Wall clock time and date at job start Tue Mar 31 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46446 * 2 1 4 4 C 1.53001 * 109.47276 * 119.99305 * 2 1 3 5 5 N 1.46496 * 109.47205 * 295.00831 * 4 2 1 6 6 C 1.36945 * 119.99718 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99756 * 359.97438 * 6 5 4 8 8 C 1.38805 * 119.99878 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00257 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47187 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 300.00154 * 10 8 6 13 13 H 1.48498 * 109.47018 * 60.00200 * 10 8 6 14 14 C 1.52995 * 109.47723 * 240.00117 * 2 1 3 15 15 N 1.46509 * 109.47137 * 64.99261 * 14 2 1 16 16 C 1.34771 * 119.99959 * 180.02562 * 15 14 2 17 17 O 1.21287 * 120.00295 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99891 * 180.02562 * 16 15 14 19 19 H 1.08998 * 109.09837 * 39.10884 * 18 16 15 20 20 C 1.53327 * 109.10496 * 279.99476 * 18 16 15 21 21 C 1.50671 * 107.88341 * 282.27362 * 20 18 16 22 22 C 1.33067 * 130.79979 * 152.75115 * 21 20 18 23 23 N 1.34747 * 108.02878 * 179.68187 * 22 21 20 24 24 C 1.30827 * 109.54185 * 0.03626 * 23 22 21 25 25 N 1.35047 * 108.33182 * 0.22946 * 24 23 22 26 26 C 1.34575 * 131.28717 * 179.09366 * 25 24 23 27 27 O 1.21500 * 120.70264 * 9.58143 * 26 25 24 28 28 N 1.34825 * 118.59818 * 189.57321 * 26 25 24 29 29 H 1.08999 * 109.46631 * 60.00625 * 1 2 3 30 30 H 1.09008 * 109.46446 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47190 * 300.00028 * 1 2 3 32 32 H 1.08997 * 109.46922 * 174.99872 * 4 2 1 33 33 H 1.09000 * 109.46483 * 55.00692 * 4 2 1 34 34 H 0.96996 * 120.00499 * 359.97438 * 5 4 2 35 35 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 36 36 H 1.08991 * 109.47415 * 184.99963 * 14 2 1 37 37 H 1.09004 * 109.46771 * 304.99801 * 14 2 1 38 38 H 0.96994 * 119.99675 * 0.02562 * 15 14 2 39 39 H 1.09009 * 109.77702 * 41.86892 * 20 18 16 40 40 H 1.08996 * 109.78383 * 162.67556 * 20 18 16 41 41 H 1.07995 * 125.98636 * 359.69582 * 22 21 20 42 42 H 1.07996 * 125.83026 * 180.21016 * 24 23 22 43 43 H 0.97008 * 118.56520 * 191.82909 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.0011 -0.4206 3.6857 7 1 2.5615 -1.3383 3.7866 8 6 1.6342 0.2965 4.8160 9 7 0.9508 1.4147 4.6931 10 14 2.1092 -0.3260 6.5120 11 1 1.6028 0.6139 7.5441 12 1 1.5148 -1.6691 6.7307 13 1 3.5882 -0.4173 6.6095 14 6 2.0402 -0.7212 -1.2492 15 7 1.6525 0.0354 -2.4424 16 6 1.9957 -0.4135 -3.6659 17 8 2.6259 -1.4436 -3.7792 18 6 1.5974 0.3650 -4.8932 19 1 1.7016 1.4306 -4.6890 20 6 0.1329 0.0589 -5.2283 21 6 0.0837 -1.2890 -5.8997 22 6 -0.8857 -2.1990 -5.9530 23 7 -0.4415 -3.2391 -6.6855 24 6 0.7799 -3.0003 -7.0889 25 7 1.1547 -1.7919 -6.6165 26 6 2.3082 -1.1097 -6.7383 27 8 3.1752 -1.4880 -7.5009 28 7 2.4816 0.0027 -5.9964 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.1264 -0.7993 1.2056 33 1 1.6055 -1.7197 1.2952 34 1 1.1487 0.8595 2.3517 35 1 0.6941 1.9156 5.4831 36 1 3.1264 -0.7993 -1.2055 37 1 1.6056 -1.7198 -1.2951 38 1 1.1488 0.8593 -2.3518 39 1 -0.4581 0.0367 -4.3126 40 1 -0.2584 0.8211 -5.9021 41 1 -1.8582 -2.1180 -5.4904 42 1 1.3851 -3.6574 -7.6958 43 1 3.2265 0.5879 -6.2050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753625935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:40 Heat of formation + Delta-G solvation = 16.093023 kcal Electronic energy + Delta-G solvation = -26795.015676 eV Core-core repulsion = 22877.090158 eV Total energy + Delta-G solvation = -3917.925518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.45808 -40.47433 -39.47429 -37.25371 -36.38795 -34.56593 -33.48568 -32.76671 -32.20929 -30.23692 -29.26849 -26.74451 -25.70906 -24.84128 -24.30233 -22.55850 -21.88371 -21.23434 -20.26795 -19.44278 -18.78891 -17.75802 -17.55415 -17.03471 -16.53164 -16.46083 -15.73235 -15.54298 -14.98175 -14.88943 -14.62981 -14.29388 -14.17131 -13.99087 -13.71578 -13.30301 -13.25478 -13.03067 -12.94299 -12.61047 -12.36567 -12.13499 -11.31930 -11.14233 -10.97787 -10.85955 -10.77230 -10.65724 -10.59358 -10.56768 -10.49550 -10.12555 -9.78107 -9.63256 -9.28603 -9.00516 -8.92443 -6.98257 -5.82206 -3.10878 0.77282 1.74296 2.22215 2.40322 2.58643 2.81143 2.98211 3.41369 3.45837 3.46740 3.84976 3.89993 4.18147 4.23643 4.39005 4.47300 4.54402 4.81827 4.91549 4.96187 5.00079 5.09226 5.25920 5.40371 5.52325 5.68426 5.82478 5.84725 5.87526 5.98688 6.10438 6.11554 6.22130 6.25468 6.32361 6.56362 6.66447 6.68368 6.77541 7.16280 7.34219 7.57229 7.65486 7.85802 8.37029 9.48402 10.04620 10.39375 11.40667 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.027692 B = 0.002234 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.869871 B =12531.674145 C =12738.656846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.291 1.291 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.717 5.717 16 C 0.491 3.509 17 O -0.524 6.524 18 C 0.120 3.880 19 H 0.132 0.868 20 C -0.051 4.051 21 C -0.038 4.038 22 C 0.014 3.986 23 N -0.482 5.482 24 C 0.256 3.744 25 N -0.454 5.454 26 C 0.736 3.264 27 O -0.529 6.529 28 N -0.704 5.704 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.182 0.818 42 H 0.220 0.780 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.528 1.928 -24.670 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.212 1.212 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.369 5.369 16 C 0.273 3.727 17 O -0.399 6.399 18 C 0.010 3.990 19 H 0.149 0.851 20 C -0.090 4.090 21 C -0.145 4.145 22 C -0.128 4.128 23 N -0.199 5.199 24 C -0.026 4.026 25 N -0.159 5.159 26 C 0.438 3.562 27 O -0.400 6.400 28 N -0.361 5.361 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.199 0.801 42 H 0.236 0.764 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -2.994 0.077 -25.178 25.356 hybrid contribution 0.661 1.293 1.293 1.945 sum -2.333 1.370 -23.885 24.038 Atomic orbital electron populations 1.21796 0.94523 1.02033 1.01524 1.21559 0.96801 1.00477 0.94081 0.90450 1.20567 0.96613 0.94243 0.85369 1.42315 1.66985 1.27647 1.00551 1.19187 1.28888 1.05452 0.83644 0.91214 1.24731 1.00934 0.97368 0.97881 1.69642 1.43473 1.16564 1.28675 0.86252 0.78044 0.77749 0.84061 1.21664 1.21220 1.21252 1.21471 1.00265 0.95312 0.82638 1.46022 1.57308 1.27883 1.05686 1.20888 0.80449 0.86422 0.84906 1.90776 1.39009 1.23799 1.86315 1.21087 0.91010 1.01348 0.85533 0.85074 1.20551 0.94013 0.92087 1.02392 1.21304 0.89888 0.99421 1.03883 1.21922 1.00006 0.89713 1.01182 1.70804 1.08826 1.26055 1.14217 1.25373 0.92953 0.85112 0.99183 1.43794 1.12463 1.17924 1.41734 1.15548 0.80700 0.79666 0.80328 1.91036 1.41577 1.67254 1.40161 1.44680 1.33611 1.25107 1.32665 0.93913 0.92754 0.91043 0.96183 0.95994 0.78206 0.93442 0.91238 0.91193 0.76328 0.86463 0.87435 0.80131 0.76401 0.73517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.94 37.16 0.33 -1.47 16 2 C -0.11 -1.50 2.46 -90.62 -0.22 -1.72 16 3 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 4 C 0.16 3.01 5.65 -4.04 -0.02 2.99 16 5 N -0.73 -17.60 5.33 -59.91 -0.32 -17.92 16 6 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 10 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.13 1.51 5.07 -4.04 -0.02 1.49 16 15 N -0.72 -6.15 5.28 -60.29 -0.32 -6.47 16 16 C 0.49 4.80 6.71 -10.99 -0.07 4.72 16 17 O -0.52 -7.87 16.04 5.55 0.09 -7.78 16 18 C 0.12 0.66 3.54 -69.21 -0.25 0.42 16 19 H 0.13 0.17 8.14 -51.93 -0.42 -0.26 16 20 C -0.05 -0.23 5.98 -27.73 -0.17 -0.40 16 21 C -0.04 -0.33 6.39 -81.47 -0.52 -0.85 16 22 C 0.01 0.13 11.83 -18.07 -0.21 -0.08 16 23 N -0.48 -5.52 11.27 -14.82 -0.17 -5.69 16 24 C 0.26 2.75 12.54 -90.10 -1.13 1.62 16 25 N -0.45 -4.88 2.85 -64.88 -0.19 -5.07 16 26 C 0.74 8.31 7.91 -87.06 -0.69 7.62 16 27 O -0.53 -7.46 17.75 5.37 0.10 -7.36 16 28 N -0.70 -5.40 4.84 -60.06 -0.29 -5.69 16 29 H 0.04 0.39 7.18 -51.93 -0.37 0.02 16 30 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.38 9.56 6.85 -40.82 -0.28 9.28 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 2.22 7.65 -40.82 -0.31 1.90 16 39 H 0.12 0.34 8.01 -51.92 -0.42 -0.07 16 40 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.22 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.43 2.39 8.90 -40.82 -0.36 2.02 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -37.82 362.97 -9.03 -46.85 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.89 Total: 6.24 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -3.22 Total: 7.13 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -0.56 Total: -67.60 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.18 Total: -15.14 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.82 -9.03 -46.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.943 kcal (2) G-P(sol) polarization free energy of solvation -37.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds