Wall clock time and date at job start Tue Mar 31 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47277 * 2 1 4 4 N 1.46500 * 109.47239 * 239.99774 * 2 1 3 5 5 C 1.34774 * 119.99630 * 85.00318 * 4 2 1 6 6 O 1.21349 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.49453 * 119.99846 * 180.02562 * 5 4 2 8 8 O 1.21353 * 120.00125 * 5.08748 * 7 5 4 9 9 N 1.34774 * 120.00102 * 185.09319 * 7 5 4 10 10 C 1.46494 * 120.00151 * 184.55658 * 9 7 5 11 11 C 1.53003 * 109.47491 * 184.70074 * 10 9 7 12 12 C 1.50708 * 115.54705 * 294.79992 * 11 10 9 13 13 H 1.07999 * 119.99435 * 121.52691 * 12 11 10 14 14 C 1.37869 * 119.99831 * 301.24568 * 12 11 10 15 15 N 1.31521 * 120.00014 * 173.16061 * 14 12 11 16 16 Si 1.86803 * 120.00258 * 353.16421 * 14 12 11 17 17 H 1.48495 * 109.47128 * 94.23742 * 16 14 12 18 18 H 1.48501 * 109.46955 * 214.24149 * 16 14 12 19 19 H 1.48500 * 109.46890 * 334.23636 * 16 14 12 20 20 C 1.53001 * 117.49727 * 80.46616 * 11 10 9 21 21 C 1.52994 * 117.50267 * 149.12521 * 11 10 9 22 22 C 1.50703 * 109.46803 * 119.99866 * 2 1 3 23 23 N 1.33237 * 125.52673 * 75.02961 * 22 2 1 24 24 C 1.30834 * 109.83147 * 179.97438 * 23 22 2 25 25 N 1.34424 * 108.07453 * 359.97438 * 24 23 22 26 26 C 1.46502 * 126.82123 * 179.97438 * 25 24 23 27 27 N 1.30710 * 125.52741 * 254.71566 * 22 2 1 28 28 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47097 * 299.99906 * 1 2 3 30 30 H 1.09000 * 109.47203 * 59.99945 * 1 2 3 31 31 H 0.96995 * 120.00213 * 265.00525 * 4 2 1 32 32 H 0.97001 * 120.00152 * 4.55797 * 9 7 5 33 33 H 1.08998 * 109.47592 * 64.70314 * 10 9 7 34 34 H 1.08995 * 109.47447 * 304.69904 * 10 9 7 35 35 H 0.97002 * 120.00052 * 180.02562 * 15 14 12 36 36 H 1.09004 * 117.49881 * 215.00573 * 20 11 10 37 37 H 1.08997 * 117.49907 * 0.02562 * 20 11 10 38 38 H 1.09000 * 117.50159 * 359.97438 * 21 11 10 39 39 H 1.08998 * 117.50086 * 144.97404 * 21 11 10 40 40 H 1.07999 * 125.96076 * 179.97438 * 24 23 22 41 41 H 1.09003 * 109.47204 * 89.97453 * 26 25 24 42 42 H 1.09004 * 109.46771 * 209.97410 * 26 25 24 43 43 H 1.08992 * 109.47294 * 329.97312 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8581 1.1590 -2.4117 7 6 2.6448 -0.7229 -3.5775 8 8 2.8450 -1.9195 -3.5480 9 7 2.8713 -0.0295 -4.7107 10 6 3.2629 -0.7335 -5.9343 11 6 3.5701 0.2859 -7.0332 12 6 2.3991 1.1122 -7.4990 13 1 2.4360 2.1893 -7.4282 14 6 1.2830 0.4935 -8.0209 15 7 0.2102 1.2005 -8.3022 16 14 1.2944 -1.3490 -8.3285 17 1 0.7175 -2.0505 -7.1537 18 1 0.4839 -1.6545 -9.5347 19 1 2.6910 -1.8066 -8.5417 20 6 4.9442 0.9585 -7.0086 21 6 4.6255 -0.0935 -8.0738 22 6 2.0323 -0.7104 1.2305 23 7 2.0262 -2.0293 1.4198 24 6 2.5327 -2.3117 2.5926 25 7 2.8793 -1.1566 3.1864 26 6 3.4840 -0.9972 4.5112 27 7 2.5498 -0.1331 2.2828 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6318 -1.1526 32 1 2.7750 0.9357 -4.7162 33 1 2.4481 -1.3814 -6.2574 34 1 4.1502 -1.3355 -5.7390 35 1 -0.5751 0.7651 -8.6691 36 1 5.0011 1.9987 -7.3294 37 1 5.6293 0.6745 -6.2099 38 1 5.1014 -1.0692 -7.9755 39 1 4.4727 0.2541 -9.0955 40 1 2.6516 -3.3004 3.0107 41 1 4.5700 -1.0234 4.4204 42 1 3.1780 -0.0420 4.9377 43 1 3.1542 -1.8077 5.1610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324060171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:25 Heat of formation + Delta-G solvation = 27.777852 kcal Electronic energy + Delta-G solvation = -26582.081498 eV Core-core repulsion = 22664.662672 eV Total energy + Delta-G solvation = -3917.418826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.22012 -41.75137 -39.92563 -38.67252 -37.23475 -35.20968 -34.61235 -34.28450 -32.75086 -31.50643 -29.08837 -28.08699 -27.50961 -25.80890 -24.16474 -23.20338 -23.06389 -21.50032 -21.37546 -21.08221 -19.73536 -18.44783 -18.01492 -17.82938 -17.28546 -17.04029 -16.91526 -16.56832 -16.35013 -15.92726 -15.47980 -15.45063 -14.89491 -14.87454 -14.68168 -14.43507 -14.11903 -13.99096 -13.90165 -13.65362 -13.24603 -13.00907 -12.80911 -12.75433 -12.63502 -12.51351 -12.16166 -12.08004 -11.49409 -11.17355 -11.07703 -10.94053 -10.85311 -10.74461 -10.64224 -10.44846 -10.35144 -10.09519 -8.30791 -6.34414 0.28137 0.49457 1.13549 1.32211 1.37877 1.45249 1.48631 1.79603 2.09253 2.34014 2.58247 2.87637 2.98478 3.32756 3.45968 3.49048 3.92348 3.95854 4.01436 4.05722 4.24745 4.43130 4.43707 4.46690 4.48051 4.55799 4.71155 4.71523 4.73643 4.93470 4.99372 5.02898 5.10291 5.16190 5.20501 5.22481 5.29246 5.53871 5.67657 5.88219 5.90236 6.29192 6.35224 6.65688 6.72776 6.89837 6.98940 7.32615 8.84037 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.002723 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.426563 B =10278.736072 C =10568.740573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.240 3.760 3 H 0.105 0.895 4 N -0.680 5.680 5 C 0.518 3.482 6 O -0.533 6.533 7 C 0.500 3.500 8 O -0.550 6.550 9 N -0.670 5.670 10 C 0.154 3.846 11 C -0.048 4.048 12 C -0.480 4.480 13 H 0.041 0.959 14 C 0.029 3.971 15 N -0.939 5.939 16 Si 0.921 3.079 17 H -0.285 1.285 18 H -0.295 1.295 19 H -0.221 1.221 20 C -0.158 4.158 21 C -0.175 4.175 22 C 0.205 3.795 23 N -0.568 5.568 24 C 0.267 3.733 25 N -0.381 5.381 26 C 0.087 3.913 27 N -0.334 5.334 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.421 0.579 32 H 0.418 0.582 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.265 0.735 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.271 0.729 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -9.069 27.062 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.133 3.867 3 H 0.123 0.877 4 N -0.335 5.335 5 C 0.298 3.702 6 O -0.409 6.409 7 C 0.280 3.720 8 O -0.429 6.429 9 N -0.320 5.320 10 C 0.031 3.969 11 C -0.049 4.049 12 C -0.518 4.518 13 H 0.059 0.941 14 C -0.170 4.170 15 N -0.578 5.578 16 Si 0.747 3.253 17 H -0.212 1.212 18 H -0.223 1.223 19 H -0.143 1.143 20 C -0.195 4.195 21 C -0.213 4.213 22 C -0.078 4.078 23 N -0.296 5.296 24 C -0.028 4.028 25 N -0.171 5.171 26 C -0.053 4.053 27 N -0.164 5.164 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.259 0.741 32 H 0.255 0.745 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.287 0.713 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.468 -8.517 26.928 29.214 hybrid contribution -0.524 -0.539 -0.303 0.810 sum 6.944 -9.056 26.625 28.968 Atomic orbital electron populations 1.22073 0.91686 1.03568 1.03534 1.19047 0.95461 0.95073 0.77102 0.87706 1.45625 1.64888 1.15338 1.07622 1.20005 0.78978 0.86571 0.84625 1.90779 1.49410 1.15941 1.84775 1.20178 0.79617 0.87173 0.84983 1.90703 1.52477 1.14861 1.84852 1.45750 1.65047 1.12606 1.08605 1.21189 0.98934 0.93897 0.82895 1.19443 0.90228 0.98641 0.96576 1.20398 0.98483 0.92801 1.40104 0.94081 1.25663 0.94650 1.02050 0.94593 1.70034 1.04158 1.38264 1.45388 0.86186 0.80822 0.81457 0.76831 1.21173 1.22266 1.14340 1.22853 0.97535 0.97635 1.01496 1.23118 1.03464 0.99349 0.95406 1.23824 0.98661 0.89595 0.95715 1.70301 1.25678 1.14296 1.19327 1.27003 0.92454 0.95015 0.88375 1.50725 1.45863 1.04102 1.16410 1.22420 0.99379 1.06644 0.76860 1.77951 1.22066 1.13853 1.02502 0.91131 0.89618 0.91713 0.74065 0.74530 0.94019 0.90096 0.92605 0.89828 0.87998 0.88279 0.89798 0.71331 0.88918 0.89091 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.47 71.98 0.68 -2.82 16 2 C 0.24 6.23 3.12 44.25 0.14 6.37 16 3 H 0.11 2.90 7.58 -2.39 -0.02 2.88 16 4 N -0.68 -19.89 5.06 -447.43 -2.26 -22.15 16 5 C 0.52 18.16 7.85 87.27 0.69 18.85 16 6 O -0.53 -20.74 16.16 -3.24 -0.05 -20.80 16 7 C 0.50 19.30 7.88 87.27 0.69 19.99 16 8 O -0.55 -22.32 16.47 -3.26 -0.05 -22.38 16 9 N -0.67 -27.17 5.46 -464.42 -2.54 -29.71 16 10 C 0.15 6.39 5.08 86.38 0.44 6.83 16 11 C -0.05 -2.07 0.85 -52.93 -0.04 -2.11 16 12 C -0.48 -26.08 9.19 25.60 0.24 -25.85 16 13 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 14 C 0.03 1.66 5.46 84.65 0.46 2.13 16 15 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 16 Si 0.92 44.25 24.70 68.60 1.69 45.94 16 17 H -0.28 -13.94 6.96 99.48 0.69 -13.25 16 18 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.22 -9.42 6.11 99.48 0.61 -8.81 16 20 C -0.16 -5.72 9.96 30.62 0.30 -5.41 16 21 C -0.18 -6.55 8.69 30.62 0.27 -6.28 16 22 C 0.21 4.94 6.94 138.63 0.96 5.90 16 23 N -0.57 -12.07 10.86 -191.81 -2.08 -14.16 16 24 C 0.27 3.28 12.66 180.36 2.28 5.57 16 25 N -0.38 -5.16 4.04 -373.61 -1.51 -6.67 16 26 C 0.09 0.25 11.53 127.77 1.47 1.72 16 27 N -0.33 -7.59 12.70 -51.33 -0.65 -8.24 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.42 12.04 7.81 -92.71 -0.72 11.32 16 32 H 0.42 17.34 7.83 -92.71 -0.73 16.62 16 33 H 0.04 1.91 4.27 -2.39 -0.01 1.90 16 34 H 0.08 2.99 8.06 -2.39 -0.02 2.97 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 36 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.27 0.09 8.06 -2.91 -0.02 0.07 16 41 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.13 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: -1.00 -77.29 369.65 0.91 -76.38 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.50 Total: 34.71 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 8.57 Total: 24.88 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -8.75 Total: -138.74 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.11 Total: -43.17 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.69 Total: 45.94 kcal Total: -77.29 0.91 -76.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324060171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.161 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds