Wall clock time and date at job start Tue Mar 31 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47277 * 2 1 4 4 N 1.46500 * 109.47239 * 239.99774 * 2 1 3 5 5 C 1.34774 * 119.99630 * 85.00318 * 4 2 1 6 6 O 1.21349 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.49453 * 119.99846 * 180.02562 * 5 4 2 8 8 O 1.21353 * 120.00125 * 5.08748 * 7 5 4 9 9 N 1.34774 * 120.00102 * 185.09319 * 7 5 4 10 10 C 1.46494 * 120.00151 * 184.55658 * 9 7 5 11 11 C 1.53003 * 109.47491 * 184.70074 * 10 9 7 12 12 C 1.50708 * 115.54705 * 294.79992 * 11 10 9 13 13 H 1.07999 * 119.99435 * 121.52691 * 12 11 10 14 14 C 1.37869 * 119.99831 * 301.24568 * 12 11 10 15 15 N 1.31521 * 120.00014 * 173.16061 * 14 12 11 16 16 Si 1.86803 * 120.00258 * 353.16421 * 14 12 11 17 17 H 1.48495 * 109.47128 * 94.23742 * 16 14 12 18 18 H 1.48501 * 109.46955 * 214.24149 * 16 14 12 19 19 H 1.48500 * 109.46890 * 334.23636 * 16 14 12 20 20 C 1.53001 * 117.49727 * 80.46616 * 11 10 9 21 21 C 1.52994 * 117.50267 * 149.12521 * 11 10 9 22 22 C 1.50703 * 109.46803 * 119.99866 * 2 1 3 23 23 N 1.33237 * 125.52673 * 75.02961 * 22 2 1 24 24 C 1.30834 * 109.83147 * 179.97438 * 23 22 2 25 25 N 1.34424 * 108.07453 * 359.97438 * 24 23 22 26 26 C 1.46502 * 126.82123 * 179.97438 * 25 24 23 27 27 N 1.30710 * 125.52741 * 254.71566 * 22 2 1 28 28 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47097 * 299.99906 * 1 2 3 30 30 H 1.09000 * 109.47203 * 59.99945 * 1 2 3 31 31 H 0.96995 * 120.00213 * 265.00525 * 4 2 1 32 32 H 0.97001 * 120.00152 * 4.55797 * 9 7 5 33 33 H 1.08998 * 109.47592 * 64.70314 * 10 9 7 34 34 H 1.08995 * 109.47447 * 304.69904 * 10 9 7 35 35 H 0.97002 * 120.00052 * 180.02562 * 15 14 12 36 36 H 1.09004 * 117.49881 * 215.00573 * 20 11 10 37 37 H 1.08997 * 117.49907 * 0.02562 * 20 11 10 38 38 H 1.09000 * 117.50159 * 359.97438 * 21 11 10 39 39 H 1.08998 * 117.50086 * 144.97404 * 21 11 10 40 40 H 1.07999 * 125.96076 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.47204 * 89.97453 * 26 25 24 42 42 H 1.09004 * 109.46771 * 209.97410 * 26 25 24 43 43 H 1.08992 * 109.47294 * 329.97312 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8581 1.1590 -2.4117 7 6 2.6448 -0.7229 -3.5775 8 8 2.8450 -1.9195 -3.5480 9 7 2.8713 -0.0295 -4.7107 10 6 3.2629 -0.7335 -5.9343 11 6 3.5701 0.2859 -7.0332 12 6 2.3991 1.1122 -7.4990 13 1 2.4360 2.1893 -7.4282 14 6 1.2830 0.4935 -8.0209 15 7 0.2102 1.2005 -8.3022 16 14 1.2944 -1.3490 -8.3285 17 1 0.7175 -2.0505 -7.1537 18 1 0.4839 -1.6545 -9.5347 19 1 2.6910 -1.8066 -8.5417 20 6 4.9442 0.9585 -7.0086 21 6 4.6255 -0.0935 -8.0738 22 6 2.0323 -0.7104 1.2305 23 7 2.0262 -2.0293 1.4198 24 6 2.5327 -2.3117 2.5926 25 7 2.8793 -1.1566 3.1864 26 6 3.4840 -0.9972 4.5112 27 7 2.5498 -0.1331 2.2828 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6318 -1.1526 32 1 2.7750 0.9357 -4.7162 33 1 2.4481 -1.3814 -6.2574 34 1 4.1502 -1.3355 -5.7390 35 1 -0.5751 0.7651 -8.6691 36 1 5.0011 1.9987 -7.3294 37 1 5.6293 0.6745 -6.2099 38 1 5.1014 -1.0692 -7.9755 39 1 4.4727 0.2541 -9.0955 40 1 2.6516 -3.3004 3.0107 41 1 4.5700 -1.0234 4.4204 42 1 3.1780 -0.0420 4.9377 43 1 3.1542 -1.8077 5.1610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324060171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:25 Heat of formation + Delta-G solvation = 54.032412 kcal Electronic energy + Delta-G solvation = -26580.943015 eV Core-core repulsion = 22664.662672 eV Total energy + Delta-G solvation = -3916.280343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51527 -40.29967 -38.42244 -36.99194 -36.11325 -34.13433 -33.39886 -32.18205 -31.87814 -30.54076 -27.58979 -27.42362 -25.59754 -24.57821 -22.99226 -22.45193 -21.57466 -20.50194 -19.93339 -19.40224 -18.24583 -17.34173 -16.64391 -16.40027 -16.38362 -15.72299 -15.49328 -15.31056 -14.95385 -14.78539 -14.13463 -14.02960 -13.75499 -13.68245 -13.56386 -13.14378 -12.96174 -12.77902 -12.32803 -12.28424 -12.17299 -12.13063 -11.55051 -11.30824 -11.04211 -10.69145 -10.57422 -10.40986 -10.27456 -10.20307 -9.98898 -9.62027 -9.28374 -9.27046 -9.18739 -8.86529 -8.48311 -8.41493 -6.15868 -4.17691 1.18008 1.75521 1.85612 2.37240 2.78176 3.28219 3.38830 3.43156 3.54532 3.66871 3.91707 4.10185 4.31383 4.38533 4.58818 4.75111 4.75715 4.86069 4.98155 5.05419 5.17944 5.22153 5.47933 5.63185 5.72029 5.79061 5.91829 5.93670 6.08905 6.11299 6.14510 6.25069 6.37581 6.39311 6.47249 6.67778 6.82983 6.92852 7.10228 7.25846 7.66720 7.67900 7.82943 8.11353 8.42327 8.47846 8.87194 9.46830 10.95169 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.002723 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.426563 B =10278.736072 C =10568.740573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.241 3.759 3 H 0.114 0.886 4 N -0.697 5.697 5 C 0.513 3.487 6 O -0.511 6.511 7 C 0.499 3.501 8 O -0.538 6.538 9 N -0.664 5.664 10 C 0.149 3.851 11 C -0.018 4.018 12 C -0.491 4.491 13 H 0.080 0.920 14 C 0.083 3.917 15 N -0.888 5.888 16 Si 0.867 3.133 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.251 1.251 20 C -0.180 4.180 21 C -0.186 4.186 22 C 0.218 3.782 23 N -0.533 5.533 24 C 0.257 3.743 25 N -0.384 5.384 26 C 0.096 3.904 27 N -0.303 5.303 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.419 0.581 32 H 0.420 0.580 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.266 0.734 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.222 0.778 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -6.708 24.877 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.134 3.866 3 H 0.132 0.868 4 N -0.353 5.353 5 C 0.294 3.706 6 O -0.385 6.385 7 C 0.279 3.721 8 O -0.417 6.417 9 N -0.315 5.315 10 C 0.026 3.974 11 C -0.019 4.019 12 C -0.528 4.528 13 H 0.098 0.902 14 C -0.121 4.121 15 N -0.524 5.524 16 Si 0.695 3.305 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.175 1.175 20 C -0.217 4.217 21 C -0.225 4.225 22 C -0.065 4.065 23 N -0.260 5.260 24 C -0.039 4.039 25 N -0.175 5.175 26 C -0.046 4.046 27 N -0.131 5.131 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.257 0.743 32 H 0.258 0.742 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.238 0.762 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.408 -6.138 24.690 26.010 hybrid contribution 0.025 -1.316 0.197 1.331 sum 5.432 -7.454 24.887 26.541 Atomic orbital electron populations 1.22155 0.92544 1.03510 1.03492 1.19014 0.94810 0.95534 0.77267 0.86800 1.45668 1.66300 1.15406 1.07899 1.20363 0.78820 0.86941 0.84474 1.90783 1.48027 1.15192 1.84514 1.19891 0.80257 0.87322 0.84672 1.90720 1.52011 1.14396 1.84522 1.45718 1.64658 1.12718 1.08402 1.21294 0.98817 0.94297 0.82970 1.19581 0.90468 0.97194 0.94705 1.20262 0.96950 0.94022 1.41523 0.90165 1.24931 0.94880 0.97998 0.94309 1.69898 1.03180 1.36396 1.42917 0.87051 0.79447 0.86315 0.77711 1.20361 1.21803 1.17498 1.22797 0.99750 0.97822 1.01319 1.23070 1.05599 0.97709 0.96086 1.24141 0.97515 0.88965 0.95846 1.70355 1.23904 1.14744 1.17037 1.26093 0.94683 0.93556 0.89615 1.50433 1.46613 1.04784 1.15685 1.21988 0.98822 1.05086 0.78683 1.78063 1.21486 1.11768 1.01822 0.91277 0.91247 0.90246 0.74341 0.74237 0.92011 0.92377 0.92404 0.89465 0.90816 0.91084 0.89147 0.76154 0.90019 0.88853 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.47 37.16 0.35 -1.49 16 2 C 0.24 3.12 3.12 -69.08 -0.22 2.91 16 3 H 0.11 1.53 7.58 -51.93 -0.39 1.14 16 4 N -0.70 -10.21 5.06 -55.36 -0.28 -10.49 16 5 C 0.51 8.94 7.85 -11.59 -0.09 8.85 16 6 O -0.51 -9.74 16.16 5.50 0.09 -9.65 16 7 C 0.50 9.74 7.88 -11.58 -0.09 9.65 16 8 O -0.54 -11.21 16.47 5.49 0.09 -11.12 16 9 N -0.66 -13.62 5.46 -60.73 -0.33 -13.95 16 10 C 0.15 3.23 5.08 -4.04 -0.02 3.21 16 11 C -0.02 -0.41 0.85 -155.66 -0.13 -0.54 16 12 C -0.49 -13.09 9.19 -34.44 -0.32 -13.41 16 13 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 14 C 0.08 2.31 5.46 -17.82 -0.10 2.22 16 15 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 16 Si 0.87 21.37 24.70 -169.99 -4.20 17.17 16 17 H -0.28 -6.93 6.96 56.52 0.39 -6.54 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.25 -5.80 6.11 56.52 0.35 -5.45 16 20 C -0.18 -3.48 9.96 -26.70 -0.27 -3.75 16 21 C -0.19 -3.78 8.69 -26.70 -0.23 -4.01 16 22 C 0.22 2.70 6.94 -156.86 -1.09 1.61 16 23 N -0.53 -6.09 10.86 -11.98 -0.13 -6.22 16 24 C 0.26 1.96 12.66 -90.66 -1.15 0.81 16 25 N -0.38 -3.07 4.04 -69.44 -0.28 -3.35 16 26 C 0.10 0.28 11.53 59.85 0.69 0.97 16 27 N -0.30 -3.58 12.70 32.42 0.41 -3.17 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.42 6.08 7.81 -40.82 -0.32 5.76 16 32 H 0.42 8.62 7.83 -40.82 -0.32 8.31 16 33 H 0.06 1.46 4.27 -51.93 -0.22 1.24 16 34 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 40 H 0.22 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 -0.01 8.14 -51.93 -0.42 -0.44 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -34.54 369.65 -6.89 -41.43 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.95 Total: 12.45 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -2.66 Total: 7.02 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.16 Total: -62.87 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.18 Total: -20.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.20 Total: 17.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.54 -6.89 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324060171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.463 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds