Wall clock time and date at job start Tue Mar 31 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99814 * 2 1 4 4 C 1.34779 * 120.00153 * 179.97438 * 2 1 3 5 5 O 1.21281 * 119.99696 * 0.02562 * 4 2 1 6 6 C 1.50703 * 119.99913 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.46850 * 180.02562 * 6 4 2 8 8 C 1.34778 * 119.99866 * 180.02562 * 7 6 4 9 9 O 1.21584 * 119.99654 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99808 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09002 * 109.46672 * 270.00106 * 1 2 3 28 28 H 1.08997 * 109.46954 * 29.99985 * 1 2 3 29 29 H 1.08998 * 109.46981 * 149.99985 * 1 2 3 30 30 H 1.09005 * 109.47095 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47247 * 299.99684 * 3 2 1 32 32 H 1.08997 * 109.47440 * 60.00396 * 3 2 1 33 33 H 1.08994 * 109.47250 * 59.99772 * 6 4 2 34 34 H 1.09002 * 109.46511 * 299.99669 * 6 4 2 35 35 H 0.96996 * 120.00042 * 359.97438 * 7 6 4 36 36 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 38 38 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6460 -1.1671 0.0011 7 7 4.1343 -2.5484 0.0010 8 6 5.4594 -2.7946 0.0020 9 8 6.2494 -1.8704 0.0025 10 7 5.9086 -4.0652 0.0024 11 6 7.3490 -4.3330 0.0029 12 6 7.5832 -5.8216 0.0039 13 6 7.6908 -6.5041 -1.1941 14 6 7.9059 -7.8682 -1.1966 15 6 8.0138 -8.5548 0.0058 16 8 8.2258 -9.8957 0.0067 17 6 8.4367 -10.4828 -1.1886 18 1 8.3511 -9.9048 -2.0968 19 6 8.7635 -11.8289 -1.2517 20 7 8.8683 -12.5330 -0.1453 21 14 9.0564 -12.6422 -2.9076 22 1 10.1839 -11.9665 -3.5985 23 1 9.3889 -14.0751 -2.7035 24 1 7.8298 -12.5316 -3.7373 25 6 7.8990 -7.8677 1.2072 26 6 7.6896 -6.5027 1.2029 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 3.2692 1.0696 0.0005 31 1 1.9342 1.8403 -0.8900 32 1 1.9342 1.8403 0.8900 33 1 4.0089 -0.6531 0.8910 34 1 4.0095 -0.6535 -0.8889 35 1 3.5040 -3.2856 0.0010 36 1 5.2783 -4.8026 0.0023 37 1 7.7998 -3.8940 0.8929 38 1 7.8004 -3.8945 -0.8871 39 1 7.6072 -5.9696 -2.1288 40 1 7.9902 -8.4005 -2.1325 41 1 9.0965 -13.4747 -0.1895 42 1 7.9780 -8.3996 2.1438 43 1 7.6047 -5.9670 2.1369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069317153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:25 Heat of formation + Delta-G solvation = -82.861686 kcal Electronic energy + Delta-G solvation = -25331.137335 eV Core-core repulsion = 21376.628068 eV Total energy + Delta-G solvation = -3954.509267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47227 -40.88250 -40.42003 -38.52626 -36.71848 -35.75429 -35.42974 -34.26951 -31.84702 -31.56838 -30.05094 -28.29526 -27.59921 -26.56680 -25.52729 -23.63804 -22.22203 -21.91802 -20.70534 -19.89365 -19.61043 -18.84297 -17.94437 -17.57889 -17.30939 -16.70111 -16.63179 -16.36542 -16.15965 -15.92391 -15.55875 -15.25005 -15.21213 -14.96642 -14.73123 -14.37851 -14.22067 -14.10857 -13.75750 -13.57438 -13.37728 -13.34796 -13.16013 -13.01397 -12.87288 -12.52560 -12.36797 -12.23038 -12.13200 -11.45411 -11.20065 -11.12249 -10.79851 -10.43118 -9.85505 -9.79621 -9.73629 -9.01417 -8.47962 -6.16264 0.52844 0.58755 1.35724 1.39007 1.44619 1.51623 1.56697 2.13016 2.13676 2.17503 2.80956 3.12890 3.35748 3.42733 3.49937 3.89672 4.04944 4.18510 4.23094 4.29905 4.32097 4.42965 4.49303 4.52602 4.57903 4.76290 4.76759 4.82263 4.92088 4.94860 5.05299 5.14831 5.27481 5.28376 5.41152 5.48290 5.53437 5.69651 5.76620 5.94655 6.01631 6.17270 6.18574 6.92259 6.96624 7.02700 7.53069 7.75992 8.74586 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.001882 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.799566 B =14873.690805 C =15340.939789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.615 5.615 3 C 0.064 3.936 4 C 0.505 3.495 5 O -0.576 6.576 6 C 0.124 3.876 7 N -0.735 5.735 8 C 0.707 3.293 9 O -0.627 6.627 10 N -0.731 5.731 11 C 0.204 3.796 12 C -0.182 4.182 13 C -0.045 4.045 14 C -0.245 4.245 15 C 0.122 3.878 16 O -0.229 6.229 17 C -0.415 4.415 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.206 4.206 26 C -0.043 4.043 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.410 0.590 36 H 0.406 0.594 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 28.332 -1.454 31.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.348 5.348 3 C -0.078 4.078 4 C 0.293 3.707 5 O -0.456 6.456 6 C -0.004 4.004 7 N -0.394 5.394 8 C 0.407 3.593 9 O -0.509 6.509 10 N -0.386 5.386 11 C 0.081 3.919 12 C -0.183 4.183 13 C -0.063 4.063 14 C -0.264 4.264 15 C 0.071 3.929 16 O -0.135 6.135 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.225 4.225 26 C -0.061 4.061 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.247 0.753 36 H 0.241 0.759 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.158 0.842 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.159 28.295 -1.202 31.228 hybrid contribution -0.401 -1.607 -0.447 1.716 sum -13.560 26.688 -1.649 29.980 Atomic orbital electron populations 1.21777 0.77982 1.03803 1.02571 1.47815 1.08078 1.06638 1.72249 1.22223 0.97676 0.83722 1.04174 1.20784 0.90295 0.83839 0.75806 1.90700 1.70620 1.32477 1.51818 1.21008 0.89694 0.84024 1.05667 1.44771 1.05381 1.09043 1.80191 1.15878 0.82201 0.83535 0.77676 1.90889 1.55756 1.44214 1.60044 1.45269 1.08673 1.05721 1.78953 1.19755 0.79439 0.90062 1.02620 1.19513 1.10868 0.95099 0.92863 1.20958 0.94746 0.92156 0.98467 1.21254 1.11732 0.96075 0.97356 1.20004 0.93315 0.84153 0.95406 1.83945 1.79123 1.16838 1.33637 1.21796 1.49461 0.94155 0.83637 0.87918 1.26590 0.95823 0.95897 1.03679 1.70172 1.46654 1.08962 1.29843 0.84656 0.79705 0.77130 0.74804 1.18183 1.19714 1.18139 1.20454 1.11459 0.95197 0.95390 1.20898 0.95022 0.91611 0.98581 0.92091 0.88122 0.92309 0.89277 0.89745 0.89919 0.87314 0.87326 0.75290 0.75859 0.90801 0.91038 0.84241 0.86176 0.91809 0.86700 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.48 127.77 1.34 2.06 16 2 N -0.62 -6.59 3.27 -871.88 -2.85 -9.44 16 3 C 0.06 0.20 10.60 127.77 1.35 1.56 16 4 C 0.50 8.53 7.74 87.66 0.68 9.20 16 5 O -0.58 -14.23 15.25 -3.03 -0.05 -14.27 16 6 C 0.12 1.89 4.47 85.63 0.38 2.27 16 7 N -0.74 -14.67 5.53 -482.30 -2.67 -17.34 16 8 C 0.71 17.35 8.57 179.06 1.53 18.88 16 9 O -0.63 -19.08 16.34 -3.98 -0.07 -19.14 16 10 N -0.73 -16.63 5.55 -482.31 -2.68 -19.31 16 11 C 0.20 5.00 5.80 85.63 0.50 5.50 16 12 C -0.18 -5.30 5.25 -19.84 -0.10 -5.41 16 13 C -0.04 -1.45 9.69 22.25 0.22 -1.24 16 14 C -0.24 -10.22 9.17 22.39 0.21 -10.01 16 15 C 0.12 5.90 6.65 22.58 0.15 6.05 16 16 O -0.23 -13.57 9.76 -22.72 -0.22 -13.80 16 17 C -0.41 -23.77 9.49 67.92 0.64 -23.13 16 18 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 19 C -0.02 -1.24 5.49 84.84 0.47 -0.77 16 20 N -0.92 -55.93 13.67 21.62 0.30 -55.63 16 21 Si 1.02 42.39 29.55 68.60 2.03 44.42 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 25 C -0.21 -8.39 9.99 22.39 0.22 -8.16 16 26 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.31 8.07 -2.39 -0.02 0.29 16 29 H 0.06 0.78 7.42 -2.39 -0.02 0.76 16 30 H 0.09 0.22 5.77 -2.38 -0.01 0.21 16 31 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.11 1.42 7.79 -2.39 -0.02 1.40 16 34 H 0.11 1.42 7.79 -2.39 -0.02 1.40 16 35 H 0.41 8.11 7.45 -92.71 -0.69 7.42 16 36 H 0.41 8.38 8.48 -92.71 -0.79 7.59 16 37 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -78.96 370.01 1.18 -77.78 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.41 Total: 31.07 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 7.80 Total: -4.33 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -7.91 Total: -101.72 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.33 Total: -47.21 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -78.96 1.18 -77.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069317153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.081 kcal (2) G-P(sol) polarization free energy of solvation -78.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds