Wall clock time and date at job start Tue Mar 31 2020 04:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46711 * 299.99743 * 3 2 1 6 6 H 1.48496 * 109.47451 * 59.99729 * 3 2 1 7 7 C 1.38808 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00541 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99736 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.49046 * 180.02562 * 9 7 2 11 11 C 1.53953 * 86.11752 * 155.35588 * 10 9 7 12 12 O 1.42897 * 113.74327 * 137.95258 * 11 10 9 13 13 C 1.42895 * 114.00152 * 151.92358 * 12 11 10 14 14 C 1.53043 * 109.46049 * 149.99768 * 13 12 11 15 15 C 1.53189 * 109.31217 * 181.38774 * 14 13 12 16 16 N 1.46931 * 108.77335 * 305.36374 * 15 14 13 17 17 C 1.34782 * 120.62910 * 233.58328 * 16 15 14 18 18 O 1.21612 * 119.99938 * 359.93680 * 17 16 15 19 19 C 1.47236 * 119.99757 * 180.20619 * 17 16 15 20 20 C 1.36997 * 127.18763 * 208.30550 * 19 17 16 21 21 N 1.33322 * 106.37452 * 179.97438 * 20 19 17 22 22 N 1.28513 * 109.43446 * 359.97438 * 21 20 19 23 23 N 1.28708 * 110.64103 * 359.75573 * 22 21 20 24 24 H 0.97003 * 126.04000 * 180.23774 * 23 22 21 25 25 C 1.46921 * 118.73901 * 53.86240 * 16 15 14 26 26 C 1.53037 * 109.46104 * 270.06713 * 13 12 11 27 27 C 1.47815 * 134.45936 * 359.86155 * 9 7 2 28 28 H 0.96998 * 119.99996 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.77067 * 41.05129 * 10 9 7 30 30 H 1.09008 * 113.76818 * 269.65369 * 10 9 7 31 31 H 1.09001 * 113.73857 * 269.15476 * 11 10 9 32 32 H 1.09003 * 109.45795 * 30.02853 * 13 12 11 33 33 H 1.08995 * 109.49708 * 61.43597 * 14 13 12 34 34 H 1.09003 * 109.52356 * 301.35084 * 14 13 12 35 35 H 1.09001 * 109.58908 * 185.57604 * 15 14 13 36 36 H 1.09004 * 109.70774 * 65.22032 * 15 14 13 37 37 H 1.08002 * 126.81774 * 359.97136 * 20 19 17 38 38 H 1.09005 * 109.58616 * 65.92244 * 25 16 15 39 39 H 1.08999 * 109.58811 * 186.34627 * 25 16 15 40 40 H 1.09002 * 109.49721 * 298.56285 * 26 13 12 41 41 H 1.09001 * 109.50059 * 58.66064 * 26 13 12 42 42 H 1.08998 * 113.76250 * 90.38280 * 27 9 7 43 43 H 1.08997 * 113.83259 * 318.92703 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7202 -3.8101 0.0015 11 6 0.3465 -4.0827 0.6410 12 8 -0.3167 -5.2323 0.1116 13 6 -1.2057 -5.8664 1.0333 14 6 -2.3514 -6.5278 0.2638 15 6 -3.3206 -7.1767 1.2569 16 7 -2.5667 -8.0937 2.1228 17 6 -2.9473 -9.3796 2.2576 18 8 -3.9237 -9.7905 1.6603 19 6 -2.1844 -10.2852 3.1326 20 6 -2.0540 -11.6432 3.0068 21 7 -1.2782 -12.0413 4.0152 22 7 -0.9419 -11.0232 4.7237 23 7 -1.4510 -9.9450 4.2391 24 1 -1.3380 -9.0500 4.5957 25 6 -1.3939 -7.5806 2.8438 26 6 -0.4431 -6.9285 1.8286 27 6 -0.1058 -2.7571 0.0026 28 1 -0.4850 0.8400 -0.0004 29 1 2.5620 -4.0320 0.6573 30 1 1.8326 -4.2355 -0.9959 31 1 0.3582 -4.0631 1.7308 32 1 -1.6107 -5.1214 1.7181 33 1 -1.9492 -7.2904 -0.4031 34 1 -2.8798 -5.7749 -0.3211 35 1 -4.0838 -7.7328 0.7125 36 1 -3.7942 -6.4061 1.8652 37 1 -2.4927 -12.2674 2.2424 38 1 -1.7115 -6.8407 3.5786 39 1 -0.8855 -8.4031 3.3468 40 1 -0.0589 -7.6873 1.1469 41 1 0.3870 -6.4605 2.3579 42 1 -0.5311 -2.8722 -0.9943 43 1 -0.7188 -2.1398 0.6593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093548968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:00 Heat of formation + Delta-G solvation = 71.318763 kcal Electronic energy + Delta-G solvation = -26916.887110 eV Core-core repulsion = 23001.356360 eV Total energy + Delta-G solvation = -3915.530750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.57375 -41.33073 -40.20381 -38.72304 -36.95665 -34.97556 -34.14892 -33.19039 -32.39182 -31.86342 -29.45240 -26.91709 -26.59049 -25.14427 -24.94594 -24.38860 -23.67667 -22.38220 -21.41243 -20.99476 -19.27836 -18.82714 -18.43324 -17.77712 -17.52678 -17.33871 -16.98933 -16.26284 -15.94744 -15.74048 -15.51182 -15.41828 -15.25233 -14.93458 -14.59234 -14.28311 -13.82632 -13.46319 -13.40465 -13.30380 -13.23717 -12.90494 -12.84104 -12.79245 -12.45917 -12.31020 -12.25878 -11.98229 -11.87399 -11.74325 -11.52043 -11.45339 -11.32961 -10.89621 -10.70153 -10.24224 -9.96542 -8.98016 -7.93960 -5.28753 -0.22279 1.10263 1.29075 1.45700 1.46910 1.53955 1.57219 1.90540 2.40955 2.71167 2.97762 3.26414 3.41864 3.44551 3.48107 3.77210 3.81060 3.82485 3.93104 4.02919 4.11642 4.15207 4.21950 4.31382 4.34601 4.47489 4.67973 4.74516 4.77486 4.86048 4.88773 4.91586 4.95284 5.10122 5.17424 5.21827 5.30915 5.35449 5.48983 5.54558 5.87933 5.99169 6.45850 6.70686 6.88403 7.11236 7.56467 8.51056 9.23243 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.002344 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.515360 B =11941.727999 C =12461.967852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.234 4.234 8 H 0.087 0.913 9 N -0.639 5.639 10 C 0.119 3.881 11 C 0.074 3.926 12 O -0.383 6.383 13 C 0.081 3.919 14 C -0.127 4.127 15 C 0.121 3.879 16 N -0.599 5.599 17 C 0.600 3.400 18 O -0.546 6.546 19 C -0.061 4.061 20 C 0.026 3.974 21 N -0.293 5.293 22 N -0.061 5.061 23 N -0.357 5.357 24 H 0.467 0.533 25 C 0.092 3.908 26 C -0.150 4.150 27 C 0.143 3.857 28 H 0.250 0.750 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.219 0.781 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.011 0.989 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -18.917 9.120 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.368 5.368 10 C -0.006 4.006 11 C 0.015 3.985 12 O -0.301 6.301 13 C 0.023 3.977 14 C -0.165 4.165 15 C 0.000 4.000 16 N -0.332 5.332 17 C 0.386 3.614 18 O -0.422 6.422 19 C -0.195 4.195 20 C -0.134 4.134 21 N -0.158 5.158 22 N -0.042 5.042 23 N -0.092 5.092 24 H 0.323 0.677 25 C -0.030 4.030 26 C -0.188 4.188 27 C 0.017 3.983 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.236 0.764 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.029 0.971 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.327 -19.587 9.681 22.489 hybrid contribution -0.212 2.242 -0.957 2.447 sum -5.539 -17.345 8.724 20.190 Atomic orbital electron populations 1.70014 1.06497 1.25709 1.57980 1.25678 0.96634 1.01010 1.02713 0.84970 0.78232 0.79097 0.76772 1.18820 1.22141 1.21499 1.19442 0.90894 0.82929 1.42983 0.89537 1.46095 1.03721 1.00716 1.86265 1.22876 0.95905 0.83458 0.98392 1.24375 0.92555 0.83797 0.97735 1.87957 1.59346 1.42464 1.40318 1.22278 0.89947 0.94075 0.91367 1.21939 0.95758 1.00443 0.98365 1.21732 0.93698 0.92381 0.92230 1.48156 1.29718 1.08855 1.46444 1.16856 0.82952 0.81073 0.80569 1.90866 1.27245 1.75629 1.48492 1.22159 1.05123 0.96771 0.95483 1.24275 0.98184 0.91755 0.99150 1.75007 1.14143 1.21324 1.05290 1.78190 1.17105 0.88816 1.20124 1.46377 1.31790 1.12103 1.18942 0.67672 1.22449 0.85302 1.00065 0.95214 1.22453 0.98909 0.98944 0.98541 1.22688 0.87182 0.91786 0.96647 0.94139 0.91397 0.94116 0.87929 0.90835 0.91614 0.89624 0.88524 0.88382 0.76416 0.86583 0.89116 0.91390 0.88814 0.97100 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.65 11.39 21.65 0.25 -56.40 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.98 44.77 29.55 68.60 2.03 46.80 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.23 -12.97 10.70 84.03 0.90 -12.07 16 8 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.64 -32.46 3.70 -720.69 -2.67 -35.13 16 10 C 0.12 4.65 8.77 86.49 0.76 5.41 16 11 C 0.07 2.55 4.29 31.25 0.13 2.69 16 12 O -0.38 -11.37 10.01 -148.98 -1.49 -12.86 16 13 C 0.08 1.62 2.45 30.62 0.07 1.69 16 14 C -0.13 -2.29 5.73 30.67 0.18 -2.11 16 15 C 0.12 1.72 6.43 86.36 0.56 2.27 16 16 N -0.60 -7.98 2.97 -822.16 -2.44 -10.41 16 17 C 0.60 10.25 7.66 86.61 0.66 10.91 16 18 O -0.55 -12.99 16.44 -4.07 -0.07 -13.06 16 19 C -0.06 -0.91 6.48 40.40 0.26 -0.64 16 20 C 0.03 0.43 11.97 84.18 1.01 1.43 16 21 N -0.29 -5.84 12.35 -57.50 -0.71 -6.55 16 22 N -0.06 -1.06 13.35 37.02 0.49 -0.56 16 23 N -0.36 -4.09 5.77 -48.52 -0.28 -4.37 16 24 H 0.47 2.01 6.48 -219.90 -1.42 0.58 16 25 C 0.09 0.79 5.68 86.51 0.49 1.28 16 26 C -0.15 -2.15 5.71 30.82 0.18 -1.97 16 27 C 0.14 6.68 7.36 86.43 0.64 7.32 16 28 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.10 3.10 7.80 -2.39 -0.02 3.08 16 32 H 0.07 1.38 7.74 -2.39 -0.02 1.36 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 1.57 7.00 -2.39 -0.02 1.55 16 36 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.22 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.09 0.54 3.82 -2.39 -0.01 0.54 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.05 2.43 7.16 -2.39 -0.02 2.41 16 Total: -1.00 -74.93 353.07 1.04 -73.90 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -0.38 Total: 5.76 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.30 Total: 12.89 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -5.36 Total: -113.43 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.56 Total: -25.92 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.93 1.04 -73.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093548968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.215 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds