Wall clock time and date at job start Tue Mar 31 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47140 * 2 1 4 4 H 1.09005 * 109.46613 * 304.32912 * 3 2 1 5 5 C 1.50695 * 109.47186 * 184.33496 * 3 2 1 6 6 H 1.08007 * 120.00451 * 239.99482 * 5 3 2 7 7 C 1.37875 * 120.00539 * 59.99396 * 5 3 2 8 8 N 1.31521 * 119.99662 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00371 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46990 * 60.00350 * 9 7 5 11 11 H 1.48503 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47291 * 300.00204 * 9 7 5 13 13 N 1.46893 * 109.47406 * 64.33157 * 3 2 1 14 14 C 1.46907 * 111.00214 * 205.79895 * 13 3 2 15 15 C 1.50691 * 109.47194 * 174.88962 * 14 13 3 16 16 N 1.30176 * 125.23122 * 274.69317 * 15 14 13 17 17 C 1.35454 * 109.08941 * 179.87212 * 16 15 14 18 18 C 1.38979 * 107.38836 * 0.39027 * 17 16 15 19 19 N 1.35907 * 106.39651 * 359.76795 * 18 17 16 20 20 H 0.96998 * 126.20965 * 179.97438 * 19 18 17 21 21 N 1.37594 * 119.17586 * 179.74777 * 18 17 16 22 22 C 1.46502 * 119.59882 * 179.97438 * 21 18 17 23 23 C 1.34468 * 120.80001 * 359.97438 * 21 18 17 24 24 O 1.21590 * 118.85044 * 180.02562 * 23 21 18 25 25 N 1.34345 * 122.30172 * 0.04288 * 23 21 18 26 26 C 1.46500 * 119.53707 * 179.97438 * 25 23 21 27 27 C 1.35062 * 120.91782 * 359.95174 * 25 23 21 28 28 O 1.21737 * 120.75297 * 180.02562 * 27 25 23 29 29 H 1.08997 * 109.47106 * 174.09745 * 1 2 3 30 30 H 1.08997 * 109.47366 * 294.09887 * 1 2 3 31 31 H 1.09000 * 109.47026 * 54.09928 * 1 2 3 32 32 H 1.08996 * 109.47408 * 239.99700 * 2 1 3 33 33 H 1.08999 * 109.46996 * 119.99674 * 2 1 3 34 34 H 0.97005 * 119.99590 * 179.97438 * 8 7 5 35 35 H 1.00893 * 111.00226 * 81.84983 * 13 3 2 36 36 H 1.08995 * 109.47320 * 294.89435 * 14 13 3 37 37 H 1.09007 * 109.46558 * 54.89010 * 14 13 3 38 38 H 1.08997 * 109.47563 * 90.00550 * 22 21 18 39 39 H 1.09004 * 109.47052 * 210.00475 * 22 21 18 40 40 H 1.09002 * 109.47632 * 329.99706 * 22 21 18 41 41 H 1.09008 * 109.46834 * 179.97438 * 26 25 23 42 42 H 1.09003 * 109.46874 * 299.97287 * 26 25 23 43 43 H 1.08996 * 109.47585 * 59.97994 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6146 1.9782 -0.8487 5 6 3.5431 1.4439 -0.1074 6 1 4.1399 1.8915 0.6736 7 6 4.1566 0.8736 -1.2026 8 7 3.4299 0.3289 -2.1538 9 14 6.0198 0.8760 -1.3360 10 1 6.5998 0.1466 -0.1798 11 1 6.4266 0.2075 -2.5981 12 1 6.5143 2.2763 -1.3364 13 7 1.6376 2.1042 1.2482 14 6 1.5423 3.5588 1.0661 15 6 1.0082 4.1889 2.3264 16 7 -0.2520 4.3141 2.6276 17 6 -0.3611 4.9226 3.8328 18 6 0.9269 5.1884 4.2820 19 7 1.7711 4.7215 3.3247 20 1 2.7400 4.7601 3.3467 21 7 1.0984 5.8150 5.4949 22 6 2.4521 6.0992 5.9776 23 6 0.0385 6.1696 6.2427 24 8 0.2309 6.7219 7.3087 25 7 -1.2256 5.9346 5.8532 26 6 -2.3355 6.3464 6.7162 27 6 -1.4874 5.3246 4.6770 28 8 -2.6341 5.1136 4.3269 29 1 -0.3633 -1.0222 -0.1057 30 1 -0.3634 0.4196 0.9380 31 1 -0.3633 0.6026 -0.8324 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8615 -0.0720 -2.9245 35 1 2.2707 1.8747 1.9995 36 1 2.5308 3.9632 0.8483 37 1 0.8694 3.7777 0.2369 38 1 2.7630 7.0839 5.6287 39 1 2.4606 6.0805 7.0675 40 1 3.1399 5.3446 5.5960 41 1 -3.2811 6.0787 6.2446 42 1 -2.2539 5.8416 7.6789 43 1 -2.2976 7.4252 6.8673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514947708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:00 Heat of formation + Delta-G solvation = -3.502810 kcal Electronic energy + Delta-G solvation = -27177.790891 eV Core-core repulsion = 23259.015633 eV Total energy + Delta-G solvation = -3918.775257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -44.09240 -42.25610 -40.24580 -38.15355 -37.44547 -36.47982 -34.55812 -34.06834 -33.07285 -31.19037 -29.55744 -28.20630 -27.88084 -26.38659 -24.58444 -24.41975 -23.85241 -22.21265 -21.44545 -20.83089 -19.47288 -18.88308 -18.65323 -18.51675 -17.34537 -16.91182 -16.85712 -16.53973 -16.47435 -16.02754 -15.83310 -15.45933 -15.05372 -14.94242 -14.49111 -14.25581 -13.91819 -13.68985 -13.57780 -13.53406 -13.34540 -13.04739 -12.99582 -12.73684 -12.47477 -12.41462 -12.09134 -11.97082 -11.75936 -11.47141 -11.42389 -11.37271 -11.26321 -10.99536 -10.93710 -10.40786 -9.20642 -9.02212 -8.00387 -6.22403 0.05231 0.36923 0.46925 1.27161 1.42530 1.45569 1.47489 1.53543 1.93444 2.29315 2.45233 2.81723 3.20045 3.21906 3.58186 3.81282 3.89184 4.08065 4.22963 4.32294 4.34254 4.42570 4.53663 4.62229 4.65636 4.72482 4.74400 4.78363 4.81282 4.98538 4.99281 5.12529 5.24350 5.47651 5.54791 5.65779 5.75292 5.81958 6.08758 6.11827 6.19045 6.27124 6.37329 6.51296 6.77645 6.82646 7.03358 7.49632 8.96907 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.003020 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.244519 B = 9268.581301 C =10401.586041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.226 3.774 4 H 0.009 0.991 5 C -0.558 4.558 6 H 0.063 0.937 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.293 1.293 12 H -0.269 1.269 13 N -0.678 5.678 14 C 0.156 3.844 15 C 0.259 3.741 16 N -0.434 5.434 17 C -0.136 4.136 18 C 0.294 3.706 19 N -0.530 5.530 20 H 0.447 0.553 21 N -0.509 5.509 22 C 0.067 3.933 23 C 0.714 3.286 24 O -0.546 6.546 25 N -0.554 5.554 26 C 0.079 3.921 27 C 0.594 3.406 28 O -0.523 6.523 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.334 0.666 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 12.882 16.629 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.118 3.882 4 H 0.027 0.973 5 C -0.597 4.597 6 H 0.082 0.918 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.219 1.219 12 H -0.194 1.194 13 N -0.309 5.309 14 C 0.024 3.976 15 C -0.008 4.008 16 N -0.151 5.151 17 C -0.266 4.266 18 C 0.072 3.928 19 N -0.142 5.142 20 H 0.291 0.709 21 N -0.237 5.237 22 C -0.073 4.073 23 C 0.416 3.584 24 O -0.420 6.420 25 N -0.298 5.298 26 C -0.061 4.061 27 C 0.387 3.613 28 O -0.398 6.398 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.996 12.675 16.358 20.790 hybrid contribution 2.895 0.162 -0.137 2.902 sum 0.899 12.837 16.222 20.706 Atomic orbital electron populations 1.21555 0.96935 0.99263 1.00525 1.21371 0.93855 0.98721 1.00105 1.18926 0.91897 0.91232 0.86143 0.97287 1.22137 0.93485 1.38151 1.05897 0.91848 1.25662 1.01892 0.94833 0.95584 1.70016 1.36585 1.38506 1.09940 0.85741 0.81203 0.78352 0.77040 1.19843 1.21924 1.19435 1.60698 1.55611 1.05586 1.08957 1.20161 0.99934 0.88802 0.88679 1.23521 0.84436 1.00077 0.92742 1.70148 1.18354 1.15145 1.11498 1.20306 0.90604 1.17284 0.98428 1.17855 0.90879 0.97886 0.86211 1.42478 1.10969 1.46450 1.14273 0.70865 1.43823 1.09777 1.55608 1.14502 1.22439 0.76834 1.04318 1.03704 1.15289 0.79728 0.79892 0.83443 1.91022 1.83565 1.46190 1.21188 1.45984 1.08247 1.55084 1.20480 1.22167 0.87193 1.02824 0.93918 1.17089 0.87732 0.76432 0.80015 1.90833 1.22965 1.53869 1.72089 0.94160 0.92982 0.94940 0.91928 0.95280 0.93009 0.84870 0.91233 0.89141 0.88717 0.87808 0.87557 0.88137 0.88701 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.72 71.98 0.70 -4.39 16 2 C -0.10 -4.65 5.45 30.59 0.17 -4.49 16 3 C 0.23 10.17 1.98 44.17 0.09 10.25 16 4 H 0.01 0.46 7.71 -2.38 -0.02 0.45 16 5 C -0.56 -26.54 8.47 25.60 0.22 -26.32 16 6 H 0.06 2.81 7.73 -2.91 -0.02 2.79 16 7 C 0.02 1.04 5.29 84.65 0.45 1.48 16 8 N -0.91 -49.12 11.30 21.45 0.24 -48.88 16 9 Si 0.95 39.52 29.54 68.60 2.03 41.54 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 13 N -0.68 -24.70 5.74 -499.48 -2.87 -27.56 16 14 C 0.16 4.79 6.13 85.55 0.52 5.31 16 15 C 0.26 7.24 7.68 137.76 1.06 8.30 16 16 N -0.43 -14.98 11.30 -175.53 -1.98 -16.97 16 17 C -0.14 -4.17 7.42 40.88 0.30 -3.87 16 18 C 0.29 6.50 7.68 132.42 1.02 7.51 16 19 N -0.53 -10.11 6.10 -182.57 -1.11 -11.23 16 20 H 0.45 4.81 8.81 -92.71 -0.82 4.00 16 21 N -0.51 -9.21 3.03 -677.29 -2.05 -11.26 16 22 C 0.07 0.61 10.35 127.77 1.32 1.93 16 23 C 0.71 15.69 8.10 179.29 1.45 17.14 16 24 O -0.55 -12.80 15.62 -4.00 -0.06 -12.86 16 25 N -0.55 -13.14 2.96 -801.23 -2.37 -15.51 16 26 C 0.08 1.36 9.92 127.77 1.27 2.63 16 27 C 0.59 18.20 7.63 86.32 0.66 18.86 16 28 O -0.52 -19.15 16.50 -4.47 -0.07 -19.23 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 2.07 7.90 -2.39 -0.02 2.05 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 3.25 5.97 -2.39 -0.01 3.23 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 35 H 0.33 11.42 8.45 -89.70 -0.76 10.66 16 36 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 37 H 0.09 3.06 7.93 -2.38 -0.02 3.04 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.10 0.98 7.34 -2.38 -0.02 0.97 16 40 H 0.11 0.45 7.84 -2.39 -0.02 0.43 16 41 H 0.10 1.82 6.90 -2.38 -0.02 1.80 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -68.81 361.07 0.46 -68.34 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.51 Total: 19.26 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: 9.22 Total: 34.35 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -10.14 Total: -131.41 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.14 Total: -32.09 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -68.81 0.46 -68.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514947708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.841 kcal (2) G-P(sol) polarization free energy of solvation -68.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds