1.44059 1.51537 1.25097 1.10544 1.19184 1.10983 0.89304 1.19376 0.91533 1.25080 0.96932 0.95940 1.01534 1.70045 1.35599 1.12908 1.35545 0.86216 0.78996 0.80604 0.80872 1.20278 1.21475 1.21657 1.21522 0.90245 0.99626 0.89312 1.22785 0.96658 0.96333 0.82253 0.92729 1.86499 1.77572 1.44537 1.28883 1.22202 0.82534 1.00018 0.91543 1.40670 1.05895 1.08879 1.63245 0.74433 0.89281 0.90525 0.88791 0.83129 0.78021 0.92487 0.91783 0.88886 0.95729 0.93454 0.92230 0.95269 0.78154 0.81426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.21 10.02 36.01 0.36 0.15 16 2 C 0.15 0.88 6.79 -82.13 -0.56 0.32 16 3 C -0.27 -2.75 9.57 -39.47 -0.38 -3.12 16 4 C 0.41 6.45 6.96 -34.68 -0.24 6.21 16 5 O -0.47 -10.14 16.41 -15.18 -0.25 -10.39 16 6 C -0.29 -4.03 6.05 -102.72 -0.62 -4.66 16 7 C 0.57 10.26 7.74 -12.58 -0.10 10.16 16 8 O -0.51 -12.08 15.24 -14.75 -0.22 -12.31 16 9 N -0.72 -11.17 4.87 -54.88 -0.27 -11.44 16 10 C 0.17 3.10 2.12 -67.89 -0.14 2.95 16 11 H 0.09 1.96 7.58 -51.93 -0.39 1.57 16 12 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 13 C 0.17 4.19 5.31 -3.71 -0.02 4.18 16 14 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 15 C -0.26 -6.95 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 17 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 18 N -0.90 -26.17 11.19 55.49 0.62 -25.55 16 19 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.12 2.47 6.14 -3.71 -0.02 2.45 16 24 C 0.08 1.37 3.14 -26.61 -0.08 1.28 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 O -0.57 -8.40 13.16 -35.23 -0.46 -8.86 16 27 C 0.17 1.26 10.74 -16.54 -0.18 1.08 16 28 N -0.58 -2.52 5.16 -9.00 -0.05 -2.57 16 29 H 0.42 0.02 8.70 -40.82 -0.36 -0.33 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.08 -0.01 8.12 -51.93 -0.42 -0.44 16 32 H 0.09 0.14 8.05 -51.93 -0.42 -0.27 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.39 4.41 6.68 -40.82 -0.27 4.13 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.09 2.53 6.03 -51.93 -0.31 2.21 16 38 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.37 3.84 9.08 45.56 0.41 4.25 16 43 H 0.17 0.69 6.42 -52.49 -0.34 0.35 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -41.00 356.37 -8.19 -49.18 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.02 Total: 4.51 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -2.36 Total: 10.80 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.21 Total: -54.64 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.94 Total: -31.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -41.00 -8.19 -49.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090696607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.548 kcal (2) G-P(sol) polarization free energy of solvation -40.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds