Wall clock time and date at job start Tue Mar 31 2020 04:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35577 * 118.80465 * 2 1 4 4 C 1.34870 * 121.79864 * 180.02562 * 3 2 1 5 5 C 1.41670 * 119.33901 * 359.97438 * 4 3 2 6 6 O 1.22084 * 121.06872 * 179.97438 * 5 4 3 7 7 C 1.47096 * 117.86215 * 0.02562 * 5 4 3 8 8 C 1.47286 * 120.88144 * 180.02562 * 7 5 4 9 9 O 1.21624 * 119.99934 * 359.97438 * 8 7 5 10 10 N 1.34777 * 120.00317 * 179.72740 * 8 7 5 11 11 C 1.46496 * 120.00344 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47401 * 179.97438 * 11 10 8 13 13 H 1.08997 * 110.88623 * 51.11290 * 12 11 10 14 14 C 1.54911 * 110.99894 * 287.19500 * 12 11 10 15 15 N 1.47427 * 104.82833 * 204.91294 * 14 12 11 16 16 C 1.36936 * 125.64651 * 204.17008 * 15 14 12 17 17 H 1.07995 * 120.00461 * 359.97438 * 16 15 14 18 18 C 1.38817 * 119.99558 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00158 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99606 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47654 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47509 * 120.00171 * 20 18 16 23 23 H 1.48510 * 109.47091 * 239.99785 * 20 18 16 24 24 C 1.47027 * 108.70142 * 24.13160 * 15 14 12 25 25 C 1.54317 * 107.27065 * 358.93676 * 24 15 14 26 26 H 1.08998 * 110.87381 * 219.37273 * 25 24 15 27 27 O 1.42897 * 110.72035 * 96.17517 * 25 24 15 28 28 C 1.34350 * 118.80107 * 180.28129 * 2 1 3 29 29 H 1.08997 * 109.47437 * 90.00134 * 1 2 3 30 30 H 1.09006 * 109.47294 * 210.00374 * 1 2 3 31 31 H 1.08996 * 109.46781 * 329.99698 * 1 2 3 32 32 H 1.07997 * 119.10299 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.32923 * 180.02562 * 4 3 2 34 34 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 35 35 H 1.09007 * 109.47081 * 299.99675 * 11 10 8 36 36 H 1.08993 * 109.47302 * 59.99555 * 11 10 8 37 37 H 1.09003 * 110.36970 * 323.74960 * 14 12 11 38 38 H 1.08998 * 110.37022 * 86.07363 * 14 12 11 39 39 H 0.97004 * 119.99715 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.87578 * 239.51746 * 24 15 14 41 41 H 1.09000 * 110.00937 * 118.43020 * 24 15 14 42 42 H 0.96700 * 114.00361 * 66.47590 * 27 25 24 43 43 H 1.07994 * 119.82035 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1880 0.0000 4 6 3.4651 1.2585 -0.0005 5 6 4.2228 0.0614 -0.0005 6 8 5.4434 0.0884 -0.0014 7 6 3.4917 -1.2150 -0.0005 8 6 4.2128 -2.4992 0.0000 9 8 5.4289 -2.5138 0.0000 10 7 3.5250 -3.6583 0.0056 11 6 4.2423 -4.9357 0.0067 12 6 3.2342 -6.0867 0.0139 13 1 2.4943 -5.9602 -0.7764 14 6 2.5520 -6.2185 1.3985 15 7 2.1243 -7.6272 1.4758 16 6 1.1078 -8.1109 2.2555 17 1 0.5433 -7.4390 2.8848 18 6 0.8031 -9.4651 2.2369 19 7 1.4907 -10.2839 1.4695 20 14 -0.5840 -10.1249 3.3000 21 1 -1.1964 -9.0084 4.0638 22 1 -1.6128 -10.7567 2.4354 23 1 -0.0450 -11.1345 4.2464 24 6 2.9692 -8.4265 0.5764 25 6 3.9527 -7.4561 -0.1109 26 1 4.0940 -7.7234 -1.1582 27 8 5.2052 -7.4345 0.5767 28 6 2.1123 -1.1773 -0.0058 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.5445 2.1030 0.0004 33 1 3.9611 2.2179 -0.0001 34 1 2.5551 -3.6467 0.0095 35 1 4.8652 -5.0034 -0.8853 36 1 4.8712 -4.9985 0.8946 37 1 3.2621 -5.9934 2.1943 38 1 1.6888 -5.5559 1.4607 39 1 1.2775 -11.2302 1.4563 40 1 2.3500 -8.9194 -0.1731 41 1 3.5223 -9.1715 1.1483 42 1 5.6945 -8.2672 0.5291 43 1 1.5500 -2.0993 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958249607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:59 Heat of formation + Delta-G solvation = -45.545815 kcal Electronic energy + Delta-G solvation = -26898.293062 eV Core-core repulsion = 22945.401932 eV Total energy + Delta-G solvation = -3952.891130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27945 -39.29310 -38.28227 -37.71447 -34.84186 -34.48462 -32.89860 -32.57146 -31.77736 -29.54782 -27.78911 -27.29488 -25.70204 -24.81239 -23.53306 -22.71917 -20.87953 -20.19296 -19.77830 -18.25365 -17.70782 -17.29618 -17.00151 -16.40415 -16.14488 -15.84473 -15.25273 -14.90851 -14.85707 -14.75079 -14.10111 -13.87828 -13.79522 -13.67706 -13.52162 -13.19047 -12.98086 -12.69584 -12.62517 -12.58175 -12.33765 -11.83767 -11.38664 -11.24863 -10.86409 -10.63633 -10.47832 -10.10644 -10.05268 -10.01069 -9.88040 -9.80301 -9.24294 -9.13917 -8.79042 -8.69777 -8.18454 -6.89436 -5.77986 -3.11035 0.63522 1.07060 2.04671 3.04045 3.29885 3.34643 3.40072 3.42779 3.80742 3.83711 4.10372 4.32065 4.43040 4.52054 4.56737 4.73118 4.80415 4.84356 5.07982 5.15186 5.31343 5.35502 5.43551 5.48501 5.53615 5.61052 5.92920 6.03253 6.10681 6.16913 6.23941 6.41014 6.42753 6.43922 6.51573 6.70336 6.89975 7.37324 7.46360 7.70814 7.71710 8.03648 8.17684 8.26110 8.52181 9.14815 9.75666 10.41694 11.34020 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.002996 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.139684 B = 9344.262750 C =10810.024512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.476 5.476 3 C 0.125 3.875 4 C -0.267 4.267 5 C 0.405 3.595 6 O -0.478 6.478 7 C -0.295 4.295 8 C 0.569 3.431 9 O -0.513 6.513 10 N -0.732 5.732 11 C 0.143 3.857 12 C -0.109 4.109 13 H 0.087 0.913 14 C 0.145 3.855 15 N -0.603 5.603 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.153 3.847 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.563 6.563 28 C 0.171 3.829 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.390 0.610 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.026 0.974 38 H 0.034 0.966 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.375 0.625 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 20.662 -6.306 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.163 5.163 3 C 0.002 3.998 4 C -0.291 4.291 5 C 0.290 3.710 6 O -0.359 6.359 7 C -0.306 4.306 8 C 0.355 3.645 9 O -0.388 6.388 10 N -0.385 5.385 11 C 0.020 3.980 12 C -0.129 4.129 13 H 0.106 0.894 14 C 0.019 3.981 15 N -0.330 5.330 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.028 3.972 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.368 6.368 28 C 0.040 3.960 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.224 0.776 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.222 0.778 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.929 21.083 -6.119 22.500 hybrid contribution -1.406 -1.114 0.420 1.842 sum -6.335 19.970 -5.699 21.712 Atomic orbital electron populations 1.22521 0.76000 1.05833 1.04474 1.42669 1.08680 1.04482 1.60438 1.21691 0.94322 0.88349 0.95484 1.22499 0.93145 1.01428 1.12040 1.18197 0.89326 0.86988 0.76475 1.90832 1.14316 1.88934 1.41788 1.22589 0.92208 0.97403 1.18377 1.17471 0.87246 0.82496 0.77295 1.90858 1.12918 1.86880 1.48097 1.46034 1.09687 1.06143 1.76653 1.21143 0.94068 0.79830 1.02934 1.22674 0.96837 0.93071 1.00271 0.89448 1.21584 0.95660 0.87873 0.92950 1.44389 1.37459 1.01328 1.49812 1.19107 1.06994 0.91934 1.17455 0.90368 1.24801 0.99744 0.96014 1.00001 1.69943 1.42021 1.03211 1.41967 0.86030 0.81323 0.78756 0.79542 1.20542 1.21778 1.21731 1.21848 0.91022 0.91251 0.93073 1.23117 0.84582 0.95669 0.94374 0.92549 1.86422 1.32952 1.39671 1.77803 1.22277 0.93258 0.89157 0.91279 0.89979 0.88709 0.88937 0.81886 0.82954 0.77575 0.91739 0.90341 0.95579 0.94756 0.93775 0.92991 0.93239 0.77798 0.81579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.03 10.52 59.85 0.63 0.66 16 2 N -0.48 -2.30 2.97 -124.39 -0.37 -2.67 16 3 C 0.13 0.65 10.17 -17.09 -0.17 0.47 16 4 C -0.27 -2.49 10.01 -39.47 -0.40 -2.89 16 5 C 0.40 6.05 6.96 -34.68 -0.24 5.81 16 6 O -0.48 -9.69 16.41 -15.17 -0.25 -9.94 16 7 C -0.29 -3.87 6.05 -102.72 -0.62 -4.49 16 8 C 0.57 9.43 7.77 -12.58 -0.10 9.33 16 9 O -0.51 -11.22 15.57 -14.76 -0.23 -11.45 16 10 N -0.73 -10.18 5.45 -61.43 -0.34 -10.52 16 11 C 0.14 2.34 4.60 -4.04 -0.02 2.32 16 12 C -0.11 -1.83 2.98 -88.47 -0.26 -2.09 16 13 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 14 C 0.15 2.91 6.64 -2.53 -0.02 2.90 16 15 N -0.60 -14.96 3.39 -170.07 -0.58 -15.54 16 16 C -0.23 -6.15 10.28 -15.06 -0.15 -6.30 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -26.42 10.31 55.49 0.57 -25.85 16 20 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.15 3.57 5.14 -3.06 -0.02 3.56 16 25 C 0.08 1.51 4.08 -24.90 -0.10 1.41 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 O -0.56 -10.11 12.24 -35.23 -0.43 -10.54 16 28 C 0.17 1.29 9.80 -16.54 -0.16 1.13 16 29 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.09 0.00 7.96 -51.93 -0.41 -0.41 16 31 H 0.09 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.16 0.13 7.97 -52.49 -0.42 -0.28 16 33 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.39 4.07 6.55 -40.82 -0.27 3.80 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.49 7.55 -51.93 -0.39 1.10 16 37 H 0.03 0.57 7.91 -51.93 -0.41 0.16 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 41 H 0.05 1.29 7.44 -51.93 -0.39 0.90 16 42 H 0.38 5.34 9.12 45.56 0.42 5.76 16 43 H 0.17 0.75 6.35 -52.49 -0.33 0.42 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -41.33 358.82 -8.05 -49.38 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.08 Total: 3.73 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -1.73 Total: 11.45 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.71 Total: -54.58 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.91 Total: -31.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -41.33 -8.05 -49.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958249607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.832 kcal (2) G-P(sol) polarization free energy of solvation -41.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds