Wall clock time and date at job start Tue Mar 31 2020 05:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47101 * 2 1 4 4 C 1.52998 * 109.46813 * 240.00320 * 2 1 3 5 5 N 1.46506 * 109.47237 * 65.00101 * 4 2 1 6 6 C 1.36939 * 120.00073 * 179.72302 * 5 4 2 7 7 H 1.08004 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.38805 * 119.99849 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00455 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00168 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46615 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47374 * 119.99782 * 10 8 6 13 13 H 1.48495 * 109.47187 * 240.00172 * 10 8 6 14 14 C 1.52994 * 109.47023 * 120.00602 * 2 1 3 15 15 N 1.46500 * 109.47237 * 294.99955 * 14 2 1 16 16 C 1.34772 * 120.00106 * 180.02562 * 15 14 2 17 17 O 1.21287 * 120.00222 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00249 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.09480 * 39.09856 * 18 16 15 20 20 C 1.53337 * 109.10322 * 279.99840 * 18 16 15 21 21 C 1.50667 * 107.87780 * 282.26836 * 20 18 16 22 22 C 1.33069 * 130.80688 * 152.75133 * 21 20 18 23 23 N 1.34735 * 108.03422 * 179.67728 * 22 21 20 24 24 C 1.30822 * 109.54385 * 0.04515 * 23 22 21 25 25 N 1.35044 * 108.33499 * 0.22079 * 24 23 22 26 26 C 1.34577 * 131.29134 * 179.09833 * 25 24 23 27 27 O 1.21493 * 120.69935 * 9.57762 * 26 25 24 28 28 N 1.34821 * 118.59686 * 189.57162 * 26 25 24 29 29 H 1.09000 * 109.47034 * 59.98926 * 1 2 3 30 30 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46643 * 299.99881 * 1 2 3 32 32 H 1.09001 * 109.47671 * 305.00441 * 4 2 1 33 33 H 1.08998 * 109.47454 * 185.00438 * 4 2 1 34 34 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 35 35 H 0.97000 * 120.00679 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47106 * 54.99633 * 14 2 1 37 37 H 1.09002 * 109.47509 * 174.99762 * 14 2 1 38 38 H 0.97002 * 119.99939 * 359.97438 * 15 14 2 39 39 H 1.08997 * 109.77657 * 41.85808 * 20 18 16 40 40 H 1.08997 * 109.78251 * 162.67274 * 20 18 16 41 41 H 1.07999 * 125.97596 * 359.70213 * 22 21 20 42 42 H 1.07995 * 125.82950 * 180.20933 * 24 23 22 43 43 H 0.97004 * 118.56063 * 191.81920 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0063 -0.4173 -3.6854 7 1 2.5708 -1.3326 -3.7861 8 6 1.6395 0.2999 -4.8157 9 7 0.9511 1.4150 -4.6930 10 14 2.1216 -0.3182 -6.5113 11 1 2.8857 -1.5845 -6.3777 12 1 0.8976 -0.5606 -7.3164 13 1 2.9654 0.6995 -7.1877 14 6 2.0400 -0.7214 1.2491 15 7 1.6525 0.0351 2.4423 16 6 1.9964 -0.4134 3.6658 17 8 2.6265 -1.4436 3.7790 18 6 1.5983 0.3650 4.8932 19 1 0.5914 0.7590 4.7546 20 6 2.5725 1.5337 5.0842 21 6 3.8436 0.9839 5.6775 22 6 5.0988 1.4188 5.5995 23 7 5.8759 0.5801 6.3124 24 6 5.1369 -0.3664 6.8315 25 7 3.8561 -0.1591 6.4569 26 6 2.7324 -0.8537 6.7132 27 8 2.7329 -1.7560 7.5268 28 7 1.6060 -0.5271 6.0481 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6053 -1.7197 -1.2954 33 1 3.1263 -0.7995 -1.2057 34 1 1.1488 0.8597 -2.3517 35 1 0.6951 1.9165 -5.4829 36 1 1.6053 -1.7199 1.2950 37 1 3.1263 -0.7997 1.2055 38 1 1.1489 0.8592 2.3518 39 1 2.7854 1.9974 4.1211 40 1 2.1378 2.2695 5.7607 41 1 5.4355 2.2915 5.0597 42 1 5.4908 -1.1755 7.4531 43 1 0.7638 -0.9016 6.3504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753625934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:37 Heat of formation + Delta-G solvation = 15.973983 kcal Electronic energy + Delta-G solvation = -26765.907536 eV Core-core repulsion = 22847.976856 eV Total energy + Delta-G solvation = -3917.930680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45132 -40.47289 -39.47357 -37.25692 -36.38648 -34.56765 -33.48030 -32.77129 -32.20286 -30.23658 -29.26364 -26.75861 -25.69935 -24.83909 -24.29843 -22.56454 -21.87496 -21.23141 -20.27385 -19.44793 -18.77341 -17.76401 -17.55052 -17.03557 -16.52928 -16.43508 -15.84383 -15.44056 -15.02505 -14.78979 -14.67703 -14.27420 -14.21193 -13.98051 -13.73212 -13.27144 -13.17610 -13.14418 -12.89419 -12.61919 -12.37715 -12.14439 -11.31466 -11.14671 -10.99349 -10.85885 -10.79108 -10.65902 -10.58473 -10.56010 -10.49056 -10.06881 -9.78860 -9.63398 -9.28656 -8.99663 -8.93618 -6.98270 -5.82603 -3.11184 0.77871 1.74623 2.22230 2.40806 2.59352 2.81611 2.98382 3.40138 3.46511 3.48286 3.85466 3.90344 4.18319 4.24395 4.39532 4.47708 4.54219 4.82431 4.91543 4.97049 5.00997 5.08869 5.25574 5.41337 5.52244 5.67822 5.82087 5.84619 5.87699 5.98349 6.10455 6.11195 6.22574 6.25427 6.31729 6.55766 6.66994 6.68177 6.77143 7.16228 7.34886 7.57720 7.66332 7.85775 8.36529 9.48147 10.04310 10.39055 11.40398 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.002277 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.988652 B =12293.624241 C =12661.146620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.078 0.922 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.127 3.873 15 N -0.717 5.717 16 C 0.491 3.509 17 O -0.524 6.524 18 C 0.120 3.880 19 H 0.131 0.869 20 C -0.051 4.051 21 C -0.039 4.039 22 C 0.014 3.986 23 N -0.482 5.482 24 C 0.256 3.744 25 N -0.454 5.454 26 C 0.737 3.263 27 O -0.529 6.529 28 N -0.704 5.704 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.182 0.818 42 H 0.220 0.780 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 3.354 24.572 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.003 3.997 15 N -0.369 5.369 16 C 0.273 3.727 17 O -0.399 6.399 18 C 0.010 3.990 19 H 0.149 0.851 20 C -0.091 4.091 21 C -0.145 4.145 22 C -0.128 4.128 23 N -0.199 5.199 24 C -0.026 4.026 25 N -0.159 5.159 26 C 0.438 3.562 27 O -0.400 6.400 28 N -0.361 5.361 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.199 0.801 42 H 0.236 0.764 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.399 2.042 25.033 25.119 hybrid contribution -1.378 0.092 -1.179 1.816 sum -0.979 2.134 23.854 23.969 Atomic orbital electron populations 1.21797 0.94585 1.01980 1.01521 1.21556 0.96733 1.00526 0.94087 0.90384 1.20571 0.96648 0.94222 0.85362 1.42336 1.66850 1.27742 1.00597 1.19278 1.28471 1.05622 0.83630 0.91105 1.24732 1.00942 0.97414 0.97894 1.69659 1.43443 1.16768 1.28447 0.86111 0.77630 0.77873 0.84559 1.20525 1.21844 1.21832 1.21470 1.00312 0.95264 0.82639 1.46021 1.57326 1.27852 1.05702 1.20890 0.80491 0.86355 0.84930 1.90776 1.38782 1.24036 1.86305 1.21086 1.03150 0.90102 0.84622 0.85095 1.20553 0.89167 0.95734 1.03598 1.21307 0.98490 0.91963 1.02774 1.21928 0.88201 1.01057 1.01589 1.70799 1.32113 1.04428 1.12543 1.25372 0.77372 1.00073 0.99807 1.43797 1.08998 1.22328 1.40815 1.15544 0.79688 0.80492 0.80501 1.91033 1.83304 1.29253 1.36457 1.44675 1.09286 1.51310 1.30797 0.91037 0.92819 0.93940 0.96019 0.96125 0.78210 0.93546 0.91225 0.91205 0.76328 0.86437 0.87432 0.80108 0.76401 0.73541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.94 37.16 0.33 -1.48 16 2 C -0.11 -1.49 2.46 -90.62 -0.22 -1.72 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.16 3.01 5.65 -4.04 -0.02 2.98 16 5 N -0.73 -17.58 5.33 -59.91 -0.32 -17.90 16 6 C -0.24 -6.53 9.99 -15.06 -0.15 -6.69 16 7 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 10 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.13 1.51 5.06 -4.05 -0.02 1.49 16 15 N -0.72 -6.14 5.28 -60.30 -0.32 -6.46 16 16 C 0.49 4.79 6.71 -10.99 -0.07 4.72 16 17 O -0.52 -7.87 16.04 5.55 0.09 -7.78 16 18 C 0.12 0.67 3.54 -69.21 -0.25 0.42 16 19 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 20 C -0.05 -0.24 5.98 -27.72 -0.17 -0.40 16 21 C -0.04 -0.34 6.39 -81.46 -0.52 -0.86 16 22 C 0.01 0.14 11.83 -18.07 -0.21 -0.08 16 23 N -0.48 -5.60 11.27 -14.82 -0.17 -5.77 16 24 C 0.26 2.78 12.54 -90.11 -1.13 1.65 16 25 N -0.45 -4.92 2.85 -64.88 -0.19 -5.10 16 26 C 0.74 8.32 7.91 -87.06 -0.69 7.63 16 27 O -0.53 -7.45 17.75 5.37 0.10 -7.36 16 28 N -0.70 -5.38 4.84 -60.06 -0.29 -5.67 16 29 H 0.07 1.12 7.18 -51.93 -0.37 0.75 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.40 7.18 -51.93 -0.37 0.02 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 9.55 6.85 -40.82 -0.28 9.27 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 2.21 7.66 -40.82 -0.31 1.90 16 39 H 0.12 0.36 8.01 -51.93 -0.42 -0.05 16 40 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.22 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.43 2.36 8.90 -40.82 -0.36 1.99 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -37.85 362.97 -9.03 -46.88 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.89 Total: 6.20 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -3.22 Total: 7.17 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.56 Total: -67.64 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.18 Total: -15.14 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.85 -9.03 -46.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.857 kcal (2) G-P(sol) polarization free energy of solvation -37.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds