Wall clock time and date at job start Tue Mar 31 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48497 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46946 * 299.99993 * 3 2 1 6 6 H 1.48497 * 109.47282 * 59.99668 * 3 2 1 7 7 C 1.38807 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00038 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99730 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64584 * 179.97438 * 9 7 2 11 11 C 1.54326 * 107.27162 * 178.90196 * 10 9 7 12 12 H 1.08999 * 110.71752 * 96.34664 * 11 10 9 13 13 N 1.46500 * 110.72302 * 219.44316 * 11 10 9 14 14 C 1.34778 * 120.00277 * 271.16286 * 13 11 10 15 15 O 1.21285 * 119.99699 * 359.97438 * 14 13 11 16 16 C 1.50695 * 120.00092 * 180.02562 * 14 13 11 17 17 H 1.09002 * 109.69045 * 299.99490 * 16 14 13 18 18 C 1.53437 * 109.69070 * 179.44983 * 16 14 13 19 19 C 1.53108 * 109.55025 * 190.52468 * 18 16 14 20 20 C 1.53421 * 109.58229 * 70.05810 * 19 18 16 21 21 C 1.50595 * 108.33282 * 310.16950 * 20 19 18 22 22 N 1.32903 * 129.16660 * 196.56766 * 21 20 19 23 23 N 1.29021 * 108.64188 * 179.85549 * 22 21 20 24 24 N 1.29114 * 110.25316 * 0.03140 * 23 22 21 25 25 H 0.97004 * 126.00467 * 180.02562 * 24 23 22 26 26 C 1.34393 * 107.98670 * 0.06637 * 24 23 22 27 27 C 1.55149 * 103.10030 * 337.90017 * 11 10 9 28 28 H 1.08996 * 111.00523 * 153.48978 * 27 11 10 29 29 O 1.42903 * 111.00487 * 277.33388 * 27 11 10 30 30 C 1.47419 * 125.65033 * 359.95649 * 9 7 2 31 31 H 0.96998 * 119.99761 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.88079 * 59.48543 * 10 9 7 33 33 H 1.08998 * 110.01138 * 298.39785 * 10 9 7 34 34 H 0.97003 * 119.99555 * 91.15331 * 13 11 10 35 35 H 1.08998 * 109.45897 * 310.54529 * 18 16 14 36 36 H 1.09000 * 109.45431 * 70.51633 * 18 16 14 37 37 H 1.09008 * 109.45270 * 190.09144 * 19 18 16 38 38 H 1.09000 * 109.45783 * 310.01883 * 19 18 16 39 39 H 1.08995 * 109.69019 * 69.88113 * 20 19 18 40 40 H 1.08998 * 109.68884 * 190.46538 * 20 19 18 41 41 H 0.96698 * 114.00801 * 179.97438 * 29 27 11 42 42 H 1.09003 * 110.36685 * 323.00020 * 30 9 7 43 43 H 1.08997 * 110.36767 * 85.32574 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.9317 -3.7275 0.0005 11 6 0.7784 -4.7524 0.0288 12 1 0.5474 -5.1008 -0.9779 13 7 1.1090 -5.8809 0.9026 14 6 1.7587 -6.9514 0.4042 15 8 2.0692 -6.9807 -0.7678 16 6 2.0982 -8.1124 1.3030 17 1 2.7407 -7.7724 2.1153 18 6 2.8187 -9.1990 0.4940 19 6 2.9284 -10.4747 1.3335 20 6 1.5389 -11.1043 1.4963 21 6 0.5842 -10.0332 1.9538 22 7 -0.6209 -10.1602 2.4997 23 7 -1.0901 -8.9830 2.7418 24 7 -0.2424 -8.0802 2.3768 25 1 -0.3622 -7.1207 2.4547 26 6 0.8346 -8.7032 1.8689 27 6 -0.4044 -3.9349 0.6116 28 1 -1.3603 -4.3371 0.2761 29 8 -0.3425 -3.8904 2.0386 30 6 -0.1415 -2.5331 0.0009 31 1 -0.4850 0.8401 0.0004 32 1 2.5588 -3.8505 0.8836 33 1 2.5293 -3.8664 -0.9004 34 1 0.8603 -5.8575 1.8399 35 1 2.2544 -9.4096 -0.4144 36 1 3.8174 -8.8520 0.2289 37 1 3.5911 -11.1818 0.8344 38 1 3.3332 -10.2295 2.3154 39 1 1.2053 -11.5100 0.5412 40 1 1.5812 -11.9004 2.2396 41 1 -1.0612 -3.3897 2.4482 42 1 -0.5992 -1.7584 0.6161 43 1 -0.5275 -2.4875 -1.0174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083734133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:13 Heat of formation + Delta-G solvation = 35.689523 kcal Electronic energy + Delta-G solvation = -27927.749180 eV Core-core repulsion = 24010.673430 eV Total energy + Delta-G solvation = -3917.075750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.75482 -40.14240 -38.26360 -36.90213 -34.90616 -34.54949 -33.84977 -31.84674 -30.81276 -30.36655 -28.65537 -27.20033 -25.18670 -24.35644 -23.37847 -22.85606 -21.27517 -20.60069 -20.05593 -19.81214 -18.49628 -17.58491 -17.12241 -16.85579 -16.40104 -15.67341 -15.55824 -14.93694 -14.82616 -14.38460 -14.21899 -14.14018 -13.95979 -13.59671 -13.25730 -13.06956 -12.68818 -12.51156 -11.93362 -11.83941 -11.66068 -11.57625 -11.47924 -11.34615 -11.19893 -10.98286 -10.91415 -10.78123 -10.60361 -10.47881 -10.16296 -9.97931 -9.95507 -9.41133 -9.11836 -9.00511 -8.78352 -6.95580 -5.78760 -3.19038 1.24347 2.22859 2.32910 2.53969 3.01538 3.33297 3.39496 3.41622 3.95306 4.09907 4.27785 4.39108 4.41946 4.55048 4.58804 4.91223 4.94583 4.98806 5.10289 5.17250 5.20140 5.28807 5.39077 5.55995 5.56964 5.63230 5.71752 5.74132 5.74957 5.85711 5.96430 6.02146 6.09003 6.27631 6.52742 6.56057 6.73957 7.12917 7.38217 7.48182 7.63155 7.91845 8.08963 8.19971 8.20241 9.08589 9.69501 10.31651 11.26552 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.003136 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.180640 B = 8925.786439 C = 9655.152501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.132 3.868 11 C 0.141 3.859 12 H 0.103 0.897 13 N -0.713 5.713 14 C 0.512 3.488 15 O -0.522 6.522 16 C -0.032 4.032 17 H 0.120 0.880 18 C -0.097 4.097 19 C -0.120 4.120 20 C -0.035 4.035 21 C -0.006 4.006 22 N -0.259 5.259 23 N -0.080 5.080 24 N -0.377 5.377 25 H 0.448 0.552 26 C -0.011 4.011 27 C 0.064 3.936 28 H 0.060 0.940 29 O -0.566 6.566 30 C 0.128 3.872 31 H 0.252 0.748 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.397 0.603 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.383 0.617 42 H 0.117 0.883 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.090 -18.659 4.940 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.097 0.903 9 N -0.322 5.322 10 C 0.005 3.995 11 C 0.036 3.964 12 H 0.121 0.879 13 N -0.365 5.365 14 C 0.297 3.703 15 O -0.397 6.397 16 C -0.056 4.056 17 H 0.138 0.862 18 C -0.136 4.136 19 C -0.158 4.158 20 C -0.074 4.074 21 C -0.146 4.146 22 N -0.125 5.125 23 N -0.059 5.059 24 N -0.098 5.098 25 H 0.296 0.704 26 C -0.147 4.147 27 C 0.004 3.996 28 H 0.078 0.922 29 O -0.373 6.373 30 C 0.002 3.998 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.231 0.769 42 H 0.134 0.866 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.402 -19.200 4.601 19.794 hybrid contribution 0.621 2.326 0.139 2.411 sum 2.023 -16.875 4.741 17.645 Atomic orbital electron populations 1.69714 1.04933 1.24829 1.58052 1.24768 0.95784 0.97780 1.02320 0.85950 0.78693 0.83304 0.77269 1.20480 1.21690 1.21697 1.19140 0.90624 0.82190 1.42701 0.90291 1.44276 1.01349 0.99667 1.86914 1.21570 0.93668 0.85571 0.98662 1.22251 0.95533 0.84753 0.93872 0.87863 1.46002 1.58792 1.18052 1.13648 1.20391 0.78053 0.83173 0.88732 1.90737 1.51977 1.80482 1.16543 1.20084 0.91980 0.94968 0.98571 0.86249 1.21479 1.01321 0.92488 0.98295 1.21686 0.96210 0.96949 1.00918 1.20027 0.91204 0.94271 1.01937 1.21718 0.95080 0.93375 1.04440 1.74845 1.08779 1.14525 1.14363 1.78605 1.15659 0.91972 1.19678 1.44917 1.12103 1.11774 1.41006 0.70433 1.21481 0.93026 0.93785 1.06376 1.23678 0.95512 0.99064 0.81358 0.92188 1.86180 1.54980 1.76999 1.19093 1.22636 0.85989 0.92158 0.98984 0.93689 0.95264 0.95260 0.76722 0.89872 0.89551 0.89902 0.91151 0.89594 0.89503 0.76914 0.86552 0.95893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.75 10.09 55.49 0.56 -25.19 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -5.95 10.27 -15.06 -0.15 -6.10 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -14.68 3.40 -169.93 -0.58 -15.26 16 10 C 0.13 2.76 7.00 -3.06 -0.02 2.74 16 11 C 0.14 2.38 3.15 -66.10 -0.21 2.17 16 12 H 0.10 1.82 7.62 -51.93 -0.40 1.42 16 13 N -0.71 -9.62 4.64 -52.03 -0.24 -9.86 16 14 C 0.51 6.86 7.14 -10.99 -0.08 6.78 16 15 O -0.52 -8.80 15.52 5.55 0.09 -8.71 16 16 C -0.03 -0.32 2.90 -92.78 -0.27 -0.58 16 17 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 18 C -0.10 -0.83 4.66 -26.45 -0.12 -0.95 16 19 C -0.12 -0.75 5.90 -26.46 -0.16 -0.90 16 20 C -0.04 -0.27 6.30 -27.72 -0.17 -0.45 16 21 C -0.01 -0.07 7.11 -83.12 -0.59 -0.66 16 22 N -0.26 -3.53 12.40 33.16 0.41 -3.12 16 23 N -0.08 -1.07 13.40 60.35 0.81 -0.26 16 24 N -0.38 -4.18 6.76 33.39 0.23 -3.95 16 25 H 0.45 4.22 6.86 -190.07 -1.30 2.91 16 26 C -0.01 -0.11 6.38 -82.50 -0.53 -0.64 16 27 C 0.06 1.07 4.31 -24.46 -0.11 0.96 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 O -0.57 -8.47 12.23 -35.23 -0.43 -8.90 16 30 C 0.13 2.85 5.63 -2.41 -0.01 2.84 16 31 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 4.65 5.68 -40.82 -0.23 4.42 16 35 H 0.08 0.83 7.74 -51.93 -0.40 0.43 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.38 4.58 9.12 45.56 0.42 5.00 16 42 H 0.12 2.88 5.87 -51.93 -0.30 2.58 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -33.17 345.87 -7.48 -40.65 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.99 Total: 8.03 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.52 Total: 4.80 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 1.19 Total: -57.65 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.34 Total: -17.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.17 -7.48 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083734133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.339 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds