Wall clock time and date at job start Tue Mar 31 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47140 * 2 1 4 4 H 1.09005 * 109.46613 * 304.32912 * 3 2 1 5 5 C 1.50695 * 109.47186 * 184.33496 * 3 2 1 6 6 H 1.08007 * 120.00451 * 239.99482 * 5 3 2 7 7 C 1.37875 * 120.00539 * 59.99396 * 5 3 2 8 8 N 1.31521 * 119.99662 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00371 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46990 * 60.00350 * 9 7 5 11 11 H 1.48503 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47291 * 300.00204 * 9 7 5 13 13 N 1.46893 * 109.47406 * 64.33157 * 3 2 1 14 14 C 1.46907 * 111.00214 * 205.79895 * 13 3 2 15 15 C 1.50691 * 109.47194 * 174.88962 * 14 13 3 16 16 N 1.30176 * 125.23122 * 274.69317 * 15 14 13 17 17 C 1.35454 * 109.08941 * 179.87212 * 16 15 14 18 18 C 1.38979 * 107.38836 * 0.39027 * 17 16 15 19 19 N 1.35907 * 106.39651 * 359.76795 * 18 17 16 20 20 H 0.96998 * 126.20965 * 179.97438 * 19 18 17 21 21 N 1.37594 * 119.17586 * 179.74777 * 18 17 16 22 22 C 1.46502 * 119.59882 * 179.97438 * 21 18 17 23 23 C 1.34468 * 120.80001 * 359.97438 * 21 18 17 24 24 O 1.21590 * 118.85044 * 180.02562 * 23 21 18 25 25 N 1.34345 * 122.30172 * 0.04288 * 23 21 18 26 26 C 1.46500 * 119.53707 * 179.97438 * 25 23 21 27 27 C 1.35062 * 120.91782 * 359.95174 * 25 23 21 28 28 O 1.21737 * 120.75297 * 180.02562 * 27 25 23 29 29 H 1.08997 * 109.47106 * 174.09745 * 1 2 3 30 30 H 1.08997 * 109.47366 * 294.09887 * 1 2 3 31 31 H 1.09000 * 109.47026 * 54.09928 * 1 2 3 32 32 H 1.08996 * 109.47408 * 239.99700 * 2 1 3 33 33 H 1.08999 * 109.46996 * 119.99674 * 2 1 3 34 34 H 0.97005 * 119.99590 * 179.97438 * 8 7 5 35 35 H 1.00893 * 111.00226 * 81.84983 * 13 3 2 36 36 H 1.08995 * 109.47320 * 294.89435 * 14 13 3 37 37 H 1.09007 * 109.46558 * 54.89010 * 14 13 3 38 38 H 1.08997 * 109.47563 * 90.00550 * 22 21 18 39 39 H 1.09004 * 109.47052 * 210.00475 * 22 21 18 40 40 H 1.09002 * 109.47632 * 329.99706 * 22 21 18 41 41 H 1.09008 * 109.46834 * 179.97438 * 26 25 23 42 42 H 1.09003 * 109.46874 * 299.97287 * 26 25 23 43 43 H 1.08996 * 109.47585 * 59.97994 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6146 1.9782 -0.8487 5 6 3.5431 1.4439 -0.1074 6 1 4.1399 1.8915 0.6736 7 6 4.1566 0.8736 -1.2026 8 7 3.4299 0.3289 -2.1538 9 14 6.0198 0.8760 -1.3360 10 1 6.5998 0.1466 -0.1798 11 1 6.4266 0.2075 -2.5981 12 1 6.5143 2.2763 -1.3364 13 7 1.6376 2.1042 1.2482 14 6 1.5423 3.5588 1.0661 15 6 1.0082 4.1889 2.3264 16 7 -0.2520 4.3141 2.6276 17 6 -0.3611 4.9226 3.8328 18 6 0.9269 5.1884 4.2820 19 7 1.7711 4.7215 3.3247 20 1 2.7400 4.7601 3.3467 21 7 1.0984 5.8150 5.4949 22 6 2.4521 6.0992 5.9776 23 6 0.0385 6.1696 6.2427 24 8 0.2309 6.7219 7.3087 25 7 -1.2256 5.9346 5.8532 26 6 -2.3355 6.3464 6.7162 27 6 -1.4874 5.3246 4.6770 28 8 -2.6341 5.1136 4.3269 29 1 -0.3633 -1.0222 -0.1057 30 1 -0.3634 0.4196 0.9380 31 1 -0.3633 0.6026 -0.8324 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8615 -0.0720 -2.9245 35 1 2.2707 1.8747 1.9995 36 1 2.5308 3.9632 0.8483 37 1 0.8694 3.7777 0.2369 38 1 2.7630 7.0839 5.6287 39 1 2.4606 6.0805 7.0675 40 1 3.1399 5.3446 5.5960 41 1 -3.2811 6.0787 6.2446 42 1 -2.2539 5.8416 7.6789 43 1 -2.2976 7.4252 6.8673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514947708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:03 Heat of formation + Delta-G solvation = 17.614618 kcal Electronic energy + Delta-G solvation = -27176.875170 eV Core-core repulsion = 23259.015633 eV Total energy + Delta-G solvation = -3917.859537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.05717 -41.22998 -39.17071 -36.83288 -36.17037 -35.43973 -33.06910 -32.80237 -31.37531 -30.14992 -28.38861 -27.11867 -26.70855 -24.94010 -23.54574 -23.11546 -22.45122 -21.13846 -19.94240 -19.49698 -18.42631 -17.92010 -17.55874 -16.83252 -16.36398 -15.86895 -15.56845 -15.53056 -15.10465 -14.86568 -14.42245 -14.01553 -13.88737 -13.50844 -13.42191 -13.18145 -13.04316 -12.71002 -12.61570 -12.18672 -11.95569 -11.40531 -11.32668 -11.23331 -11.08108 -10.96784 -10.74441 -10.61054 -10.33818 -10.29718 -10.12956 -10.00147 -9.69237 -9.61601 -9.19967 -8.49734 -8.09099 -7.47949 -6.12081 -4.26690 1.10160 1.29524 1.54844 2.27533 2.51009 2.83567 3.17475 3.24516 3.25477 3.38478 3.85276 4.21494 4.27347 4.48066 4.70177 4.79276 4.94650 5.03228 5.09988 5.11787 5.14032 5.17749 5.38965 5.43477 5.52828 5.78415 5.96914 6.05569 6.16148 6.40910 6.52542 6.71915 6.74492 7.02224 7.05209 7.19908 7.26962 7.31477 7.48049 7.55264 7.66077 7.87661 7.91081 7.96861 8.16258 8.44537 8.83597 9.41594 10.88238 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.003020 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.244519 B = 9268.581301 C =10401.586041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.038 0.962 5 C -0.554 4.554 6 H 0.052 0.948 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.148 3.852 15 C 0.258 3.742 16 N -0.393 5.393 17 C -0.092 4.092 18 C 0.257 3.743 19 N -0.553 5.553 20 H 0.427 0.573 21 N -0.516 5.516 22 C 0.077 3.923 23 C 0.716 3.284 24 O -0.540 6.540 25 N -0.556 5.556 26 C 0.085 3.915 27 C 0.596 3.404 28 O -0.485 6.485 29 H 0.024 0.976 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.328 0.672 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 11.776 14.749 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.056 0.944 5 C -0.593 4.593 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.309 5.309 14 C 0.017 3.983 15 C -0.008 4.008 16 N -0.110 5.110 17 C -0.224 4.224 18 C 0.037 3.963 19 N -0.163 5.163 20 H 0.267 0.733 21 N -0.245 5.245 22 C -0.065 4.065 23 C 0.419 3.581 24 O -0.414 6.414 25 N -0.301 5.301 26 C -0.056 4.056 27 C 0.387 3.613 28 O -0.356 6.356 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.144 0.856 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.053 11.533 14.420 18.904 hybrid contribution 3.508 0.446 0.360 3.554 sum -0.546 11.979 14.780 19.032 Atomic orbital electron populations 1.21695 0.98631 0.98410 1.00762 1.21487 0.92380 0.98755 1.01709 1.19206 0.92743 0.91448 0.85527 0.94390 1.21761 0.92460 1.39092 1.06016 0.92977 1.24920 0.97985 0.94797 0.95603 1.69866 1.35102 1.37328 1.09404 0.86710 0.85893 0.78137 0.77517 1.20317 1.21142 1.20424 1.60877 1.55658 1.03822 1.10497 1.20318 0.99362 0.90399 0.88250 1.24088 0.84635 0.99528 0.92526 1.70277 1.16683 1.13959 1.10069 1.20189 0.88972 1.15180 0.98064 1.18072 0.91922 1.00070 0.86209 1.42775 1.10212 1.47639 1.15681 0.73313 1.43599 1.08497 1.56794 1.15581 1.22043 0.78779 1.02310 1.03320 1.15200 0.79682 0.79900 0.83366 1.91017 1.83541 1.45831 1.20973 1.45895 1.07195 1.55921 1.21127 1.21931 0.88126 1.01629 0.93916 1.16962 0.88184 0.76671 0.79438 1.90867 1.21720 1.51945 1.71028 0.95671 0.93236 0.94238 0.89069 0.95096 0.92600 0.85638 0.92918 0.87763 0.90569 0.88068 0.90134 0.87814 0.90162 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.72 37.15 0.36 -2.44 16 2 C -0.10 -2.38 5.45 -26.73 -0.15 -2.52 16 3 C 0.22 4.89 1.98 -68.87 -0.14 4.75 16 4 H 0.04 0.94 7.71 -51.93 -0.40 0.54 16 5 C -0.55 -13.42 8.47 -34.44 -0.29 -13.71 16 6 H 0.05 1.21 7.73 -52.48 -0.41 0.81 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.36 11.30 55.43 0.63 -22.74 16 9 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.68 -12.62 5.74 -109.22 -0.63 -13.25 16 14 C 0.15 2.35 6.13 -4.98 -0.03 2.32 16 15 C 0.26 3.78 7.68 -154.38 -1.19 2.59 16 16 N -0.39 -6.81 11.30 -6.83 -0.08 -6.89 16 17 C -0.09 -1.44 7.42 -82.72 -0.61 -2.06 16 18 C 0.26 3.13 7.68 -153.34 -1.18 1.95 16 19 N -0.55 -6.04 6.10 -9.06 -0.06 -6.10 16 20 H 0.43 3.15 8.81 -40.82 -0.36 2.79 16 21 N -0.52 -5.40 3.03 -127.99 -0.39 -5.79 16 22 C 0.08 0.50 10.35 59.85 0.62 1.12 16 23 C 0.72 8.62 8.10 -87.58 -0.71 7.91 16 24 O -0.54 -7.01 15.62 5.29 0.08 -6.93 16 25 N -0.56 -6.87 2.96 -129.83 -0.38 -7.26 16 26 C 0.08 0.77 9.92 59.85 0.59 1.37 16 27 C 0.60 9.10 7.63 -12.85 -0.10 9.00 16 28 O -0.48 -8.60 16.50 5.16 0.09 -8.52 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.99 7.90 -51.93 -0.41 0.58 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 2.32 5.97 -51.93 -0.31 2.01 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.33 5.88 8.45 -39.30 -0.33 5.55 16 36 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 37 H 0.10 1.74 7.93 -51.93 -0.41 1.33 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.66 7.34 -51.93 -0.38 0.28 16 40 H 0.08 0.36 7.84 -51.93 -0.41 -0.05 16 41 H 0.10 0.94 6.90 -51.92 -0.36 0.58 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -31.43 361.07 -9.09 -40.52 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.87 Total: 5.00 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: -2.91 Total: 11.97 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.91 Total: -62.02 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.17 Total: -15.44 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.43 -9.09 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514947708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.136 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds