Wall clock time and date at job start Tue Mar 31 2020 04:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46711 * 299.99743 * 3 2 1 6 6 H 1.48496 * 109.47451 * 59.99729 * 3 2 1 7 7 C 1.38808 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00541 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99736 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.49046 * 180.02562 * 9 7 2 11 11 C 1.53953 * 86.11752 * 155.35588 * 10 9 7 12 12 O 1.42897 * 113.74327 * 137.95258 * 11 10 9 13 13 C 1.42895 * 114.00152 * 151.92358 * 12 11 10 14 14 C 1.53043 * 109.46049 * 149.99768 * 13 12 11 15 15 C 1.53189 * 109.31217 * 181.38774 * 14 13 12 16 16 N 1.46931 * 108.77335 * 305.36374 * 15 14 13 17 17 C 1.34782 * 120.62910 * 233.58328 * 16 15 14 18 18 O 1.21612 * 119.99938 * 359.93680 * 17 16 15 19 19 C 1.47236 * 119.99757 * 180.20619 * 17 16 15 20 20 C 1.36997 * 127.18763 * 208.30550 * 19 17 16 21 21 N 1.33322 * 106.37452 * 179.97438 * 20 19 17 22 22 N 1.28513 * 109.43446 * 359.97438 * 21 20 19 23 23 N 1.28708 * 110.64103 * 359.75573 * 22 21 20 24 24 H 0.97003 * 126.04000 * 180.23774 * 23 22 21 25 25 C 1.46921 * 118.73901 * 53.86240 * 16 15 14 26 26 C 1.53037 * 109.46104 * 270.06713 * 13 12 11 27 27 C 1.47815 * 134.45936 * 359.86155 * 9 7 2 28 28 H 0.96998 * 119.99996 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.77067 * 41.05129 * 10 9 7 30 30 H 1.09008 * 113.76818 * 269.65369 * 10 9 7 31 31 H 1.09001 * 113.73857 * 269.15476 * 11 10 9 32 32 H 1.09003 * 109.45795 * 30.02853 * 13 12 11 33 33 H 1.08995 * 109.49708 * 61.43597 * 14 13 12 34 34 H 1.09003 * 109.52356 * 301.35084 * 14 13 12 35 35 H 1.09001 * 109.58908 * 185.57604 * 15 14 13 36 36 H 1.09004 * 109.70774 * 65.22032 * 15 14 13 37 37 H 1.08002 * 126.81774 * 359.97136 * 20 19 17 38 38 H 1.09005 * 109.58616 * 65.92244 * 25 16 15 39 39 H 1.08999 * 109.58811 * 186.34627 * 25 16 15 40 40 H 1.09002 * 109.49721 * 298.56285 * 26 13 12 41 41 H 1.09001 * 109.50059 * 58.66064 * 26 13 12 42 42 H 1.08998 * 113.76250 * 90.38280 * 27 9 7 43 43 H 1.08997 * 113.83259 * 318.92703 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7202 -3.8101 0.0015 11 6 0.3465 -4.0827 0.6410 12 8 -0.3167 -5.2323 0.1116 13 6 -1.2057 -5.8664 1.0333 14 6 -2.3514 -6.5278 0.2638 15 6 -3.3206 -7.1767 1.2569 16 7 -2.5667 -8.0937 2.1228 17 6 -2.9473 -9.3796 2.2576 18 8 -3.9237 -9.7905 1.6603 19 6 -2.1844 -10.2852 3.1326 20 6 -2.0540 -11.6432 3.0068 21 7 -1.2782 -12.0413 4.0152 22 7 -0.9419 -11.0232 4.7237 23 7 -1.4510 -9.9450 4.2391 24 1 -1.3380 -9.0500 4.5957 25 6 -1.3939 -7.5806 2.8438 26 6 -0.4431 -6.9285 1.8286 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8400 -0.0004 29 1 2.5620 -4.0320 0.6573 30 1 1.8326 -4.2355 -0.9959 31 1 0.3582 -4.0631 1.7308 32 1 -1.6107 -5.1214 1.7181 33 1 -1.9492 -7.2904 -0.4031 34 1 -2.8798 -5.7749 -0.3211 35 1 -4.0838 -7.7328 0.7125 36 1 -3.7942 -6.4061 1.8652 37 1 -2.4927 -12.2674 2.2424 38 1 -1.7115 -6.8407 3.5786 39 1 -0.8855 -8.4031 3.3468 40 1 -0.0589 -7.6873 1.1469 41 1 0.3870 -6.4605 2.3579 42 1 -0.5311 -2.8722 -0.9943 43 1 -0.7188 -2.1398 0.6593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093548968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:01 Heat of formation + Delta-G solvation = 96.104175 kcal Electronic energy + Delta-G solvation = -26915.812334 eV Core-core repulsion = 23001.356360 eV Total energy + Delta-G solvation = -3914.455974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.90606 -40.57372 -38.89633 -37.59905 -35.75744 -34.23721 -32.57477 -32.09698 -31.53129 -31.15014 -27.57631 -26.08552 -24.87700 -24.32859 -23.95901 -23.19449 -22.75467 -21.65402 -20.52142 -19.47476 -18.59794 -17.68404 -16.96032 -16.84848 -16.67430 -16.43668 -15.52621 -15.12796 -14.84591 -14.78244 -14.68930 -14.40344 -14.05760 -13.84013 -13.41317 -13.10428 -12.75152 -12.62740 -12.25152 -12.10176 -11.89155 -11.74150 -11.61551 -11.34655 -11.24218 -11.14264 -10.96177 -10.81066 -10.68627 -10.60400 -10.34772 -10.04141 -10.00206 -9.62850 -9.28728 -8.88155 -8.86010 -6.97747 -5.85102 -3.18218 0.44582 1.78737 1.91422 2.21043 2.56077 3.33435 3.38757 3.41600 3.59606 3.78261 4.05326 4.06516 4.40147 4.47199 4.49932 4.55905 4.68844 4.78377 4.85086 5.05369 5.07065 5.13643 5.21545 5.37729 5.40987 5.45347 5.51447 5.54394 5.61060 5.68719 5.80055 6.01351 6.02100 6.07911 6.31490 6.52898 6.56200 6.65976 7.00414 7.15026 7.41602 7.44613 7.74890 7.79272 7.89494 8.96279 9.62176 10.49996 11.32185 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.002344 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.515360 B =11941.727999 C =12461.967852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.222 4.222 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.121 3.879 11 C 0.033 3.967 12 O -0.371 6.371 13 C 0.092 3.908 14 C -0.132 4.132 15 C 0.116 3.884 16 N -0.604 5.604 17 C 0.596 3.404 18 O -0.513 6.513 19 C -0.061 4.061 20 C 0.030 3.970 21 N -0.267 5.267 22 N -0.049 5.049 23 N -0.379 5.379 24 H 0.454 0.546 25 C 0.090 3.910 26 C -0.156 4.156 27 C 0.149 3.851 28 H 0.254 0.746 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.204 0.796 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 -18.439 7.634 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.349 4.349 8 H 0.100 0.900 9 N -0.337 5.337 10 C -0.005 4.005 11 C -0.025 4.025 12 O -0.288 6.288 13 C 0.033 3.967 14 C -0.171 4.171 15 C -0.005 4.005 16 N -0.338 5.338 17 C 0.381 3.619 18 O -0.386 6.386 19 C -0.195 4.195 20 C -0.129 4.129 21 N -0.132 5.132 22 N -0.031 5.031 23 N -0.111 5.111 24 H 0.306 0.694 25 C -0.034 4.034 26 C -0.194 4.194 27 C 0.024 3.976 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.221 0.779 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.043 -19.091 8.170 21.627 hybrid contribution 0.021 2.147 -0.439 2.192 sum -6.022 -16.943 7.731 19.573 Atomic orbital electron populations 1.69830 1.05058 1.25357 1.56526 1.24815 0.95733 0.97653 1.02283 0.86016 0.78754 0.83482 0.77327 1.20379 1.21637 1.21631 1.19037 0.90289 0.81571 1.44020 0.89998 1.45702 1.02515 0.99315 1.86187 1.22728 0.93769 0.86211 0.97783 1.25067 0.94749 0.85303 0.97391 1.87980 1.58658 1.43573 1.38618 1.21938 0.90021 0.93316 0.91453 1.22003 0.95919 1.00946 0.98185 1.21770 0.94349 0.92157 0.92256 1.48110 1.29475 1.09364 1.46806 1.16817 0.83378 0.80803 0.80916 1.90876 1.25696 1.74991 1.47066 1.22320 1.04941 0.97056 0.95203 1.23922 0.98606 0.91186 0.99184 1.75014 1.13101 1.20607 1.04483 1.78241 1.16607 0.88326 1.19917 1.46410 1.33047 1.11836 1.19794 0.69377 1.22290 0.86413 0.99029 0.95635 1.22539 0.98445 0.99987 0.98446 1.22744 0.88204 0.88845 0.97853 0.93604 0.93632 0.93985 0.90215 0.91772 0.90526 0.89081 0.87900 0.90370 0.77892 0.89645 0.90487 0.90303 0.89740 0.94767 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 11.39 55.49 0.63 -26.18 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.45 3.70 -177.94 -0.66 -16.11 16 10 C 0.12 2.46 8.77 -2.96 -0.03 2.43 16 11 C 0.03 0.60 4.29 -25.81 -0.11 0.49 16 12 O -0.37 -5.78 10.01 -35.23 -0.35 -6.13 16 13 C 0.09 1.01 2.45 -26.69 -0.07 0.95 16 14 C -0.13 -1.28 5.73 -26.61 -0.15 -1.43 16 15 C 0.12 0.94 6.43 -3.71 -0.02 0.91 16 16 N -0.60 -4.78 2.97 -173.84 -0.52 -5.30 16 17 C 0.60 5.63 7.66 -12.60 -0.10 5.54 16 18 O -0.51 -6.36 16.44 5.27 0.09 -6.27 16 19 C -0.06 -0.52 6.48 -82.33 -0.53 -1.05 16 20 C 0.03 0.27 11.97 -17.35 -0.21 0.06 16 21 N -0.27 -2.82 12.35 30.47 0.38 -2.44 16 22 N -0.05 -0.47 13.35 60.35 0.81 0.33 16 23 N -0.38 -2.64 5.77 33.31 0.19 -2.45 16 24 H 0.45 1.72 6.48 -190.33 -1.23 0.49 16 25 C 0.09 0.55 5.68 -3.49 -0.02 0.53 16 26 C -0.16 -1.35 5.71 -26.39 -0.15 -1.50 16 27 C 0.15 3.44 7.36 -2.85 -0.02 3.42 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 31 H 0.08 1.32 7.80 -51.93 -0.41 0.91 16 32 H 0.06 0.70 7.74 -51.93 -0.40 0.29 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.89 7.00 -51.93 -0.36 0.53 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.37 3.82 -51.93 -0.20 0.17 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -34.12 353.07 -7.55 -41.67 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.75 Total: -2.86 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.66 Total: 3.71 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.83 Total: -52.13 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.27 Total: -12.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.12 -7.55 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093548968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.773 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds