Wall clock time and date at job start Tue Mar 31 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.64009 * 2 1 4 4 C 1.54322 * 110.71873 * 123.13408 * 2 1 3 5 5 N 1.47026 * 107.26731 * 96.16871 * 4 2 1 6 6 C 1.34780 * 125.64580 * 178.90601 * 5 4 2 7 7 O 1.21280 * 119.99671 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00224 * 0.02620 * 6 5 4 9 9 C 1.50692 * 109.47341 * 180.02562 * 8 6 5 10 10 C 1.38235 * 119.59148 * 124.99949 * 9 8 6 11 11 C 1.38597 * 119.19007 * 179.97438 * 10 9 8 12 12 C 1.38874 * 118.40029 * 359.97438 * 11 10 9 13 13 F 1.35102 * 120.44402 * 180.02562 * 12 11 10 14 14 C 1.38421 * 119.10970 * 0.02562 * 12 11 10 15 15 N 1.31855 * 119.59216 * 304.72733 * 9 8 6 16 16 C 1.47418 * 108.70544 * 358.94322 * 5 4 2 17 17 C 1.54909 * 104.83141 * 24.12511 * 16 5 4 18 18 H 1.09000 * 111.00575 * 81.06483 * 17 16 5 19 19 C 1.52999 * 111.00513 * 204.91782 * 17 16 5 20 20 N 1.46510 * 109.47093 * 287.19524 * 19 17 16 21 21 C 1.36936 * 120.00047 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99773 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99683 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00166 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99637 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47259 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47203 * 120.00202 * 25 23 21 28 28 H 1.48507 * 109.46794 * 239.99961 * 25 23 21 29 29 H 1.08993 * 109.47070 * 298.31953 * 1 2 3 30 30 H 1.08997 * 109.46759 * 58.31483 * 1 2 3 31 31 H 1.09000 * 109.47239 * 178.31416 * 1 2 3 32 32 H 1.08999 * 109.88752 * 215.59028 * 4 2 1 33 33 H 1.09000 * 109.88379 * 336.76069 * 4 2 1 34 34 H 1.09003 * 109.47358 * 300.00445 * 8 6 5 35 35 H 1.08998 * 109.47198 * 60.00286 * 8 6 5 36 36 H 1.08006 * 120.40757 * 359.97438 * 10 9 8 37 37 H 1.08004 * 120.79998 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.63388 * 180.02562 * 14 12 11 39 39 H 1.09004 * 110.36674 * 142.96418 * 16 5 4 40 40 H 1.08998 * 110.36982 * 265.17605 * 16 5 4 41 41 H 1.08998 * 109.47279 * 47.19415 * 19 17 16 42 42 H 1.09002 * 109.47121 * 167.19866 * 19 17 16 43 43 H 0.97001 * 119.99446 * 0.02562 * 20 19 17 44 44 H 0.97003 * 120.00123 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7890 1.2087 5 7 2.3715 -2.1518 0.7429 6 6 2.8861 -3.1447 1.4951 7 8 3.0903 -4.2345 1.0034 8 6 3.2078 -2.9009 2.9470 9 6 3.7669 -4.1608 3.5561 10 6 4.9954 -4.1261 4.1889 11 6 5.5015 -5.2896 4.7467 12 6 4.7480 -6.4519 4.6471 13 9 5.2016 -7.6092 5.1765 14 6 3.5262 -6.4088 3.9981 15 7 3.0758 -5.2813 3.4836 16 6 2.0126 -2.2521 -0.6834 17 6 2.0790 -0.7976 -1.2123 18 1 3.1061 -0.5099 -1.4365 19 6 1.1816 -0.6184 -2.4384 20 7 1.7915 -1.2851 -3.5917 21 6 1.1639 -1.2590 -4.8085 22 1 0.2195 -0.7465 -4.9181 23 6 1.7415 -1.8911 -5.9009 24 7 2.8921 -2.5160 -5.7672 25 14 0.8858 -1.8549 -7.5610 26 1 -0.3842 -1.0939 -7.4468 27 1 1.7685 -1.1987 -8.5588 28 1 0.5925 -3.2438 -7.9972 29 1 -0.3633 0.4875 0.9046 30 1 -0.3633 0.5398 -0.8745 31 1 -0.3634 -1.0272 -0.0302 32 1 2.9868 -0.3178 1.5783 33 1 1.3262 -0.8220 1.9992 34 1 3.9444 -2.1013 3.0267 35 1 2.3000 -2.6127 3.4769 36 1 5.5541 -3.2037 4.2480 37 1 6.4587 -5.2922 5.2469 38 1 2.9331 -7.3077 3.9160 39 1 2.7294 -2.8809 -1.2117 40 1 1.0047 -2.6520 -0.7938 41 1 0.2037 -1.0573 -2.2403 42 1 1.0664 0.4443 -2.6521 43 1 2.6394 -1.7456 -3.4930 44 1 3.2960 -2.9575 -6.5307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754820016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:56 Heat of formation + Delta-G solvation = -31.902770 kcal Electronic energy + Delta-G solvation = -26332.272393 eV Core-core repulsion = 22392.345660 eV Total energy + Delta-G solvation = -3939.926733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.25708 -40.72130 -39.84313 -37.87225 -34.65826 -33.15431 -32.80724 -32.63439 -31.15250 -29.36997 -28.09367 -26.55829 -25.30865 -24.26444 -23.36227 -22.50810 -21.68855 -19.30377 -19.20342 -17.95001 -17.72695 -17.18578 -16.77560 -16.50051 -16.12981 -15.95244 -15.26295 -14.86803 -14.61742 -14.37850 -14.22286 -13.95102 -13.63155 -13.49793 -13.31731 -13.12493 -12.85354 -12.75759 -12.43349 -12.40446 -12.22525 -12.01831 -11.76832 -11.55370 -11.02052 -10.84377 -10.53411 -10.39797 -10.31917 -10.24980 -9.96690 -9.89201 -9.70955 -9.64964 -9.11154 -8.86037 -8.50360 -6.90516 -5.74126 -3.03335 0.57027 0.80826 2.72884 2.95705 3.39439 3.45145 3.50329 3.52953 3.67300 3.96117 4.22130 4.39999 4.43523 4.52360 4.56733 4.62868 4.85948 4.87095 4.99280 5.05975 5.18402 5.28708 5.38281 5.44388 5.48644 5.51272 5.53455 5.59794 5.61521 5.80338 5.87925 5.98126 6.07340 6.16964 6.23279 6.27802 6.35859 6.41909 6.49113 6.70507 6.84505 7.58769 7.63603 7.71984 8.27626 8.44123 9.55395 10.12829 10.46847 11.48636 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.016544 B = 0.002501 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.099776 B =11191.910352 C =12431.485444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.530 3.470 7 O -0.521 6.521 8 C -0.087 4.087 9 C 0.135 3.865 10 C -0.137 4.137 11 C -0.109 4.109 12 C 0.042 3.958 13 F -0.132 7.132 14 C 0.083 3.917 15 N -0.428 5.428 16 C 0.119 3.881 17 C -0.102 4.102 18 H 0.084 0.916 19 C 0.165 3.835 20 N -0.734 5.734 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.023 0.977 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 2.229 26.224 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.107 0.893 4 C -0.020 4.020 5 N -0.355 5.355 6 C 0.317 3.683 7 O -0.395 6.395 8 C -0.127 4.127 9 C -0.003 4.003 10 C -0.157 4.157 11 C -0.135 4.135 12 C 0.020 3.980 13 F -0.111 7.111 14 C -0.076 4.076 15 N -0.135 5.135 16 C -0.003 4.003 17 C -0.121 4.121 18 H 0.103 0.897 19 C 0.038 3.962 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.184 0.816 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.624 1.565 25.478 25.578 hybrid contribution 0.851 -0.377 -0.414 1.018 sum 2.475 1.188 25.064 25.214 Atomic orbital electron populations 1.21844 0.94064 1.02441 1.01826 1.22185 0.96657 0.99113 0.93691 0.89314 1.22165 0.99826 0.82475 0.97499 1.48543 1.63407 1.11395 1.12127 1.19777 0.77630 0.83579 0.87292 1.90774 1.52190 1.23290 1.73290 1.20581 1.03643 0.94766 0.93723 1.20683 0.91487 0.93405 0.94767 1.21864 0.96141 0.99124 0.98576 1.21603 1.00594 0.91472 0.99880 1.18864 0.96035 0.82817 1.00284 1.91522 1.88904 1.46479 1.84168 1.22927 0.92741 0.97596 0.94338 1.67522 1.34499 0.97866 1.13648 1.22298 1.01283 0.97673 0.79057 1.22614 1.01088 0.93580 0.94828 0.89718 1.20635 0.94180 0.95898 0.85528 1.42400 1.25646 1.64430 1.05317 1.19244 1.03006 1.28251 0.86591 0.91129 1.24751 0.97326 1.00754 0.98154 1.69671 1.18162 1.40008 1.30155 0.86130 0.78522 0.77206 0.84398 1.20569 1.21900 1.21871 0.92915 0.91461 0.92295 0.91556 0.91417 0.87211 0.86916 0.83643 0.83460 0.81556 0.90050 0.91204 0.95709 0.95909 0.78277 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 7.91 37.16 0.29 -1.23 16 2 C -0.10 -1.05 3.47 -88.79 -0.31 -1.36 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.10 0.98 6.07 -3.06 -0.02 0.96 16 5 N -0.62 -8.32 3.33 -170.52 -0.57 -8.89 16 6 C 0.53 7.61 7.78 -10.98 -0.09 7.52 16 7 O -0.52 -10.03 15.60 5.56 0.09 -9.94 16 8 C -0.09 -0.81 5.29 -29.04 -0.15 -0.96 16 9 C 0.13 1.47 5.76 -82.59 -0.48 1.00 16 10 C -0.14 -1.13 9.71 -39.45 -0.38 -1.51 16 11 C -0.11 -0.90 10.16 -39.21 -0.40 -1.30 16 12 C 0.04 0.41 7.35 -39.28 -0.29 0.13 16 13 F -0.13 -1.34 17.28 2.25 0.04 -1.30 16 14 C 0.08 0.93 11.17 -17.47 -0.20 0.73 16 15 N -0.43 -5.61 9.24 -9.42 -0.09 -5.70 16 16 C 0.12 1.95 6.00 -2.53 -0.02 1.94 16 17 C -0.10 -1.55 2.91 -88.48 -0.26 -1.80 16 18 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 19 C 0.17 3.15 4.54 -4.04 -0.02 3.14 16 20 N -0.73 -18.41 5.55 -59.90 -0.33 -18.74 16 21 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 25 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.76 7.12 -51.93 -0.37 0.39 16 31 H 0.06 0.70 7.35 -51.93 -0.38 0.31 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 34 H 0.11 0.66 7.87 -51.93 -0.41 0.25 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.15 0.72 7.95 -52.48 -0.42 0.30 16 37 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.08 1.59 8.04 -51.93 -0.42 1.18 16 40 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 41 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 42 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 43 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -35.53 367.80 -8.55 -44.09 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.39 Total: 5.31 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.55 Total: -0.11 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.26 Total: -61.18 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.53 -8.55 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754820016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.186 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds