Wall clock time and date at job start Tue Mar 31 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35529 * 117.00051 * 2 1 4 4 C 1.38823 * 120.89223 * 0.24955 * 3 2 1 5 5 C 1.38711 * 119.19609 * 180.26788 * 4 3 2 6 6 O 1.35521 * 119.47148 * 179.75323 * 5 4 3 7 7 N 1.32586 * 121.05502 * 359.46911 * 5 4 3 8 8 C 1.31617 * 121.97529 * 0.26307 * 7 5 4 9 9 C 1.39535 * 120.66848 * 0.02562 * 8 7 5 10 10 C 1.47355 * 120.55121 * 179.97438 * 9 8 7 11 11 O 1.21613 * 119.99463 * 180.02562 * 10 9 8 12 12 N 1.34768 * 120.00142 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99920 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46802 * 179.97438 * 13 12 10 15 15 C 1.53783 * 113.61624 * 274.13669 * 14 13 12 16 16 C 1.53958 * 87.01833 * 220.05327 * 15 14 13 17 17 N 1.46498 * 113.53376 * 270.80911 * 16 15 14 18 18 C 1.36939 * 120.00417 * 252.49654 * 17 16 15 19 19 H 1.08003 * 119.99641 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00343 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00032 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47384 * 119.99758 * 22 20 18 25 25 H 1.48500 * 109.47591 * 240.00029 * 22 20 18 26 26 C 1.53782 * 113.61008 * 176.52761 * 14 13 12 27 27 H 1.08998 * 109.47069 * 60.00335 * 1 2 3 28 28 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47003 * 299.99925 * 1 2 3 30 30 H 1.08002 * 120.39974 * 0.02562 * 4 3 2 31 31 H 0.96700 * 114.00053 * 269.72646 * 6 5 4 32 32 H 1.07996 * 119.66047 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99970 * 359.97438 * 12 10 9 34 34 H 1.08994 * 109.46763 * 299.99386 * 13 12 10 35 35 H 1.08992 * 109.46839 * 60.00329 * 13 12 10 36 36 H 1.09002 * 112.84777 * 45.33389 * 14 13 12 37 37 H 1.08997 * 113.60937 * 334.56720 * 15 14 13 38 38 H 1.08997 * 113.61562 * 105.47322 * 15 14 13 39 39 H 1.08999 * 113.74623 * 139.94331 * 16 15 14 40 40 H 0.97010 * 120.00393 * 72.49607 * 17 16 15 41 41 H 0.96998 * 119.99694 * 179.97438 * 21 20 18 42 42 H 1.09004 * 113.61507 * 254.52742 * 26 14 13 43 43 H 1.08998 * 113.61385 * 25.43599 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 0.0052 5 6 1.9724 3.6002 -0.0007 6 8 1.2576 4.7516 -0.0007 7 7 3.2972 3.6548 -0.0005 8 6 4.0395 2.5680 -0.0001 9 6 3.4499 1.3033 -0.0002 10 6 4.2835 0.0882 -0.0002 11 8 3.7590 -1.0090 -0.0008 12 7 5.6272 0.1928 -0.0007 13 6 6.4559 -1.0153 -0.0013 14 6 7.9339 -0.6197 -0.0023 15 6 8.5018 -0.3623 -1.4081 16 6 9.7781 -1.0830 -0.9369 17 7 10.7617 -0.1885 -0.3218 18 6 11.9127 0.1285 -0.9925 19 1 12.0951 -0.2805 -1.9753 20 6 12.8450 0.9756 -0.4094 21 7 12.6230 1.4737 0.7886 22 14 14.4153 1.4075 -1.3241 23 1 14.4249 0.7227 -2.6419 24 1 14.4802 2.8768 -1.5299 25 1 15.5891 0.9669 -0.5282 26 6 8.8926 -1.8192 0.0823 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2269 2.3513 0.0097 31 1 1.0502 5.0857 -0.8841 32 1 5.1159 2.6560 -0.0004 33 1 6.0455 1.0680 -0.0013 34 1 6.2381 -1.6057 0.8887 35 1 6.2375 -1.6052 -0.8913 36 1 8.1607 0.1718 0.7119 37 1 7.9682 -0.8909 -2.1980 38 1 8.6528 0.6939 -1.6313 39 1 10.2150 -1.7389 -1.6898 40 1 10.5978 0.1792 0.5608 41 1 13.2746 2.0654 1.1962 42 1 9.3587 -1.9375 1.0606 43 1 8.4661 -2.7468 -0.2994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091237270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:07 Heat of formation + Delta-G solvation = -38.391566 kcal Electronic energy + Delta-G solvation = -26131.113938 eV Core-core repulsion = 22178.533039 eV Total energy + Delta-G solvation = -3952.580898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40694 -39.54415 -39.11829 -38.39273 -37.15422 -34.65798 -33.22791 -32.04285 -31.26474 -30.06202 -28.16240 -27.17966 -25.06251 -24.58275 -23.70028 -23.30134 -21.73335 -20.89077 -19.72312 -18.63376 -17.97565 -17.89545 -17.30948 -17.07611 -16.41872 -15.79534 -15.58263 -15.29495 -15.24609 -14.88223 -14.81799 -14.18636 -14.16171 -13.63776 -13.47075 -13.20949 -12.97445 -12.86206 -12.40037 -12.25241 -12.03169 -11.94339 -11.91518 -11.39340 -11.04212 -10.86242 -10.51141 -10.39353 -10.13726 -9.96992 -9.70301 -9.69228 -9.60480 -9.45923 -9.32001 -8.95045 -8.88069 -7.00362 -5.81326 -3.10326 0.16926 0.79393 2.57693 2.62986 3.06008 3.13551 3.41423 3.46900 3.47434 3.49522 4.05708 4.26030 4.39248 4.55451 4.61025 4.67526 4.80128 4.94716 4.99352 5.05742 5.07238 5.13451 5.22445 5.34123 5.45192 5.63084 5.71338 5.80623 5.87739 5.96454 6.11339 6.21865 6.37580 6.40753 6.59121 6.67474 6.74614 6.90030 6.96761 7.04307 7.41767 7.48172 7.69179 8.18844 8.37958 9.48713 10.06275 10.40341 11.41153 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.002384 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.189193 B =11741.255862 C =13006.495101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.270 6.270 3 C 0.237 3.763 4 C -0.290 4.290 5 C 0.369 3.631 6 O -0.480 6.480 7 N -0.527 5.527 8 C 0.199 3.801 9 C -0.233 4.233 10 C 0.564 3.436 11 O -0.524 6.524 12 N -0.721 5.721 13 C 0.133 3.867 14 C -0.121 4.121 15 C -0.169 4.169 16 C 0.167 3.833 17 N -0.706 5.706 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.147 4.147 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.152 0.848 31 H 0.407 0.593 32 H 0.174 0.826 33 H 0.400 0.600 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.068 0.932 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.723 0.651 -2.639 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.178 6.178 3 C 0.181 3.819 4 C -0.313 4.313 5 C 0.192 3.808 6 O -0.288 6.288 7 N -0.249 5.249 8 C 0.041 3.959 9 C -0.239 4.239 10 C 0.350 3.650 11 O -0.401 6.401 12 N -0.373 5.373 13 C 0.010 3.990 14 C -0.139 4.139 15 C -0.210 4.210 16 C 0.055 3.945 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.187 4.187 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.169 0.831 31 H 0.266 0.734 32 H 0.191 0.809 33 H 0.235 0.765 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -26.503 0.407 -2.154 26.594 hybrid contribution 0.188 0.482 -0.561 0.763 sum -26.315 0.888 -2.715 26.470 Atomic orbital electron populations 1.23290 0.77886 1.04977 1.01629 1.86398 1.21462 1.24533 1.85380 1.19136 0.90845 0.84890 0.87037 1.22094 1.02250 0.91623 1.15308 1.19011 0.86601 0.85019 0.90182 1.84705 1.71178 1.38653 1.34261 1.67234 1.06439 1.33225 1.18014 1.22747 1.00006 0.84845 0.88342 1.20562 0.91477 0.96134 1.15750 1.17618 0.82112 0.88033 0.77265 1.90828 1.72813 1.27271 1.49152 1.45960 1.05419 1.10773 1.75124 1.21493 0.89395 0.86179 1.01895 1.22729 0.91246 1.00103 0.99871 1.23920 1.00489 1.02110 0.94469 1.21093 0.88140 0.91469 0.93814 1.42185 1.18677 1.53886 1.19702 1.19331 0.95360 1.22907 0.99635 0.90950 1.24764 0.99031 1.00296 0.96837 1.69671 1.36418 1.36729 1.15207 0.86105 0.83397 0.77833 0.78774 1.20506 1.21842 1.21843 1.23438 0.97432 0.96349 1.01493 0.92165 0.87340 0.92109 0.83088 0.73387 0.80895 0.76502 0.91658 0.91418 0.88810 0.91385 0.91446 0.91968 0.78101 0.93482 0.91298 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.10 16 2 O -0.27 -3.03 8.71 -39.58 -0.34 -3.37 16 3 C 0.24 2.59 6.74 -38.36 -0.26 2.33 16 4 C -0.29 -2.50 9.02 -39.19 -0.35 -2.86 16 5 C 0.37 3.55 7.73 -17.05 -0.13 3.42 16 6 O -0.48 -3.67 13.54 -18.26 -0.25 -3.92 16 7 N -0.53 -5.90 10.36 -13.04 -0.14 -6.03 16 8 C 0.20 2.06 10.71 -17.16 -0.18 1.88 16 9 C -0.23 -2.72 5.90 -104.70 -0.62 -3.34 16 10 C 0.56 7.72 7.76 -12.55 -0.10 7.62 16 11 O -0.52 -8.91 15.28 -16.03 -0.24 -9.15 16 12 N -0.72 -8.74 5.51 -61.41 -0.34 -9.08 16 13 C 0.13 1.75 5.50 -4.04 -0.02 1.72 16 14 C -0.12 -1.74 3.62 -89.80 -0.33 -2.07 16 15 C -0.17 -2.72 7.44 -25.82 -0.19 -2.91 16 16 C 0.17 3.19 4.57 -67.02 -0.31 2.88 16 17 N -0.71 -17.10 5.31 -52.55 -0.28 -17.38 16 18 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 22 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 C -0.15 -2.31 7.39 -25.92 -0.19 -2.50 16 27 H 0.06 0.25 7.72 -51.93 -0.40 -0.15 16 28 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.28 7.70 -51.93 -0.40 -0.12 16 30 H 0.15 0.88 6.45 -52.49 -0.34 0.54 16 31 H 0.41 0.96 9.06 45.56 0.41 1.37 16 32 H 0.17 1.39 6.41 -52.49 -0.34 1.05 16 33 H 0.40 4.06 6.52 -40.82 -0.27 3.79 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.38 9.86 7.90 -40.82 -0.32 9.54 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -35.46 364.92 -7.29 -42.76 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -4.97 Total: 10.43 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.93 Total: 0.10 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.03 Total: -59.38 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.84 Total: -16.44 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.46 -7.29 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091237270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.365 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds