Wall clock time and date at job start Tue Mar 31 2020 05:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47055 * 2 1 4 4 C 1.53004 * 109.47294 * 239.99496 * 2 1 3 5 5 N 1.46901 * 109.46638 * 65.00530 * 4 2 1 6 6 C 1.46902 * 110.99753 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47194 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99730 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00021 * 179.97438 * 9 7 6 11 11 H 1.08006 * 119.99858 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00202 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00275 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 119.99951 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46849 * 89.99944 * 14 12 10 16 16 H 1.48491 * 109.47255 * 210.00215 * 14 12 10 17 17 H 1.48505 * 109.46980 * 330.00509 * 14 12 10 18 18 C 1.53005 * 109.46930 * 120.00007 * 2 1 3 19 19 N 1.46505 * 109.46901 * 295.00400 * 18 2 1 20 20 C 1.34773 * 120.00093 * 180.02562 * 19 18 2 21 21 O 1.21523 * 119.99939 * 359.97438 * 20 19 18 22 22 C 1.48149 * 120.00231 * 179.71956 * 20 19 18 23 23 C 1.39437 * 120.09872 * 180.27435 * 22 20 19 24 24 N 1.32080 * 119.87515 * 179.97438 * 23 22 20 25 25 C 1.32139 * 120.07149 * 0.02562 * 24 23 22 26 26 C 1.38731 * 120.19211 * 359.97438 * 25 24 23 27 27 N 1.31796 * 120.12615 * 359.74225 * 26 25 24 28 28 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47123 * 300.00448 * 1 2 3 30 30 H 1.09008 * 109.46926 * 60.00457 * 1 2 3 31 31 H 1.08999 * 109.46978 * 185.00081 * 4 2 1 32 32 H 1.08994 * 109.47113 * 305.00366 * 4 2 1 33 33 H 1.00902 * 110.99600 * 303.94755 * 5 4 2 34 34 H 1.08999 * 109.46615 * 299.99648 * 6 5 4 35 35 H 1.09000 * 109.47507 * 59.99470 * 6 5 4 36 36 H 0.96995 * 119.99886 * 0.02562 * 9 7 6 37 37 H 0.97008 * 120.00257 * 179.97438 * 13 12 10 38 38 H 1.08995 * 109.47418 * 175.00268 * 18 2 1 39 39 H 1.09001 * 109.47199 * 54.99809 * 18 2 1 40 40 H 0.97000 * 119.99795 * 359.97438 * 19 18 2 41 41 H 1.08006 * 120.06419 * 359.95248 * 23 22 20 42 42 H 1.07995 * 119.90160 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.93236 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6516 0.0373 -2.4456 6 6 2.1249 -0.6273 -3.6672 7 6 1.7080 0.1778 -4.8709 8 8 1.0780 1.2041 -4.7255 9 7 2.0351 -0.2424 -6.1089 10 6 1.6554 0.4898 -7.2040 11 1 1.0937 1.4032 -7.0746 12 6 1.9921 0.0563 -8.4804 13 7 1.6286 0.7583 -9.5301 14 14 2.9629 -1.5239 -8.7044 15 1 2.0243 -2.6675 -8.8330 16 1 3.7936 -1.4249 -9.9312 17 1 3.8425 -1.7356 -7.5267 18 6 2.0400 -0.7213 1.2493 19 7 1.6523 0.0353 2.4424 20 6 1.9962 -0.4130 3.6660 21 8 2.6275 -1.4452 3.7796 22 6 1.6095 0.3553 4.8722 23 6 1.9692 -0.1038 6.1387 24 7 1.6226 0.5850 7.2111 25 6 0.9359 1.7067 7.0842 26 6 0.5765 2.1661 5.8254 27 7 0.9231 1.4879 4.7499 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.1264 -0.7996 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 0.6530 0.1792 -2.4753 34 1 3.2118 -0.7052 -3.6404 35 1 1.6906 -1.6250 -3.7296 36 1 2.5386 -1.0633 -6.2252 37 1 1.8640 0.4558 -10.4212 38 1 3.1263 -0.7995 1.2058 39 1 1.6054 -1.7198 1.2952 40 1 1.1487 0.8594 2.3517 41 1 2.5299 -1.0210 6.2427 42 1 0.6543 2.2680 7.9628 43 1 0.0155 3.0837 5.7265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753615721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:22 Heat of formation + Delta-G solvation = -20.141499 kcal Electronic energy + Delta-G solvation = -25148.782448 eV Core-core repulsion = 21229.285683 eV Total energy + Delta-G solvation = -3919.496765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.79556 -39.82026 -38.57606 -37.38612 -35.28601 -34.80263 -33.91862 -32.60755 -32.03125 -31.62888 -27.63164 -27.39553 -25.85108 -25.16752 -24.49770 -23.04563 -21.32032 -20.57764 -19.40448 -18.69693 -18.29233 -18.12872 -17.35330 -16.60935 -16.14418 -15.89516 -15.71500 -15.58684 -15.21082 -14.87343 -14.63698 -14.30709 -14.24654 -13.63564 -13.42005 -13.34131 -13.09656 -12.85065 -12.75782 -12.34267 -12.31070 -12.02956 -11.91086 -11.74203 -11.30554 -11.19517 -11.05693 -10.98854 -10.79598 -10.59770 -10.08816 -9.98052 -9.73943 -9.57807 -9.44946 -8.60253 -8.20817 -8.15117 -6.31591 -3.83111 -0.20805 0.41766 2.22994 2.54884 3.02697 3.06447 3.14943 3.20861 3.37171 3.58393 3.73591 3.81615 4.05602 4.10441 4.23438 4.51821 4.57181 4.63314 4.68925 4.77697 4.90434 4.90596 5.21099 5.28717 5.32398 5.43464 5.51122 5.62251 5.63611 5.67133 5.77322 5.80716 5.90553 5.95496 6.05970 6.13457 6.46827 6.91700 7.06599 7.13659 7.55334 7.58012 7.68228 8.13927 8.59262 8.94415 9.41955 9.82128 10.81473 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.038762 B = 0.001681 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.182215 B =16654.817443 C =17204.950733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 H 0.091 0.909 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.123 3.877 19 N -0.703 5.703 20 C 0.573 3.427 21 O -0.528 6.528 22 C 0.029 3.971 23 C 0.110 3.890 24 N -0.440 5.440 25 C 0.073 3.927 26 C 0.052 3.948 27 N -0.412 5.412 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.351 0.649 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.371 0.629 37 H 0.273 0.727 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.412 0.588 41 H 0.184 0.816 42 H 0.178 0.822 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 -2.692 31.463 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.001 4.001 19 N -0.355 5.355 20 C 0.357 3.643 21 O -0.404 6.404 22 C -0.112 4.112 23 C -0.050 4.050 24 N -0.154 5.154 25 C -0.088 4.088 26 C -0.111 4.111 27 N -0.130 5.130 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.171 0.829 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.249 0.751 41 H 0.201 0.799 42 H 0.195 0.805 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.133 -2.323 31.366 31.452 hybrid contribution -0.095 -1.479 -0.492 1.561 sum -0.228 -3.802 30.874 31.108 Atomic orbital electron populations 1.21917 0.94589 1.02089 1.02526 1.21372 0.96612 1.01307 0.92846 0.89062 1.21881 1.00824 0.94409 0.89260 1.60087 1.21228 1.48963 0.99899 1.21708 1.01308 0.95400 0.90113 1.19712 0.85291 0.87884 0.83588 1.90562 1.43111 1.25639 1.85399 1.42205 1.50993 1.23799 1.05986 1.19436 1.33540 1.07812 0.82652 0.86282 1.25037 0.97831 0.98109 0.95158 1.69622 1.45720 1.38406 0.98369 0.86670 0.80454 0.83628 0.78630 1.19670 1.20157 1.19451 1.21502 1.00574 0.95291 0.82744 1.45851 1.56425 1.28016 1.05161 1.17618 0.79813 0.84349 0.82562 1.90828 1.39835 1.23495 1.86240 1.22220 0.99053 0.94212 0.95691 1.23880 0.94462 0.99362 0.87277 1.68658 1.08873 1.05823 1.32047 1.24172 0.92671 0.92749 0.99241 1.23906 0.98088 1.00340 0.88750 1.68347 1.06734 1.04288 1.33635 0.92621 0.92571 0.91284 0.90673 0.95064 0.82857 0.89409 0.93717 0.79674 0.91613 0.90734 0.90915 0.75105 0.79939 0.80523 0.80320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.84 37.16 0.33 -1.01 16 2 C -0.10 -0.92 2.63 -90.61 -0.24 -1.16 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.07 0.71 5.14 -3.82 -0.02 0.69 16 5 N -0.67 -9.86 6.13 -115.06 -0.70 -10.57 16 6 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 7 C 0.45 10.13 7.82 -10.99 -0.09 10.04 16 8 O -0.57 -15.07 15.78 5.55 0.09 -14.98 16 9 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 10 C -0.31 -8.64 10.16 -14.94 -0.15 -8.80 16 11 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 14 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 18 C 0.12 1.06 5.07 -4.04 -0.02 1.04 16 19 N -0.70 -6.06 5.27 -61.15 -0.32 -6.38 16 20 C 0.57 5.77 7.81 -12.19 -0.10 5.68 16 21 O -0.53 -6.68 16.35 5.35 0.09 -6.60 16 22 C 0.03 0.25 6.75 -82.85 -0.56 -0.31 16 23 C 0.11 0.88 10.77 -17.00 -0.18 0.70 16 24 N -0.44 -3.29 10.49 -12.71 -0.13 -3.42 16 25 C 0.07 0.34 11.23 -17.24 -0.19 0.14 16 26 C 0.05 0.24 11.22 -17.38 -0.20 0.05 16 27 N -0.41 -3.07 9.71 -9.62 -0.09 -3.17 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 7.18 -51.93 -0.37 0.06 16 30 H 0.07 0.69 6.68 -51.92 -0.35 0.34 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.35 5.35 6.68 -39.29 -0.26 5.08 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.41 3.13 7.01 -40.82 -0.29 2.84 16 41 H 0.18 1.31 7.65 -52.48 -0.40 0.91 16 42 H 0.18 0.17 8.06 -52.49 -0.42 -0.25 16 43 H 0.18 0.22 8.06 -52.49 -0.42 -0.21 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -35.49 368.27 -6.75 -42.24 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -5.69 Total: 12.88 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -1.54 Total: 8.84 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.54 Total: -62.53 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.17 Total: -21.58 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.49 -6.75 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.102 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds