Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47055 * 2 1 4 4 C 1.53004 * 109.47294 * 239.99496 * 2 1 3 5 5 N 1.46901 * 109.46638 * 65.00530 * 4 2 1 6 6 C 1.46902 * 110.99753 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47194 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99730 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00021 * 179.97438 * 9 7 6 11 11 H 1.08006 * 119.99858 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00202 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00275 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 119.99951 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46849 * 89.99944 * 14 12 10 16 16 H 1.48491 * 109.47255 * 210.00215 * 14 12 10 17 17 H 1.48505 * 109.46980 * 330.00509 * 14 12 10 18 18 C 1.53005 * 109.46930 * 120.00007 * 2 1 3 19 19 N 1.46505 * 109.46901 * 295.00400 * 18 2 1 20 20 C 1.34773 * 120.00093 * 180.02562 * 19 18 2 21 21 O 1.21523 * 119.99939 * 359.97438 * 20 19 18 22 22 C 1.48149 * 120.00231 * 179.71956 * 20 19 18 23 23 C 1.39437 * 120.09872 * 180.27435 * 22 20 19 24 24 N 1.32080 * 119.87515 * 179.97438 * 23 22 20 25 25 C 1.32139 * 120.07149 * 0.02562 * 24 23 22 26 26 C 1.38731 * 120.19211 * 359.97438 * 25 24 23 27 27 N 1.31796 * 120.12615 * 359.74225 * 26 25 24 28 28 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47123 * 300.00448 * 1 2 3 30 30 H 1.09008 * 109.46926 * 60.00457 * 1 2 3 31 31 H 1.08999 * 109.46978 * 185.00081 * 4 2 1 32 32 H 1.08994 * 109.47113 * 305.00366 * 4 2 1 33 33 H 1.00902 * 110.99600 * 303.94755 * 5 4 2 34 34 H 1.08999 * 109.46615 * 299.99648 * 6 5 4 35 35 H 1.09000 * 109.47507 * 59.99470 * 6 5 4 36 36 H 0.96995 * 119.99886 * 0.02562 * 9 7 6 37 37 H 0.97008 * 120.00257 * 179.97438 * 13 12 10 38 38 H 1.08995 * 109.47418 * 175.00268 * 18 2 1 39 39 H 1.09001 * 109.47199 * 54.99809 * 18 2 1 40 40 H 0.97000 * 119.99795 * 359.97438 * 19 18 2 41 41 H 1.08006 * 120.06419 * 359.95248 * 23 22 20 42 42 H 1.07995 * 119.90160 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.93236 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6516 0.0373 -2.4456 6 6 2.1249 -0.6273 -3.6672 7 6 1.7080 0.1778 -4.8709 8 8 1.0780 1.2041 -4.7255 9 7 2.0351 -0.2424 -6.1089 10 6 1.6554 0.4898 -7.2040 11 1 1.0937 1.4032 -7.0746 12 6 1.9921 0.0563 -8.4804 13 7 1.6286 0.7583 -9.5301 14 14 2.9629 -1.5239 -8.7044 15 1 2.0243 -2.6675 -8.8330 16 1 3.7936 -1.4249 -9.9312 17 1 3.8425 -1.7356 -7.5267 18 6 2.0400 -0.7213 1.2493 19 7 1.6523 0.0353 2.4424 20 6 1.9962 -0.4130 3.6660 21 8 2.6275 -1.4452 3.7796 22 6 1.6095 0.3553 4.8722 23 6 1.9692 -0.1038 6.1387 24 7 1.6226 0.5850 7.2111 25 6 0.9359 1.7067 7.0842 26 6 0.5765 2.1661 5.8254 27 7 0.9231 1.4879 4.7499 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.1264 -0.7996 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 0.6530 0.1792 -2.4753 34 1 3.2118 -0.7052 -3.6404 35 1 1.6906 -1.6250 -3.7296 36 1 2.5386 -1.0633 -6.2252 37 1 1.8640 0.4558 -10.4212 38 1 3.1263 -0.7995 1.2058 39 1 1.6054 -1.7198 1.2952 40 1 1.1487 0.8594 2.3517 41 1 2.5299 -1.0210 6.2427 42 1 0.6543 2.2680 7.9628 43 1 0.0155 3.0837 5.7265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753615721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = -51.038973 kcal Electronic energy + Delta-G solvation = -25150.122263 eV Core-core repulsion = 21229.285683 eV Total energy + Delta-G solvation = -3920.836580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.30581 -40.56011 -40.28086 -38.36664 -36.27036 -35.82986 -35.38985 -33.77336 -33.37310 -32.61462 -28.97167 -28.08099 -26.80642 -26.01910 -25.45623 -24.20840 -22.02291 -21.43528 -21.19835 -20.27798 -19.24845 -18.67033 -17.88095 -17.78859 -17.25045 -16.85211 -16.78902 -16.61968 -16.21458 -15.84997 -15.75816 -15.32941 -15.15788 -14.93113 -14.70736 -14.48713 -14.25508 -13.87992 -13.84350 -13.53064 -13.38727 -13.12518 -12.82449 -12.81281 -12.43455 -12.41247 -12.12521 -11.96744 -11.85635 -11.77287 -11.55670 -11.50846 -10.59121 -10.43392 -10.24586 -10.23724 -10.15795 -9.31001 -8.41031 -6.02025 -0.71057 -0.04503 1.31163 1.35934 1.45198 1.57877 1.88083 1.96220 2.23425 2.69032 2.73166 2.89922 3.15633 3.17141 3.36004 3.43174 3.72593 3.89441 3.92634 3.98859 4.07933 4.18475 4.30643 4.44498 4.51301 4.52410 4.56272 4.58234 4.72390 4.79486 4.94597 5.00770 5.18957 5.23897 5.32483 5.39838 5.53028 5.90951 6.00126 6.05811 6.30611 6.41358 6.60108 6.60481 6.88347 6.97592 7.40207 7.96746 8.76529 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.038762 B = 0.001681 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.182215 B =16654.817443 C =17204.950733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.083 0.917 4 C 0.068 3.932 5 N -0.687 5.687 6 C 0.061 3.939 7 C 0.448 3.552 8 O -0.614 6.614 9 N -0.591 5.591 10 C -0.330 4.330 11 H 0.055 0.945 12 C -0.015 4.015 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.257 1.257 16 H -0.276 1.276 17 H -0.231 1.231 18 C 0.129 3.871 19 N -0.696 5.696 20 C 0.572 3.428 21 O -0.562 6.562 22 C 0.009 3.991 23 C 0.100 3.900 24 N -0.462 5.462 25 C 0.084 3.916 26 C 0.057 3.943 27 N -0.427 5.427 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.345 0.655 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.417 0.583 41 H 0.180 0.820 42 H 0.218 0.782 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -4.321 33.554 33.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.101 0.899 4 C -0.062 4.062 5 N -0.320 5.320 6 C -0.072 4.072 7 C 0.236 3.764 8 O -0.499 6.499 9 N -0.233 5.233 10 C -0.459 4.459 11 H 0.073 0.927 12 C -0.213 4.213 13 N -0.575 5.575 14 Si 0.785 3.215 15 H -0.181 1.181 16 H -0.201 1.201 17 H -0.154 1.154 18 C 0.005 3.995 19 N -0.347 5.347 20 C 0.356 3.644 21 O -0.441 6.441 22 C -0.130 4.130 23 C -0.058 4.058 24 N -0.177 5.177 25 C -0.077 4.077 26 C -0.106 4.106 27 N -0.145 5.145 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.165 0.835 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.255 0.745 41 H 0.197 0.803 42 H 0.234 0.766 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.731 -3.974 33.469 33.712 hybrid contribution -0.496 -0.749 -1.015 1.356 sum 0.235 -4.723 32.454 32.797 Atomic orbital electron populations 1.21884 0.94344 1.02352 1.02253 1.21225 0.96674 1.00680 0.92407 0.89876 1.21959 1.01520 0.94765 0.87911 1.60087 1.20981 1.50304 1.00656 1.21638 1.02903 0.95284 0.87331 1.21021 0.83139 0.87434 0.84854 1.90540 1.44862 1.28133 1.86358 1.42033 1.51714 1.24227 1.05289 1.19020 1.34675 1.07093 0.85144 0.92667 1.26113 0.98593 1.02781 0.93832 1.69806 1.47251 1.41157 0.99263 0.85365 0.78989 0.77334 0.79834 1.18129 1.20080 1.15434 1.21414 1.00411 0.95210 0.82478 1.45809 1.56006 1.28039 1.04875 1.17871 0.79224 0.84035 0.83254 1.90797 1.41501 1.25000 1.86784 1.21951 1.00831 0.95166 0.95051 1.23849 0.94869 0.99654 0.87476 1.68695 1.10010 1.07126 1.31840 1.24892 0.90489 0.91556 1.00784 1.24606 0.97102 1.00850 0.88050 1.68336 1.06997 1.04125 1.35063 0.92082 0.91596 0.92785 0.89730 0.93464 0.83503 0.86816 0.90425 0.77449 0.91155 0.90942 0.90838 0.74479 0.80319 0.76589 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.84 71.98 0.64 -1.82 16 2 C -0.09 -1.51 2.63 -10.79 -0.03 -1.53 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.07 1.28 5.14 86.30 0.44 1.72 16 5 N -0.69 -19.12 6.13 -517.93 -3.17 -22.29 16 6 C 0.06 1.80 6.17 85.56 0.53 2.33 16 7 C 0.45 20.04 7.82 87.66 0.69 20.72 16 8 O -0.61 -33.90 15.78 -3.07 -0.05 -33.95 16 9 N -0.59 -27.74 5.09 -306.99 -1.56 -29.30 16 10 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 11 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 12 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 13 N -0.93 -56.33 13.96 21.66 0.30 -56.03 16 14 Si 0.96 38.64 27.74 68.60 1.90 40.54 16 15 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 16 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 18 C 0.13 2.07 5.07 86.38 0.44 2.51 16 19 N -0.70 -11.56 5.27 -465.66 -2.46 -14.02 16 20 C 0.57 11.54 7.81 86.88 0.68 12.22 16 21 O -0.56 -14.54 16.35 -3.79 -0.06 -14.60 16 22 C 0.01 0.16 6.75 41.89 0.28 0.44 16 23 C 0.10 1.61 10.77 84.94 0.92 2.52 16 24 N -0.46 -6.36 10.49 -194.12 -2.04 -8.40 16 25 C 0.08 0.55 11.23 84.76 0.95 1.50 16 26 C 0.06 0.38 11.22 84.82 0.95 1.33 16 27 N -0.43 -5.77 9.71 -184.34 -1.79 -7.56 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.93 7.18 -2.39 -0.02 0.91 16 30 H 0.05 1.06 6.68 -2.38 -0.02 1.04 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.35 10.28 6.68 -89.69 -0.60 9.68 16 34 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 37 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.42 5.98 7.01 -92.71 -0.65 5.33 16 41 H 0.18 2.78 7.65 -2.91 -0.02 2.75 16 42 H 0.22 -0.49 8.06 -2.91 -0.02 -0.51 16 43 H 0.22 -0.37 8.06 -2.91 -0.02 -0.40 16 Total: -1.00 -83.57 368.27 -1.89 -85.46 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.77 Total: 37.05 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 7.80 Total: 23.10 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -10.72 Total: -137.60 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.11 Total: -48.54 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -83.57 -1.89 -85.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.419 kcal (2) G-P(sol) polarization free energy of solvation -83.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds